Clone BO05680 Report

Search the DGRC for BO05680

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG3679-RA
Protein status:BO05680.pep: Imported from assembly
Sequenced Size:1963

Clone Sequence Records

BO05680.3prime Sequence

901 bp (790 high quality bases) assembled on 2005-09-13

> BO05680.3prime
GTGCTGTCCCTGCGGGCGGGCGCCATGCGAAGGGGCTAGAAGGCTTGCGC
CGGAACCGCTCTTCTTGCAGAAGCTCGGCCCCCTAATGCTGGGCGTCGAA
TAGGAGGTATTTGACAGGGATCCCGATCCTGCGGTCATGGCCATTGGCTT
CAGGGATCTGCGCTGCTGGGTGCGCATTTGTGGCAGTGGTGTGCTCGTGC
AGGATATGTTTTGGGCGGGTTTGGTCCTCGATGAGATGGGCGTTTCGGGT
ACACGCGGATGGAACGGATTCAGGTAGGTGGAATCGTTGCTTGCGGTCAC
TTTCATAATGGGAACCACCGGCTTGATGGGCTTCGTCGCCTTAACACTTC
CACTGGGTTTGGACACCGATTCGTTTATGGCTGGATTCCTCAAGCGGCTG
CTCATTAGAGTACGCCTGTTCTCGTAGGCCTTTGTGGACGGATTACTTGG
CGTGGAGAAGGAGTTGCTCCTCTGGCGAAAGGCAGCTGCTGCACCCATCG
GCCCAACAGTGGCTGTGTTCTTGGTCTCCTTGGGCGGCGGAAGATTCTCC
ACCTGGCGATCGGACTTCAGGACTTCCCGGGGCAGCTTAGACTTGTCCTG
AATGGAAAGCGACGACGATCGACGGCGCATTGAGCCCGCCGCATTGGTCT
CACGTAGAGGCATTGGCTTAGTCTTGGCCACGTTGCTCGTTGTGTATGCT
ACCTGAGTGCTGCTGTAGTTGCTGGGGTTCACCAACAGTATGACTGTCCT
GGGATCAAGTCCCTGCTGTTGTTCATGATCACTGATCCCCGTGGTTGCGA
GTTTGTGCCGCTCCAGCAGTTCGTTAATCTGTTGAGCGAGTGTTTCGTCG
ACCAACTCCGTCATAAATGGCTCCTTTTTGGCTACTGACACGGGCGGGAT
C

BO05680.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-PA 1932 CG3679-RA 1081..1929 897..49 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-RB 3215 CG3679-RB 1197..2049 901..49 4235 99.8 Minus
CG3679-RA 2760 CG3679-RA 1197..2049 901..49 4235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16305359..16306211 901..49 4235 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 11:51:48 has no hits.

BO05680.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:32 Download gff for BO05680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-PA 1077..1932 48..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:53 Download gff for BO05680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-PA 1077..1932 48..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:44 Download gff for BO05680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1197..2049 49..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:23 Download gff for BO05680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 1197..2049 49..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:23 Download gff for BO05680.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16305359..16306211 49..901 99 == Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:44 Download gff for BO05680.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16199392..16200244 49..901 99 == Minus

BO05680.5prime Sequence

872 bp (783 high quality bases) assembled on 2005-12-02

> BO05680.5prime
GAAGTTATCAGTCGACATGTGTGATGTCCGAAATCTAATTGACCTGACCG
AATGGGATGAGCCCAGCAAGGAGGCGTTGCACGAAGAGCCGGAGGACTCT
GTGGTGGCCACGAACTTTGAGGTGCCCTACGATCCCTTCGATCTGATGGA
GAAGGAAGCTTGCATCAAGGGCATGACCTTGACGTCGCAGATCAAGGAAA
AGGTGTCCAGTGCCGAACGACAGTATCCGGATCTTGAGAGCGAGAGTCCT
CCGGTTTGCATGCAGACGGACACAGCGAATGCGTCCGCACCAGGATCAGG
TGAAACAACCCAAAAGAAGCGCTCGAACAGCTCATTCCAGAAGCAGCTCC
TCAAACTTAATGCCTCGCGATCCGTGATCAACACCCCACCCCATAGTCGA
TCCAAAACAGAGTTTGAAAGAACAATACTGAACGAAAACCTGCAGATGCT
AGCGGCAGAGTCACCACTGAAGCTTATTGAGGACGACGACGTCCTGTCCA
CCAGTATCAATTTCGAGGAAGACCTCAAAATGCTACGCATTCCGATCCTA
GACGCGCTAAACAATGCAGAATCCAAGGCAATAGCCGAAGACAATCACGG
AAACGTAAACAAAATTGATGTCGTGATTCAGGAGGGTCAGAAAAGTCCAC
AGACAACAATCGAAAACCGATCAAATGGCAAGAGTTTGAGCCAGCTCCTG
GAACAGCTGAAGATCTTGGCACACGAACACGTCGAGAGGTCGAAGTGGCA
TTTGTTTGACTCGGCAATTGAATCCATTGCCGCGGTCATCTTCGGACCCA
GTGGCTCTTGTCCGGATGATAGGAAAGCCGAATCAACTATACCATCGCTA
TACTCATACACCCGCCAAGGAA

BO05680.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-PA 1932 CG3679-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-RB 3215 CG3679-RB 121..976 17..872 4280 100 Plus
CG3679-RA 2760 CG3679-RA 121..976 17..872 4280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16304251..16304955 168..872 3525 100 Plus
X 23542271 X 16303990..16304143 17..170 770 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:22:29 has no hits.

BO05680.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:33 Download gff for BO05680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:55 Download gff for BO05680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:30 Download gff for BO05680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 111..976 8..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:10 Download gff for BO05680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 111..976 8..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:10 Download gff for BO05680.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16303990..16304142 17..169 100 -> Plus
X 16304253..16304955 170..872 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:30 Download gff for BO05680.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16198023..16198175 17..169 100 -> Plus
arm_X 16198286..16198988 170..872 100   Plus

BO05680.complete Sequence

1963 bp assembled on 2008-08-14

GenBank Submission: FJ630135

> BO05680.complete
GAAGTTATCAGTCGACATGTGTGATGTCCGAAATCTAATTGACCTGACCG
AATGGGATGAGCCCAGCAAGGAGGCGTTGCACGAAGAGCCGGAGGACTCT
GTGGTGGCCACGAACTTTGAGGTGCCCTACGATCCCTTCGATCTGATGGA
GAAGGAAGCTTGCATCAAGGGCATGACCTTGACGTCGCAGATCAAGGAAA
AGGTGTCCAGTGCCGAACGACAGTATCCGGATCTTGAGAGCGAGAGTCCT
CCGGTTTGCATGCAGACGGACACAGCGAATGCGTCCGCACCAGGATCAGG
TGAAACAACCCAAAAGAAGCGCTCGAACAGCTCATTCCAGAAGCAGCTCC
TCAAACTTAATGCCTCGCGATCCGTGATCAACACCCCACCCCATAGTCGA
TCCAAAACAGAGTTTGAAAGAACAATACTGAACGAAAACCTGCAGATGCT
AGCGGCAGAGTCACCACTGAAGCTTATTGAGGACGACGACGTCCTGTCCA
CCAGTATCAATTTCGAGGAAGACCTCAAAATGCTACGCATTCCGATCCTA
GACGCGCTAAACAATGCAGAATCCAAGGCAATAGCCGAAGACAATCACGG
AAACGTAAACAAAATTGATGTCGTGATTCAGGAGGGTCAGAAAAGTCCAC
AGACAACAATCGAAAACCGATCAAATGGCAAGAGTTTGAGCCAGCTCCTG
GAACAGCTGAAGATCTTGGCACACGAACACGTCGAGAGGTCGAAGTGGCA
TTTGTTTGACTCGGCAATTGAATCCATTGCCGCGGTCATCTTCGGACCCA
GTGGCTCTTGTCCGGATGATAGGAAAGCCGAATCAACTATACCATCGCTA
TACTCATACACCCGCCAAGGAACATTCGATCTCGAACTTCAAGGCACAAA
GACAAAGCGTTCCCTGGATGCTAACCACATACAGGAGGAGGAGATCGATG
TACCAGGCAGTAACGTTCAAAGCTTTCCCGATGCCATGGTCTGTTCAACA
GCCACGTTTGATGGCGAATCGCGACTAGATGCATTTGATAAGGACTTGCT
TTCATCTCTACCATCAATACCATCAATACCATCGATACCTTCGATACCGC
CCGTGTCAGTAGCCAAAAAGGAGCCATTTATGACGGAGTTGGTCGACGAA
ACACTCGCTCAACAGATTAACGAACTGCTGGAGCGGCACAAACTCGCAAA
CACGGGGATCAGTGATCATGAACAACAGCAGGGACTTGATCCCAGGACAG
TCATACTGTTGGTGAACCCCAGCAACTACAGCAGCACTCAGGTAGCATAC
ACAACGAGCAACGTGGCCAAGACTAAGCCAATGCCTCTACGTGAGACCAA
TGCGGCGGGCTCAATGCGCCGTCGATCGTCGTCGCTTTCCATTCAGGACA
AGTCTAAGCTGCCCCGGGAAGTCCTGAAGTCCGATCGCCAGGTGGAGAAT
CTTCCGCCGCCCAAGGAGACCAAGAACACAGCCACTGTTGGGCCGATGGG
TGCAGCAGCTGCCTTTCGCCAGAGGAGCAACTCCTTCTCCACGCCAAGTA
ATCCGTCCACAAAGGCCTACGAGAACAGGCGTACTCTAATGAGCAGCCGC
TTGAGGAATCCAGCCATAAACGAATCGGTGTCCAAACCCAGTGGAAGTGT
TAAGGCGACGAAGCCCATCAAGCCGGTGGTTCCCATTATGAAAGTGACCG
CAAGCAACGATTCCACCTACCTGAATCCGTTCCATCCGCGTGTACCCGAA
ACGCCCATCTCATCGAGGACCAAACCCGCCCAAAACATATCCTGCACGAG
CACACCACTGCCACAAATGCGCACCCAGCAGCGCAGATCCCTGAAGCCAA
TGGCCATGACCGCAGGATCGGGATCCCTGTCAAATACCTCCTATTCGACG
CCCAGCATTAGGGGGCCGAGCTTCTGCAAGAAGAGCGGTTCCGGCGCAAG
CTTTCTAGACCAT

BO05680.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-RB 1932 CG3679-PB 1..1929 17..1945 9645 100 Plus
CG3679-RA 1932 CG3679-PA 1..1929 17..1945 9645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-RB 3215 CG3679-RB 121..2049 17..1945 9645 100 Plus
CG3679-RA 2760 CG3679-RA 121..2049 17..1945 9645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16305154..16306211 888..1945 5275 99.9 Plus
X 23542271 X 16304251..16304976 168..893 3630 100 Plus
X 23542271 X 16303990..16304143 17..170 770 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:31:57 has no hits.

BO05680.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:33 Download gff for BO05680.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 67..2005 8..1945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:10 Download gff for BO05680.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 121..2049 17..1947 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:24 Download gff for BO05680.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 77..2005 17..1947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:39 Download gff for BO05680.complete
Subject Subject Range Query Range Percent Splice Strand
CG3679-RA 121..2049 17..1947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:39 Download gff for BO05680.complete
Subject Subject Range Query Range Percent Splice Strand
X 16303990..16304142 17..169 100 -> Plus
X 16304253..16304975 170..892 100 -> Plus
X 16305159..16306211 893..1947 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:10 Download gff for BO05680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16198023..16198175 17..169 100 -> Plus
arm_X 16198286..16199008 170..892 100 -> Plus
arm_X 16199192..16200244 893..1947 99   Plus

BO05680.pep Sequence

Translation from 16 to 1963

> BO05680.pep
MCDVRNLIDLTEWDEPSKEALHEEPEDSVVATNFEVPYDPFDLMEKEACI
KGMTLTSQIKEKVSSAERQYPDLESESPPVCMQTDTANASAPGSGETTQK
KRSNSSFQKQLLKLNASRSVINTPPHSRSKTEFERTILNENLQMLAAESP
LKLIEDDDVLSTSINFEEDLKMLRIPILDALNNAESKAIAEDNHGNVNKI
DVVIQEGQKSPQTTIENRSNGKSLSQLLEQLKILAHEHVERSKWHLFDSA
IESIAAVIFGPSGSCPDDRKAESTIPSLYSYTRQGTFDLELQGTKTKRSL
DANHIQEEEIDVPGSNVQSFPDAMVCSTATFDGESRLDAFDKDLLSSLPS
IPSIPSIPSIPPVSVAKKEPFMTELVDETLAQQINELLERHKLANTGISD
HEQQQGLDPRTVILLVNPSNYSSTQVAYTTSNVAKTKPMPLRETNAAGSM
RRRSSSLSIQDKSKLPREVLKSDRQVENLPPPKETKNTATVGPMGAAAAF
RQRSNSFSTPSNPSTKAYENRRTLMSSRLRNPAINESVSKPSGSVKATKP
IKPVVPIMKVTASNDSTYLNPFHPRVPETPISSRTKPAQNISCTSTPLPQ
MRTQQRRSLKPMAMTAGSGSLSNTSYSTPSIRGPSFCKKSGSGASFLDH

BO05680.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3679-PB 643 CG3679-PB 1..643 1..643 3268 100 Plus
CG3679-PA 643 CG3679-PA 1..643 1..643 3268 100 Plus