Clone Sequence Records
BO05683.3prime Sequence
899 bp (846 high quality bases) assembled on 2005-12-02
> BO05683.3prime
ATGGTCTAGAAAGCTTGCTGAGTACGCGCAAAGGTGTCCGCACTTGGGGC
ACTTGGAGTGTTTGGCAAAGTACTTCTGCAGGTGCTCTATGTGACCGCCG
TGGGAGCATCCTTGGCACCAGGCGTAGACTCCCCGGACGATCAGACCGCA
GACGCAGCACTTGGCGGACTGCATGGACTTGCACTTGTCGCAGTACCATC
CCACCTTGCCGCCCATTGGACGTCCACACTCTCCACAGTTCGTGTGCATG
GCGGTCGAGTGCTGGTTGAGCTGCTGCACCGATCTCAGCCAGGAGCGGTT
GATAACCTCGCAGGCCTCGTTCCACAGCTCATAGCGATGCAGCTGGTCCA
CGTAGGTGTAAAACCAGTGCTCCACCAATGCATCGTCAATGGGCAGGAGC
TTCCGAGCTTCTCCCAGCGCTATAAGGACTGTCAGAGCTGTTTGCACATC
GCCCACATCGTTCATTAGCATGAGGGCATCGGAGACGAACTTATGCGGTT
CCCACATGGGTATGGGCGGGACATGGCTGACTTTTAGGACAGTGGGAACA
TGCGGTGGAGGTGACTTTTCGTGATCGGACGCCTTGAGATCCAGTTGTGG
TCGTGCAGCCTGCACATCGTGATGAAGGGCGGGGAAGGCCAAAGCTTTCG
GGCATTCTGTGGGACCCACGTAGATAAACCCATTGCGCAAGAGCTCAAAG
TTGTCAAAGGTAATCTCGCTGATGATTTGCGTTTCGGACAGAATCACTGA
GCTCGTAGGCGGATGCTCCACACCACTGCTGCCGAGCGTATCATCGTCCA
CATTCGCCACATCAATTTCGTGGGCTGTTTCCGGCGTGTTTCCATTGAGA
TCCTGGCCTAGTTCAGTTCGCTGCTGTGGCCAATCGCTGGCTACTTGCG
BO05683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-PB | 2331 | CG7609-RB | 1448..2328 | 899..19 | 4405 | 100 | Minus |
| CG7609-PA | 1797 | CG7609-RA | 1448..1788 | 899..559 | 1705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RC | 2702 | CG7609-RC | 1544..2424 | 899..19 | 4405 | 100 | Minus |
| CG7609-RB | 2699 | CG7609-RB | 1541..2421 | 899..19 | 4405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29742250..29742604 | 19..373 | 1775 | 100 | Plus |
| 3R | 32079331 | 3R | 29742919..29743259 | 559..899 | 1705 | 100 | Plus |
| 3R | 32079331 | 3R | 29742666..29742852 | 372..558 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:32:56 has no hits.
BO05683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:35 Download gff for
BO05683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PB | 1448..2331 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:59 Download gff for
BO05683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PB | 1448..2331 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:13 Download gff for
BO05683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 1541..2421 | 19..899 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:39 Download gff for
BO05683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 1541..2421 | 19..899 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:39 Download gff for
BO05683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29742919..29743259 | 559..899 | 100 | | Plus |
| 3R | 29742250..29742603 | 19..372 | 100 | <- | Plus |
| 3R | 29742667..29742852 | 373..558 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:13 Download gff for
BO05683.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25568389..25568574 | 373..558 | 100 | <- | Plus |
| arm_3R | 25567972..25568325 | 19..372 | 100 | <- | Plus |
| arm_3R | 25568641..25568981 | 559..899 | 100 | | Plus |
BO05683.5prime Sequence
938 bp (741 high quality bases) assembled on 2005-12-02
> BO05683.5prime
GAAGTTATCAGTCGACATGCCCGATTCCGTGGAGGACACCTCCACAATCT
CGCTGCGGATATGCCTGGAAGGACACGCGAACGCCCTGGCCCTGAATAAG
GACAACAACCAGATTGCTTTGGCCGGAAGAAGCTTGCTTAAGGTGTACTC
CATAAACAGCAATGGCTTCACGGAATCGTGTAATATGCGCGGAAAGAACC
AGAATCTTAGCTACTCCGCCAACGATGTGGCCTGGTCCACCTTGGATAGC
AATCTTTTGGCTACGGCGGCCACGAACGGAGTGGTTTCCGTGTGGGATCT
CTCCAAGTTCGGCAGGCAGAAGCAGCTGCTTGTCTACAACGAACATGAGC
GCACCGCTCATACCGTGACCTTTCACAGCAGCGAGCCCAACATCCTGATC
TCCGGTTCTCAGGATGGCACCATCAAGTGTTTCGACATCCGATCGGATAA
GTCAATCAACACCTACTTCTGCAACTCGGAATCAGTGCGGGATGTCAAGT
TCAGTCCACACACACAAAACATATTCTCCGCCGTCTCCGAGAATGGAACT
GTCCAGTTGTGGGACATGCGGAAGTGGGACAAGTGCATGGTGCAGTTTAC
GGCGCACTACGGGCCAGTCTACACATGCGACTGGCATCCCACAAGGAATT
GGCTGGCCACCGGAAGTCGGGACAAGCAGATCAAGGTGTGGAACATGGAT
GGCAGGCCGGGATTGGAGCACACCATTCACACAATCGCCGTAGTGGGACG
GGTTAAGTGGCGACCAGAAAGAACTTATCACATCGCTAGTTGTGCCCTTG
TGGTGGACTACAGCGTTCATGTGTGGGACATCCGCAGACCCTACATCCCC
TTTTGCTCCCTTCACGAGCACACAAATGTGACTACTGGAATTGCGTGGCA
GGGCAGCGACTCGCACTGTCTTCTGTCCATCAGCAAGG
BO05683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-PA | 1797 | CG7609-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG7609-PB | 2331 | CG7609-RB | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG7609-PA | 1797 | CG7609-RA | 848..922 | 864..938 | 350 | 98.6 | Plus |
| CG7609-PB | 2331 | CG7609-RB | 848..922 | 864..938 | 350 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RC | 2702 | CG7609-RC | 94..1015 | 17..938 | 4520 | 99.5 | Plus |
| CG7609-RB | 2699 | CG7609-RB | 94..1015 | 17..938 | 4520 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29744184..29744823 | 774..135 | 3200 | 100 | Minus |
| 3R | 32079331 | 3R | 29743958..29744121 | 938..775 | 730 | 96.3 | Minus |
| 3R | 32079331 | 3R | 29744882..29744999 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:36:47 has no hits.
BO05683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:37 Download gff for
BO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:00 Download gff for
BO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-PB | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:27 Download gff for
BO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..1015 | 9..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:12:01 Download gff for
BO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..1015 | 9..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:12:01 Download gff for
BO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29743958..29744121 | 775..938 | 96 | <- | Minus |
| 3R | 29744184..29744823 | 135..774 | 100 | <- | Minus |
| 3R | 29744882..29745000 | 17..134 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:27 Download gff for
BO05683.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25569680..25569843 | 775..938 | 96 | <- | Minus |
| arm_3R | 25569906..25570545 | 135..774 | 100 | <- | Minus |
| arm_3R | 25570604..25570722 | 17..134 | 99 | <- | Minus |
BO05683.complete Sequence
2362 bp assembled on 2008-08-14
GenBank Submission: FJ630137
> BO05683.complete
GAAGTTATCAGTCGACATGCCCGATTCCGTGGAGGACACCTCCACAATCT
CGCTGCGGATATGCCTGGAAGGACACGCGAACGCCCTGGCCCTGAATAAG
GACAACAACCAGATTGCTTTGGCCGGAAGAAGCTTGCTTAAGGTGTACTC
CATAAACAGCAATGGCTTCACGGAATCGTGTAATATGCGCGGAAAGAACC
AGAATCTTAGCTACTCCGCCAACGATGTGGCCTGGTCCACCTTGGATAGC
AATCTTTTGGCTACGGCGGCCACGAACGGAGTGGTTTCCGTGTGGGATCT
CTCCAAGTTCGGCAGGCAGAAGCAGCTGCTTGTCTACAACGAACATGAGC
GCACCGCTCATACCGTGACCTTTCACAGCAGCGAGCCCAACATCCTGATC
TCCGGTTCTCAGGATGGCACCATCAAGTGTTTCGACATCCGATCGGATAA
GTCAATCAACACCTACTTCTGCAACTCGGAATCAGTGCGGGATGTCAAGT
TCAGTCCACACACACAAAACATATTCTCCGCCGTCTCCGAGAATGGAACT
GTCCAGTTGTGGGACATGCGGAAGTGGGACAAGTGCATGGTGCAGTTTAC
GGCGCACTACGGGCCAGTCTACACATGCGACTGGCATCCCACAAGGAATT
GGCTGGCCACCGGAAGTCGGGACAAGCAGATCAAGGTGTGGAACATGGAT
GGCAGGCCGGGATTGGAGCACACCATTCACACAATCGCCGTAGTGGGACG
GGTTAAGTGGCGACCAGAAAGAACTTATCACATCGCTAGTTGTGCCCTTG
TGGTGGACTACAGCGTTCATGTGTGGGACATCCGCAGACCCTACATCCCC
TTTGCCTCCTTCAACGAGCACACCAATGTGACTACTGGAATTGCGTGGCA
GGGCAGCGACTCGCACTGTCTTCTGTCCATCAGCAAGGACTCCACCATTT
ACAAACATGCTTTTAAGGATGCCACGAGGCCAGCGCTGAAGGCAAATGCC
CAGGGAGCTAGCCTGGGCAGATTTGGGGACATCTCCTTTGCCAACAAGAT
CAAGGAGTATGAACCCAAGACCAGCGGTGCATCCAATACCAAGTCTTCTA
GCTTCATTCGCCGTAAGACGAATGTGGCTGGCAGCATTCAGTTCCATTTG
GACCATTCCAAAATGTACAAATTCATGGTAAACGACACGTTTTCCGGCTA
TCCCCTAAGCGAATCTGTTTCAAGACCCACCCAAGAACACGAAAGTTTTA
TTGGCTGTGCCAGGGAACTTGTTATCAGTGGGAAAAAACTATCGGAGTTA
TGCGAGCACAATGCAGAGGTTTCCAAGAAATACGGCAAACATAATGCCAC
CACATTGTGGAACTTTATCAAATTGTTCTACGGCAGCAATCACTTTGAGC
CTCCCTTCGAGCACCGCTCCTCCTTCTCGAATCAAAAGAATCCAATGAAC
TCACGACGTGCCACGCAAGTAGCCAGCGATTGGCCACAGCAGCGAACTGA
ACTAGGCCAGGATCTCAATGGAAACACGCCGGAAACAGCCCACGAAATTG
ATGTGGCGAATGTGGACGATGATACGCTCGGCAGCAGTGGTGTGGAGCAT
CCGCCTACGAGCTCAGTGATTCTGTCCGAAACGCAAATCATCAGCGAGAT
TACCTTTGACAACTTTGAGCTCTTGCGCAATGGGTTTATCTACGTGGGTC
CCACAGAATGCCCGAAAGCTTTGGCCTTCCCCGCCCTTCATCACGATGTG
CAGGCTGCACGACCACAACTGGATCTCAAGGCGTCCGATCACGAAAAGTC
ACCTCCACCGCATGTTCCCACTGTCCTAAAAGTCAGCCATGTCCCGCCCA
TACCCATGTGGGAACCGCATAAGTTCGTCTCCGATGCCCTCATGCTAATG
AACGATGTGGGCGATGTGCAAACAGCTCTGACAGTCCTTATAGCGCTGGG
AGAAGCTCGGAAGCTCCTGCCCATTGACGATGCATTGGTGGAGCACTGGT
TTTACACCTACGTGGACCAGCTGCATCGCTATGAGCTGTGGAACGAGGCC
TGCGAGGTTATCAACCGCTCCTGGCTGAGATCGGTGCAGCAGCTCAACCA
GCACTCGACCGCCATGCACACGAACTGTGGAGAGTGTGGACGTCCAATGG
GCGGCAAGGTGGGATGGTACTGCGACAAGTGCAAGTCCATGCAGTCCGCC
AAGTGCTGCGTCTGCGGTCTGATCGTCCGGGGAGTCTACGCCTGGTGCCA
AGGATGCTCCCACGGCGGTCACATAGAGCACCTGCAGAAGTACTTTGCCA
AACACTCCAAGTGCCCCAAGTGCGGACACCTTTGCGCGTACTCAGCAAGC
TTTCTAGACCAT
BO05683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RB | 2331 | CG7609-PB | 1..2328 | 17..2344 | 11640 | 100 | Plus |
| CG7609-RC | 2334 | CG7609-PC | 1..2331 | 17..2344 | 11575 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RB | 2699 | CG7609-RB | 94..2421 | 17..2344 | 11640 | 100 | Plus |
| CG7609-RC | 2702 | CG7609-RC | 94..2424 | 17..2344 | 11575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29744184..29744823 | 774..135 | 3200 | 100 | Minus |
| 3R | 32079331 | 3R | 29742919..29743377 | 1804..1346 | 2295 | 100 | Minus |
| 3R | 32079331 | 3R | 29742250..29742604 | 2344..1990 | 1775 | 100 | Minus |
| 3R | 32079331 | 3R | 29743789..29744121 | 1107..775 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 29742666..29742852 | 1991..1805 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 29743434..29743591 | 1346..1189 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 29744882..29744999 | 134..17 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 29743651..29743732 | 1189..1108 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:09:31 has no hits.
BO05683.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:01 Download gff for
BO05683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 66..2397 | 9..2344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:11 Download gff for
BO05683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 94..2421 | 17..2346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:11 Download gff for
BO05683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 70..2397 | 17..2346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:29 Download gff for
BO05683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 94..2421 | 17..2346 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:29 Download gff for
BO05683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29742919..29743377 | 1346..1804 | 100 | <- | Minus |
| 3R | 29743435..29743590 | 1190..1345 | 100 | <- | Minus |
| 3R | 29743651..29743732 | 1108..1189 | 100 | <- | Minus |
| 3R | 29742247..29742603 | 1991..2346 | 99 | <- | Minus |
| 3R | 29742667..29742852 | 1805..1990 | 100 | <- | Minus |
| 3R | 29743789..29744121 | 775..1107 | 100 | <- | Minus |
| 3R | 29744184..29744823 | 135..774 | 100 | <- | Minus |
| 3R | 29744882..29744999 | 17..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:11 Download gff for
BO05683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25567969..25568325 | 1991..2346 | 99 | <- | Minus |
| arm_3R | 25568389..25568574 | 1805..1990 | 100 | <- | Minus |
| arm_3R | 25568641..25569099 | 1346..1804 | 100 | <- | Minus |
| arm_3R | 25569157..25569312 | 1190..1345 | 100 | <- | Minus |
| arm_3R | 25569373..25569454 | 1108..1189 | 100 | <- | Minus |
| arm_3R | 25569511..25569843 | 775..1107 | 100 | <- | Minus |
| arm_3R | 25569906..25570545 | 135..774 | 100 | <- | Minus |
| arm_3R | 25570604..25570721 | 17..134 | 100 | | Minus |
BO05683.pep Sequence
Translation from 16 to 2362
> BO05683.pep
MPDSVEDTSTISLRICLEGHANALALNKDNNQIALAGRSLLKVYSINSNG
FTESCNMRGKNQNLSYSANDVAWSTLDSNLLATAATNGVVSVWDLSKFGR
QKQLLVYNEHERTAHTVTFHSSEPNILISGSQDGTIKCFDIRSDKSINTY
FCNSESVRDVKFSPHTQNIFSAVSENGTVQLWDMRKWDKCMVQFTAHYGP
VYTCDWHPTRNWLATGSRDKQIKVWNMDGRPGLEHTIHTIAVVGRVKWRP
ERTYHIASCALVVDYSVHVWDIRRPYIPFASFNEHTNVTTGIAWQGSDSH
CLLSISKDSTIYKHAFKDATRPALKANAQGASLGRFGDISFANKIKEYEP
KTSGASNTKSSSFIRRKTNVAGSIQFHLDHSKMYKFMVNDTFSGYPLSES
VSRPTQEHESFIGCARELVISGKKLSELCEHNAEVSKKYGKHNATTLWNF
IKLFYGSNHFEPPFEHRSSFSNQKNPMNSRRATQVASDWPQQRTELGQDL
NGNTPETAHEIDVANVDDDTLGSSGVEHPPTSSVILSETQIISEITFDNF
ELLRNGFIYVGPTECPKALAFPALHHDVQAARPQLDLKASDHEKSPPPHV
PTVLKVSHVPPIPMWEPHKFVSDALMLMNDVGDVQTALTVLIALGEARKL
LPIDDALVEHWFYTYVDQLHRYELWNEACEVINRSWLRSVQQLNQHSTAM
HTNCGECGRPMGGKVGWYCDKCKSMQSAKCCVCGLIVRGVYAWCQGCSHG
GHIEHLQKYFAKHSKCPKCGHLCAYSASFLDH
BO05683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-PB | 776 | CG7609-PB | 1..776 | 1..776 | 4202 | 100 | Plus |
| CG7609-PC | 777 | CG7609-PC | 1..777 | 1..776 | 4190 | 99.9 | Plus |
| Pex7-PB | 339 | CG6486-PB | 36..323 | 35..309 | 236 | 26.7 | Plus |
| Pex7-PA | 339 | CG6486-PA | 36..323 | 35..309 | 236 | 26.7 | Plus |
| wds-PB | 361 | CG17437-PB | 63..357 | 12..270 | 184 | 26.1 | Plus |
