Clone Sequence Records
BO05680.3prime Sequence
901 bp (790 high quality bases) assembled on 2005-09-13
> BO05680.3prime
GTGCTGTCCCTGCGGGCGGGCGCCATGCGAAGGGGCTAGAAGGCTTGCGC
CGGAACCGCTCTTCTTGCAGAAGCTCGGCCCCCTAATGCTGGGCGTCGAA
TAGGAGGTATTTGACAGGGATCCCGATCCTGCGGTCATGGCCATTGGCTT
CAGGGATCTGCGCTGCTGGGTGCGCATTTGTGGCAGTGGTGTGCTCGTGC
AGGATATGTTTTGGGCGGGTTTGGTCCTCGATGAGATGGGCGTTTCGGGT
ACACGCGGATGGAACGGATTCAGGTAGGTGGAATCGTTGCTTGCGGTCAC
TTTCATAATGGGAACCACCGGCTTGATGGGCTTCGTCGCCTTAACACTTC
CACTGGGTTTGGACACCGATTCGTTTATGGCTGGATTCCTCAAGCGGCTG
CTCATTAGAGTACGCCTGTTCTCGTAGGCCTTTGTGGACGGATTACTTGG
CGTGGAGAAGGAGTTGCTCCTCTGGCGAAAGGCAGCTGCTGCACCCATCG
GCCCAACAGTGGCTGTGTTCTTGGTCTCCTTGGGCGGCGGAAGATTCTCC
ACCTGGCGATCGGACTTCAGGACTTCCCGGGGCAGCTTAGACTTGTCCTG
AATGGAAAGCGACGACGATCGACGGCGCATTGAGCCCGCCGCATTGGTCT
CACGTAGAGGCATTGGCTTAGTCTTGGCCACGTTGCTCGTTGTGTATGCT
ACCTGAGTGCTGCTGTAGTTGCTGGGGTTCACCAACAGTATGACTGTCCT
GGGATCAAGTCCCTGCTGTTGTTCATGATCACTGATCCCCGTGGTTGCGA
GTTTGTGCCGCTCCAGCAGTTCGTTAATCTGTTGAGCGAGTGTTTCGTCG
ACCAACTCCGTCATAAATGGCTCCTTTTTGGCTACTGACACGGGCGGGAT
C
BO05680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3679-PA | 1932 | CG3679-RA | 1081..1929 | 897..49 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3679-RB | 3215 | CG3679-RB | 1197..2049 | 901..49 | 4235 | 99.8 | Minus |
CG3679-RA | 2760 | CG3679-RA | 1197..2049 | 901..49 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16305359..16306211 | 901..49 | 4235 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:51:48 has no hits.
BO05680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:32 Download gff for
BO05680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-PA | 1077..1932 | 48..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:53 Download gff for
BO05680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-PA | 1077..1932 | 48..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:44 Download gff for
BO05680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 1197..2049 | 49..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:23 Download gff for
BO05680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 1197..2049 | 49..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:23 Download gff for
BO05680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16305359..16306211 | 49..901 | 99 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:44 Download gff for
BO05680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16199392..16200244 | 49..901 | 99 | == | Minus |
BO05680.5prime Sequence
872 bp (783 high quality bases) assembled on 2005-12-02
> BO05680.5prime
GAAGTTATCAGTCGACATGTGTGATGTCCGAAATCTAATTGACCTGACCG
AATGGGATGAGCCCAGCAAGGAGGCGTTGCACGAAGAGCCGGAGGACTCT
GTGGTGGCCACGAACTTTGAGGTGCCCTACGATCCCTTCGATCTGATGGA
GAAGGAAGCTTGCATCAAGGGCATGACCTTGACGTCGCAGATCAAGGAAA
AGGTGTCCAGTGCCGAACGACAGTATCCGGATCTTGAGAGCGAGAGTCCT
CCGGTTTGCATGCAGACGGACACAGCGAATGCGTCCGCACCAGGATCAGG
TGAAACAACCCAAAAGAAGCGCTCGAACAGCTCATTCCAGAAGCAGCTCC
TCAAACTTAATGCCTCGCGATCCGTGATCAACACCCCACCCCATAGTCGA
TCCAAAACAGAGTTTGAAAGAACAATACTGAACGAAAACCTGCAGATGCT
AGCGGCAGAGTCACCACTGAAGCTTATTGAGGACGACGACGTCCTGTCCA
CCAGTATCAATTTCGAGGAAGACCTCAAAATGCTACGCATTCCGATCCTA
GACGCGCTAAACAATGCAGAATCCAAGGCAATAGCCGAAGACAATCACGG
AAACGTAAACAAAATTGATGTCGTGATTCAGGAGGGTCAGAAAAGTCCAC
AGACAACAATCGAAAACCGATCAAATGGCAAGAGTTTGAGCCAGCTCCTG
GAACAGCTGAAGATCTTGGCACACGAACACGTCGAGAGGTCGAAGTGGCA
TTTGTTTGACTCGGCAATTGAATCCATTGCCGCGGTCATCTTCGGACCCA
GTGGCTCTTGTCCGGATGATAGGAAAGCCGAATCAACTATACCATCGCTA
TACTCATACACCCGCCAAGGAA
BO05680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3679-PA | 1932 | CG3679-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3679-RB | 3215 | CG3679-RB | 121..976 | 17..872 | 4280 | 100 | Plus |
CG3679-RA | 2760 | CG3679-RA | 121..976 | 17..872 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16304251..16304955 | 168..872 | 3525 | 100 | Plus |
X | 23542271 | X | 16303990..16304143 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:22:29 has no hits.
BO05680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:33 Download gff for
BO05680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:55 Download gff for
BO05680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:30 Download gff for
BO05680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 111..976 | 8..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:10 Download gff for
BO05680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 111..976 | 8..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:10 Download gff for
BO05680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16303990..16304142 | 17..169 | 100 | -> | Plus |
X | 16304253..16304955 | 170..872 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:30 Download gff for
BO05680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16198023..16198175 | 17..169 | 100 | -> | Plus |
arm_X | 16198286..16198988 | 170..872 | 100 | | Plus |
BO05680.complete Sequence
1963 bp assembled on 2008-08-14
GenBank Submission: FJ630135
> BO05680.complete
GAAGTTATCAGTCGACATGTGTGATGTCCGAAATCTAATTGACCTGACCG
AATGGGATGAGCCCAGCAAGGAGGCGTTGCACGAAGAGCCGGAGGACTCT
GTGGTGGCCACGAACTTTGAGGTGCCCTACGATCCCTTCGATCTGATGGA
GAAGGAAGCTTGCATCAAGGGCATGACCTTGACGTCGCAGATCAAGGAAA
AGGTGTCCAGTGCCGAACGACAGTATCCGGATCTTGAGAGCGAGAGTCCT
CCGGTTTGCATGCAGACGGACACAGCGAATGCGTCCGCACCAGGATCAGG
TGAAACAACCCAAAAGAAGCGCTCGAACAGCTCATTCCAGAAGCAGCTCC
TCAAACTTAATGCCTCGCGATCCGTGATCAACACCCCACCCCATAGTCGA
TCCAAAACAGAGTTTGAAAGAACAATACTGAACGAAAACCTGCAGATGCT
AGCGGCAGAGTCACCACTGAAGCTTATTGAGGACGACGACGTCCTGTCCA
CCAGTATCAATTTCGAGGAAGACCTCAAAATGCTACGCATTCCGATCCTA
GACGCGCTAAACAATGCAGAATCCAAGGCAATAGCCGAAGACAATCACGG
AAACGTAAACAAAATTGATGTCGTGATTCAGGAGGGTCAGAAAAGTCCAC
AGACAACAATCGAAAACCGATCAAATGGCAAGAGTTTGAGCCAGCTCCTG
GAACAGCTGAAGATCTTGGCACACGAACACGTCGAGAGGTCGAAGTGGCA
TTTGTTTGACTCGGCAATTGAATCCATTGCCGCGGTCATCTTCGGACCCA
GTGGCTCTTGTCCGGATGATAGGAAAGCCGAATCAACTATACCATCGCTA
TACTCATACACCCGCCAAGGAACATTCGATCTCGAACTTCAAGGCACAAA
GACAAAGCGTTCCCTGGATGCTAACCACATACAGGAGGAGGAGATCGATG
TACCAGGCAGTAACGTTCAAAGCTTTCCCGATGCCATGGTCTGTTCAACA
GCCACGTTTGATGGCGAATCGCGACTAGATGCATTTGATAAGGACTTGCT
TTCATCTCTACCATCAATACCATCAATACCATCGATACCTTCGATACCGC
CCGTGTCAGTAGCCAAAAAGGAGCCATTTATGACGGAGTTGGTCGACGAA
ACACTCGCTCAACAGATTAACGAACTGCTGGAGCGGCACAAACTCGCAAA
CACGGGGATCAGTGATCATGAACAACAGCAGGGACTTGATCCCAGGACAG
TCATACTGTTGGTGAACCCCAGCAACTACAGCAGCACTCAGGTAGCATAC
ACAACGAGCAACGTGGCCAAGACTAAGCCAATGCCTCTACGTGAGACCAA
TGCGGCGGGCTCAATGCGCCGTCGATCGTCGTCGCTTTCCATTCAGGACA
AGTCTAAGCTGCCCCGGGAAGTCCTGAAGTCCGATCGCCAGGTGGAGAAT
CTTCCGCCGCCCAAGGAGACCAAGAACACAGCCACTGTTGGGCCGATGGG
TGCAGCAGCTGCCTTTCGCCAGAGGAGCAACTCCTTCTCCACGCCAAGTA
ATCCGTCCACAAAGGCCTACGAGAACAGGCGTACTCTAATGAGCAGCCGC
TTGAGGAATCCAGCCATAAACGAATCGGTGTCCAAACCCAGTGGAAGTGT
TAAGGCGACGAAGCCCATCAAGCCGGTGGTTCCCATTATGAAAGTGACCG
CAAGCAACGATTCCACCTACCTGAATCCGTTCCATCCGCGTGTACCCGAA
ACGCCCATCTCATCGAGGACCAAACCCGCCCAAAACATATCCTGCACGAG
CACACCACTGCCACAAATGCGCACCCAGCAGCGCAGATCCCTGAAGCCAA
TGGCCATGACCGCAGGATCGGGATCCCTGTCAAATACCTCCTATTCGACG
CCCAGCATTAGGGGGCCGAGCTTCTGCAAGAAGAGCGGTTCCGGCGCAAG
CTTTCTAGACCAT
BO05680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3679-RB | 1932 | CG3679-PB | 1..1929 | 17..1945 | 9645 | 100 | Plus |
CG3679-RA | 1932 | CG3679-PA | 1..1929 | 17..1945 | 9645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3679-RB | 3215 | CG3679-RB | 121..2049 | 17..1945 | 9645 | 100 | Plus |
CG3679-RA | 2760 | CG3679-RA | 121..2049 | 17..1945 | 9645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16305154..16306211 | 888..1945 | 5275 | 99.9 | Plus |
X | 23542271 | X | 16304251..16304976 | 168..893 | 3630 | 100 | Plus |
X | 23542271 | X | 16303990..16304143 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:31:57 has no hits.
BO05680.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:33 Download gff for
BO05680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 67..2005 | 8..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:10 Download gff for
BO05680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 121..2049 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:24 Download gff for
BO05680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 77..2005 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:39 Download gff for
BO05680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3679-RA | 121..2049 | 17..1947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:39 Download gff for
BO05680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16303990..16304142 | 17..169 | 100 | -> | Plus |
X | 16304253..16304975 | 170..892 | 100 | -> | Plus |
X | 16305159..16306211 | 893..1947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:10 Download gff for
BO05680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16198023..16198175 | 17..169 | 100 | -> | Plus |
arm_X | 16198286..16199008 | 170..892 | 100 | -> | Plus |
arm_X | 16199192..16200244 | 893..1947 | 99 | | Plus |
BO05680.pep Sequence
Translation from 16 to 1963
> BO05680.pep
MCDVRNLIDLTEWDEPSKEALHEEPEDSVVATNFEVPYDPFDLMEKEACI
KGMTLTSQIKEKVSSAERQYPDLESESPPVCMQTDTANASAPGSGETTQK
KRSNSSFQKQLLKLNASRSVINTPPHSRSKTEFERTILNENLQMLAAESP
LKLIEDDDVLSTSINFEEDLKMLRIPILDALNNAESKAIAEDNHGNVNKI
DVVIQEGQKSPQTTIENRSNGKSLSQLLEQLKILAHEHVERSKWHLFDSA
IESIAAVIFGPSGSCPDDRKAESTIPSLYSYTRQGTFDLELQGTKTKRSL
DANHIQEEEIDVPGSNVQSFPDAMVCSTATFDGESRLDAFDKDLLSSLPS
IPSIPSIPSIPPVSVAKKEPFMTELVDETLAQQINELLERHKLANTGISD
HEQQQGLDPRTVILLVNPSNYSSTQVAYTTSNVAKTKPMPLRETNAAGSM
RRRSSSLSIQDKSKLPREVLKSDRQVENLPPPKETKNTATVGPMGAAAAF
RQRSNSFSTPSNPSTKAYENRRTLMSSRLRNPAINESVSKPSGSVKATKP
IKPVVPIMKVTASNDSTYLNPFHPRVPETPISSRTKPAQNISCTSTPLPQ
MRTQQRRSLKPMAMTAGSGSLSNTSYSTPSIRGPSFCKKSGSGASFLDH
BO05680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3679-PB | 643 | CG3679-PB | 1..643 | 1..643 | 3268 | 100 | Plus |
CG3679-PA | 643 | CG3679-PA | 1..643 | 1..643 | 3268 | 100 | Plus |