Clone BO05682 Report

Search the DGRC for BO05682

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:82
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)k14710-RA
Protein status:BO05682.pep: Imported from assembly
Sequenced Size:2617

Clone Sequence Records

BO05682.3prime Sequence

934 bp (783 high quality bases) assembled on 2005-12-02

> BO05682.3prime
ATGGTCTAGAAAGCTTGCTTCAAACACCAAAGGTATAGAAGTAAAAGGTA
GCACCGGACATGATGGCTCTAACTGCAGCGACGTGGCGAAGCAATCGGCT
GAGGCATGGAAATCGCCCAGGATCTCCATCACCTTTCCCAGTGCGAACCA
AATTTTTGGACAGCTCGGATCCAGTTTGGCCGCATCTTTTAGCATTTTTT
CAGCCAACCTCGGCTCGCCCAGTACCAAATGCGCCTCTCCAAGCGCACGC
AAAGCCTCTGTGTGATTTGGGTTGGCGGCCACGGCGTTCAGGAAACATTG
CTTGGCGTCAAACCATTGCTCCAAATAGACATGCACCTGGCCACGCATAA
ACATAATCTGATGCGAAAGCGGATAAATCTGTGAGGCTTCGTGTATGCAG
TTGAGTGCCTCGTTCGGCTGATCAATCCGCAGATAGACATCAGCCAGCAG
AAGCCATATTTCAATCTGTAGCATCCAGGGTCGTCGGGGTCCAGGACGCT
GCGTAAATGAGCTCAATGAGCTTGCTGCTTCACTCAGAGCCTGTTCAACG
CGGGAGACTGCAGCCAATGAAGCCGCGTACACAGAATTTGAATCCTTGTC
GGACATCTGTGAGGAATGTGCCAAGTGAACACCACTCTTGGTGTCTGAGT
GCTTTTCCTCCTCTCCCGCTAGCTGGGCCTCGTAAACGTCCCGCCACACG
GCCAGCATGTGCTGCACAGTGCCCAACGCCGTCTCCGCGTCCTCTAGATG
CAGCTGAAGATGTGCCTTAACGTGCAGTAGCTGCAGGTTATCGGGAAACT
CGTGTAAAGCATCCTCAACAACTCCCAAAGCTTCACGAGGTCGGCGCGAC
GATGTCAGCAACAGTGCGAACAGGTGTAGACATGGCGCATGTTCCATACG
CCACGCCAGCGCGAAACGGATATGAACCCATGCC

BO05682.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8325-PA 2586 l(2)k14710-RA 1668..2583 934..19 4530 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k14710-RA 3079 CG8325-RA 1849..2764 934..19 4550 99.8 Minus
l(2)k14710-RB 3049 CG8325-RB 2196..2734 557..19 2695 100 Minus
l(2)k14710-RB 3049 CG8325-RB 1849..2195 934..588 1705 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6211596..6211942 588..934 1705 99.4 Plus
2R 25286936 2R 6210285..6210489 147..351 1010 99.5 Plus
2R 25286936 2R 6210097..6210227 19..149 655 100 Plus
2R 25286936 2R 6210728..6210855 460..587 640 100 Plus
2R 25286936 2R 6210547..6210660 346..459 570 100 Plus
Blast to na_te.dros performed on 2015-02-13 11:52:00 has no hits.

BO05682.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:34 Download gff for BO05682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8325-PA 1668..2586 18..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:57 Download gff for BO05682.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8325-PA 1668..2586 18..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:47 Download gff for BO05682.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 1849..2764 19..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:29 Download gff for BO05682.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 1849..2764 19..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:29 Download gff for BO05682.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6210097..6210226 19..148 100 <- Plus
2R 6210287..6210483 149..345 100 <- Plus
2R 6210547..6210660 346..459 100 <- Plus
2R 6210728..6210855 460..587 100 <- Plus
2R 6211596..6211942 588..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:47 Download gff for BO05682.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2097602..2097731 19..148 100 <- Plus
arm_2R 2097792..2097988 149..345 100 <- Plus
arm_2R 2098052..2098165 346..459 100 <- Plus
arm_2R 2098233..2098360 460..587 100 <- Plus
arm_2R 2099101..2099447 588..934 99   Plus

BO05682.5prime Sequence

898 bp (746 high quality bases) assembled on 2005-12-02

> BO05682.5prime
GAAGTTATCAGTCGACATGGCCAACAAGAACATGCGTAACACCACAACCA
AAGTGGAGGCCCTGATTGAGAGCTGTCGCAGCGAGGGCAAGTGGCACCGG
GTCATCGAGCTAACGGATGAACTGAAGACCGGGTCCCCGCACAATGAGTG
CCTGGCCAACTTTCTGGTGGGGGAAGCTCGTCTGGAGAGTTACCTGGAGG
AAAACGCTCTCGCGTCAGACTCAAATTTTGGTCGCGCCAAGTCTGGATTG
GCGGAGGCCCGGCGTTTCCTTCACTTGGCTTTGGGTGAGAGTGGCCAGAA
GGCGGGCATCGCCCTGGACGCCTATTTGCTGCTGGCCAAGCTGTGCTTTG
CCTGCGGCGAGTATGAGCAGAGTCTAGACAATTTCGTCAAGGCAGAACTC
AACACGCTTGCCGAGAAGGAGCTGACCCTTCGCAGCCTGAAGATCCTTGC
GGAATCGTATGCCATCAAGGGATTGTGTCTGGAGCAGCAGACTACGAAGC
CGTCATCTAAGTTTAAGAAGGCCGAAAAGGACACGGAAATGATTAGCTGT
TTTGAGCGCGCATCTGATCTGGGGCTGCTCTATCTGCAGGAATACGATCT
CGTTAGTGGAAGCAGTGGCTCGTCCAACAACTCGACAGCTGGTTCTACGT
TGAATGTAAACGCCTCTACTGTGCAGCCGTCGAGCAGCAGTTTTGCAATC
AGCAGTACAATACCGGCGAGTGGTCCAAGTGGACTGGAAATGAACCGCAG
GATGGGCGCCATCCTAGAGACCGCCCTGCAACGGGCACCCATAGTGCTTA
TTAAGACGGAAAAGCTTCAAGAGGCCGTTGAACGGTATCGAATCATGCTA
AACGCCATCGAAACGAGGGCTACTCAATCGTTGCGCCTCACGCTGGCC

BO05682.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8325-PA 2586 l(2)k14710-RA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k14710-RB 3049 CG8325-RB 182..1063 17..898 4410 100 Plus
l(2)k14710-RA 3079 CG8325-RA 182..1063 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6212802..6213159 898..541 1790 100 Minus
2R 25286936 2R 6213469..6213752 429..146 1420 100 Minus
2R 25286936 2R 6213812..6213941 146..17 650 100 Minus
2R 25286936 2R 6213216..6213327 541..430 560 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:05:25 has no hits.

BO05682.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:34 Download gff for BO05682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8325-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:58 Download gff for BO05682.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8325-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:46 Download gff for BO05682.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 173..1063 10..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:17 Download gff for BO05682.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 173..1063 10..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:17 Download gff for BO05682.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6212802..6213158 542..898 100 <- Minus
2R 6213216..6213327 430..541 100 <- Minus
2R 6213469..6213751 147..429 100 <- Minus
2R 6213812..6213950 10..146 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:46 Download gff for BO05682.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2100307..2100663 542..898 100 <- Minus
arm_2R 2100721..2100832 430..541 100 <- Minus
arm_2R 2100974..2101256 147..429 100 <- Minus
arm_2R 2101317..2101455 10..146 97   Minus

BO05682.complete Sequence

2617 bp assembled on 2008-08-14

GenBank Submission: FJ630136

> BO05682.complete
GAAGTTATCAGTCGACATGGCCAACAAGAACATGCGTAACACCACAACCA
AAGTGGAGGCCCTGATTGAGAGCTGTCGCAGCGAGGGCAAGTGGCACCGG
GTCATCGAGCTAACGGATGAACTGAAGACCGGGTCCCCGCACAATGAGTG
CCTGGCCAACTTTCTGGTGGGGGAAGCTCGTCTGGAGAGTTACCTGGAGG
AAAACGCTCTCGCGTCAGACTCAAATTTTGGTCGCGCCAAGTCTGGATTG
GCGGAGGCCCGGCGTTTCCTTCACTTGGCTTTGGGTGAGAGTGGCCAGAA
GGCGGGCATCGCCCTGGACGCCTATTTGCTGCTGGCCAAGCTGTGCTTTG
CCTGCGGCGAGTATGAGCAGAGTCTAGACAATTTCGTCAAGGCAGAACTC
AACACGCTTGCCGAGAAGGAGCTGACCCTTCGCAGCCTGAAGATCCTTGC
GGAATCGTATGCCATCAAGGGATTGTGTCTGGAGCAGCAGACTACGAAGC
CGTCATCTAAGTTTAAGAAGGCCGAAAAGGACACGGAAATGATTAGCTGT
TTTGAGCGCGCATCTGATCTGGGGCTGCTCTATCTGCAGGAATACGATCT
CGTTAGTGGAAGCAGTGGCTCGTCCAACAACTCGACAGCTGGTTCTACGT
TGAATGTAAACGCCTCTACTGTGCAGCCGTCGAGCAGCAGTTTTGCAATC
AGCAGTACAATACCGGCGAGTGGTCCAAGTGGACTGGAAATGAACCGCAG
GATGGGCGCCATCCTAGAGACCGCCCTGCAACGGGCACCCATAGTGCTTA
TTAAGACGGAAAAGCTTCAAGAGGCCGTTGAACGGTATCGAATCATGCTA
AACGCCATCGAAACGAGGGCTACTCAATCGTTGCGCCTCACGCTGGCCCG
CCAGCTAGCTGAGGTTCTTTTGAGAGGGGTCTCGGGCACGATTTACTCGC
CTCCTTTTACCGGAAAATCTGGAGGTGGGACGCTGCGAGGAGGATCCTCC
AAGAAACTTTGGAAACCGCGTAAATACGCAGCCCGCCAGCAGTTTAACCC
TCGGAACCAGCAGGAAGAGGTAATTCTGTTGCTACTCATAGCCGAGGCAC
TGGCTGTGAGGGATACAGTTTTGTCGCAGAGTCCAGAGTTTAGACAGGCC
CGTCAGCATGCTATGGGCAACGTTACGGCCGTCTATGACCTCCTGACGTT
GGCTACTGTGCGCTGGGGGCTCGTCCAGCTATTAAATGAGTCCTTTGAGA
AGGCGCTAAAGTTTAGCTTTGGTGAACAGCATGTGTGGCGGCAGTACGGC
TTAAGTTTGATGGCAGCCGAAAAGCACTCGCACGCTTTAAGGGTCTTGCA
AGAATCAATGAAGTTGACTCCTAGTGATCCTTTGCCATGTCTGTTGGCTT
CTCGCCTTTGCTACGAGAGTCTGGAGACGGTAAAGCAAGGTCTGGACTAT
GCTCAGCAAGCGCTGAAGCGCGAAGTAAAGGGCTTGCGACCATCGCGAAG
CCAACTCTTTGTGGGCATCGGTCACCAACAGCTAGCCATCCAGTCAAATC
TTAAAAGCGAGCGAGATGCTTGTCACAAGCTGGCTTTGGACGCCCTGGAG
CGCGCTGTGCAGTTTGATGGGAACGACCACCTGGCGGAATACTACTTGTC
GTTGCAGTACGCACTTCTGGGACAGCTGGCGGAGGCATTGGTTCATATCC
GTTTCGCGCTGGCGTTGCGTATGGAACATGCGCCATGTCTACACCTGTTC
GCACTGTTGCTGACATCGTCGCGCCGACCTCGTGAAGCTTTGGGAGTTGT
TGAGGATGCTTTACACGAGTTTCCCGATAACCTGCAGCTACTGCACGTTA
AGGCACATCTTCAGCTGCATCTAGAGGACGCGGAGACGGCGTTGGGCACT
GTGCAGCACATGCTGGCCGTGTGGCGGGACGTTTACGAGGCCCAGCTAGC
GGGAGAGGAGGAAAAGCACTCAGACACCAAGAGTGGTGTTCACTTGGCAC
ATTCCTCACAGATGTCCGACAAGGATTCAAATTCTGTGTACGCGGCTTCA
TTGGCTGCAGTCTCCCGCGTTGAACAGGCTCTGAGTGAAGCAGCAAGCTC
ATTGAGCTCATTTACGCAGCGTCCTGGACCCCGACGACCCTGGATGCTAC
AGATTGAAATATGGCTTCTGCTGGCTGATGTCTATCTGCGGATTGATCAG
CCGAACGAGGCACTCAACTGCATACACGAAGCCTCACAGATTTATCCGCT
TTCGCATCAGATTATGTTTATGCGTGGCCAGGTGCATGTCTATTTGGAGC
AATGGTTTGACGCCAAGCAATGTTTCCTGAACGCCGTGGCCGCCAACCCA
AATCACACAGAGGCTTTGCGTGCGCTTGGAGAGGCGCATTTGGTACTGGG
CGAGCCGAGGTTGGCTGAAAAAATGCTAAAAGATGCGGCCAAACTGGATC
CGAGCTGTCCAAAAATTTGGTTCGCACTGGGAAAGGTGATGGAGATCCTG
GGCGATTTCCATGCCTCAGCCGATTGCTTCGCCACGTCGCTGCAGTTAGA
GCCATCATGTCCGGTGCTACCTTTTACTTCTATACCTTTGGTGTTTGAAG
CAAGCTTTCTAGACCAT

BO05682.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k14710-RA 2586 CG8325-PA 1..2583 17..2599 12915 100 Plus
l(2)k14710-RB 2556 CG8325-PB 1..2014 17..2030 10070 100 Plus
l(2)k14710-RB 2556 CG8325-PB 2015..2553 2061..2599 2695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k14710-RA 3079 CG8325-RA 182..2764 17..2599 12915 100 Plus
l(2)k14710-RB 3049 CG8325-RB 182..2195 17..2030 10070 100 Plus
l(2)k14710-RB 3049 CG8325-RB 2196..2734 2061..2599 2695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6212218..6213159 1482..541 4710 100 Minus
2R 25286936 2R 6211596..6212145 2030..1481 2750 100 Minus
2R 25286936 2R 6213469..6213752 429..146 1420 100 Minus
2R 25286936 2R 6210285..6210489 2471..2267 1010 99.5 Minus
2R 25286936 2R 6210097..6210227 2599..2469 655 100 Minus
2R 25286936 2R 6213812..6213941 146..17 650 100 Minus
2R 25286936 2R 6210728..6210855 2158..2031 640 100 Minus
2R 25286936 2R 6210547..6210660 2272..2159 570 100 Minus
2R 25286936 2R 6213216..6213327 541..430 560 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:44:40 has no hits.

BO05682.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:38 Download gff for BO05682.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 169..2760 10..2599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:31 Download gff for BO05682.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 182..2764 17..2601 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:08 Download gff for BO05682.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 178..2760 17..2601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:20 Download gff for BO05682.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k14710-RA 182..2764 17..2601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:20 Download gff for BO05682.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6213469..6213751 147..429 100 <- Minus
2R 6213812..6213941 17..146 100   Minus
2R 6210095..6210226 2470..2601 98 <- Minus
2R 6210287..6210483 2273..2469 100 <- Minus
2R 6210547..6210660 2159..2272 100 <- Minus
2R 6210728..6210855 2031..2158 100 <- Minus
2R 6211596..6212144 1482..2030 100 <- Minus
2R 6212219..6213158 542..1481 100 <- Minus
2R 6213216..6213327 430..541 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:31 Download gff for BO05682.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2097600..2097731 2470..2601 98 <- Minus
arm_2R 2097792..2097988 2273..2469 100 <- Minus
arm_2R 2098052..2098165 2159..2272 100 <- Minus
arm_2R 2098233..2098360 2031..2158 100 <- Minus
arm_2R 2099101..2099649 1482..2030 100 <- Minus
arm_2R 2099724..2100663 542..1481 100 <- Minus
arm_2R 2100721..2100832 430..541 100 <- Minus
arm_2R 2100974..2101256 147..429 100 <- Minus
arm_2R 2101317..2101446 17..146 100   Minus

BO05682.pep Sequence

Translation from 16 to 2617

> BO05682.pep
MANKNMRNTTTKVEALIESCRSEGKWHRVIELTDELKTGSPHNECLANFL
VGEARLESYLEENALASDSNFGRAKSGLAEARRFLHLALGESGQKAGIAL
DAYLLLAKLCFACGEYEQSLDNFVKAELNTLAEKELTLRSLKILAESYAI
KGLCLEQQTTKPSSKFKKAEKDTEMISCFERASDLGLLYLQEYDLVSGSS
GSSNNSTAGSTLNVNASTVQPSSSSFAISSTIPASGPSGLEMNRRMGAIL
ETALQRAPIVLIKTEKLQEAVERYRIMLNAIETRATQSLRLTLARQLAEV
LLRGVSGTIYSPPFTGKSGGGTLRGGSSKKLWKPRKYAARQQFNPRNQQE
EVILLLLIAEALAVRDTVLSQSPEFRQARQHAMGNVTAVYDLLTLATVRW
GLVQLLNESFEKALKFSFGEQHVWRQYGLSLMAAEKHSHALRVLQESMKL
TPSDPLPCLLASRLCYESLETVKQGLDYAQQALKREVKGLRPSRSQLFVG
IGHQQLAIQSNLKSERDACHKLALDALERAVQFDGNDHLAEYYLSLQYAL
LGQLAEALVHIRFALALRMEHAPCLHLFALLLTSSRRPREALGVVEDALH
EFPDNLQLLHVKAHLQLHLEDAETALGTVQHMLAVWRDVYEAQLAGEEEK
HSDTKSGVHLAHSSQMSDKDSNSVYAASLAAVSRVEQALSEAASSLSSFT
QRPGPRRPWMLQIEIWLLLADVYLRIDQPNEALNCIHEASQIYPLSHQIM
FMRGQVHVYLEQWFDAKQCFLNAVAANPNHTEALRALGEAHLVLGEPRLA
EKMLKDAAKLDPSCPKIWFALGKVMEILGDFHASADCFATSLQLEPSCPV
LPFTSIPLVFEASFLDH

BO05682.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k14710-PA 861 CG8325-PA 1..861 1..861 4364 100 Plus
l(2)k14710-PB 851 CG8325-PB 1..851 1..861 4297 98.7 Plus