Clone Sequence Records
BO05684.3prime Sequence
931 bp (791 high quality bases) assembled on 2005-12-02
> BO05684.3prime
ATGGTCTAGAAAGCTTGCTTTCACAAAATTTGGGTTCTTTTTCAGTATAA
CGAAGCCCTCCATGACCGGAGTGAGGGCCAGATACTCATCGGTGGCCAGC
TCGGCGCGCTCGCCAATGGCCAGCAGGACGGGCGTGGTGTGCGTTTGGAA
GCCGGTGATGGTCTTCGGCTTGCCTGCCTGGCCGACCACATCGATGGCAA
TGCCGACGCGCACGGGCACCTGCAGCTGATTGAGCTCCTCATCGAAGGTG
ATCAGCATGCGAGCCTGCATGGCAGGCACCAGTGTGTAGAGCAGATAGTG
CGATCGGTTCAGTATCAGGTTCTTCACGTCCAGCAGGGAAACCAGCGTAG
CCATCAGTCCAGCGACGGCCATGGGGTTCATCAGCTGCCTATCGCTGTGG
TAGGGACTCAGCGAGAGCGTGCCCTTGCCCAAGTGCGTCAAGCTCTGGGC
GATGCGCACCATGAACAGATTGCTGGGATCCTTAGAATGGTACTGCGCCA
ACTGGCGTAGCATGGAGGCCAGCCGAGCGTTATTCGTGCCGGCGCCCACC
AAGCCCATGGCGAAGATCGCATTGTGGGCCACCTCGGCGTCGCTATCGTG
CGAGAACTTGCTCAGCGTGTCGATGATGTTCAGCTTGGGATTGGAGGCGG
ATATCAGGCCCAATGCCAGTGGTACGGCCCGACGAATGGCTGGCTCGCAA
TAGCGCAGCAGGTTTCCAAACGAGCGGTATGCCATTTCGGCACCAATGTC
CTCGCCCATGGCGATCAGGGCAATTCCCAGCACGGCGATCGATTGGGTGG
CCGACAAGTCCTTCTCGCGTTCCTTTTCCTTCTCTTTCTCCTTCTCCTTT
TCCTTATCCTTGCCCTTGTCCTTCTTGCTCTTTTCCTTCTCGTCATCGGC
ACTGGACGTCTCGTAGTGATCGGAGCAGATG
BO05684.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7762-PA | 2760 | Rpn1-RA | 1845..2757 | 931..19 | 4565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 1985..2897 | 931..19 | 4565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19917181..19918016 | 854..19 | 4180 | 100 | Minus |
| 3L | 28110227 | 3L | 19917035..19917114 | 931..852 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:54:24 has no hits.
BO05684.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:38 Download gff for
BO05684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-PA | 1845..2760 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:01 Download gff for
BO05684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7762-PA | 1845..2760 | 18..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:21 Download gff for
BO05684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 1985..2897 | 19..931 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:20 Download gff for
BO05684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 1985..2897 | 19..931 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:20 Download gff for
BO05684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19917035..19917113 | 853..931 | 100 | -> | Minus |
| 3L | 19917183..19918016 | 19..852 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:21 Download gff for
BO05684.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19910135..19910213 | 853..931 | 100 | -> | Minus |
| arm_3L | 19910283..19911116 | 19..852 | 100 | | Minus |
BO05684.5prime Sequence
856 bp (749 high quality bases) assembled on 2005-12-02
> BO05684.5prime
GAAGTTATCAGTCGACATGACGGGCGAGACCAAGCTGGAGAAGAAGCCGC
TGAAGCCGGCGGCATCCGAAGGCGATGCCAAGGATCCGAAGGCCAAGAAG
GATGAAAAGAAGGACGGCAAGGACAAGGAGCAGCAGCCGGAGCTCTCCGA
CGAGGACCAGCAGCTGCAGGAGGAGCTGGAGCTGCTGGTGCAGCACTTGC
AGGAGCCGGATGCCAAGCTCTACCAGCCGACGCTGGAGAGTATGGCCAAA
TTGATCAGAGCCTCCACGACGTCGATGACCTCGGTGCCCAAGCCTTTGAA
GTTCATGCGCCCGCACTACGAAACCATGAAGACGGTGTACAAGCACATGC
CCAATGAGCAGGCTCGCCAGTTGTGCGCCGACATCATCTCAGTGCTCTCG
ATGACCATGGGCAGCGGCAAGGATTGCCTGGCCTACCGATTCCTCTGCGA
TCGCAAGCAGCGCATCGGGGACTGGGGCCATGAGTATGTGCGTCATTTGT
CTGGCGAAATTTCGGCCCACTATCACGATACAACGGGAGACTTTCGTGTA
CAGCTCATCGAACTGGTCAAGCAGATCATCCCGTACAATATGGAGCACAA
TGCCGAGGCTGATGCCTGCGATCTGCTGATCGAAATCGATCACTTGCACC
TGCTGAGCGACTTTGTGGACGAGTCGGCCTATCCCCGCGTCTGTCTCTAT
CTGCAGTCCTGCTATCCGTATGTTCCCGACCCGGACAACACCATTATCCT
GGAAACCGCGCTCCAGCTGTCGCGCAAGTTCAACCAGTACACACAGGCCA
TGCGACTGGCGTTGATGCTCAACGATATGGACAAGATCGGTGAGATCTTC
ANGGAG
BO05684.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7762-PA | 2760 | Rpn1-RA | 1..840 | 17..856 | 4181 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 140..980 | 16..856 | 4194 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19915190..19916030 | 16..856 | 4194 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:06:28 has no hits.
BO05684.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:38 Download gff for
BO05684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:02 Download gff for
BO05684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7762-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:50 Download gff for
BO05684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..980 | 16..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:25 Download gff for
BO05684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..980 | 16..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:25 Download gff for
BO05684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19915190..19916030 | 16..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:50 Download gff for
BO05684.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19908290..19909130 | 16..856 | 99 | | Plus |
BO05684.complete Sequence
2791 bp assembled on 2008-08-14
GenBank Submission: FJ630138
> BO05684.complete
GAAGTTATCAGTCGACATGACGGGCGAGACCAAGCTGGAGAAGAAGCCGC
TGAAGCCGGCGGCATCCGAAGGCGATGCCAAGGATCCGAAGGCCAAGAAG
GATGAAAAGAAGGACGGCAAGGACAAGGAGCAGCAGCCGGAGCTCTCCGA
CGAGGACCAGCAGCTGCAGGAGGAGCTGGAGCTGCTGGTGCAGCACTTGC
AGGAGCCGGATGCCAAGCTCTACCAGCCGACGCTGGAGAGTATGGCCAAA
TTGATCAGAGCCTCCACGACGTCGATGACCTCGGTGCCCAAGCCTTTGAA
GTTCATGCGCCCGCACTACGAAACCATGAAGACGGTGTACAAGCACATGC
CCAATGAGCAGGCTCGCCAGTTGTGCGCCGACATCATCTCAGTGCTCTCG
ATGACCATGGGCAGCGGCAAGGATTGCCTGGCCTACCGATTCCTCTGCGA
TCGCAAGCAGCGCATCGGGGACTGGGGCCATGAGTATGTGCGTCATTTGT
CTGGCGAAATTTCGGCCCACTATCACGATACAACGGGAGACTTTCGTGTA
CAGCTCATCGAACTGGTCAAGCAGATCATCCCGTACAATATGGAGCACAA
TGCCGAGGCTGATGCCTGCGATCTGCTGATCGAAATCGATCACTTGCACC
TGCTGAGCGACTTTGTGGACGAGTCGGCCTATCCCCGCGTCTGTCTCTAT
CTGCAGTCCTGCTATCCGTATGTTCCCGACCCGGACAACACCATTATCCT
GGAAACCGCGCTCCAGCTGTCGCGCAAGTTCAACCAGTACACACAGGCCA
TGCGACTGGCGTTGATGCTCAACGATATGGACAAGATCGGTGAGATCTTC
AAGGAGCCCAAGGAGCCGGCCATGCAGAAGCAGCTGGCCTTTATGCTGGC
CCGCCAACAGATTTGCCTGGAGCTGGATGAATTGGTGCCGGACTACGATG
ATCTCATGGAGATCATGTCGAATGCTAATCTGAACAAGCATTTCCTCAAT
CTGGCTCGCGAACTGGACATCATGGAGCCCAAAACGCCTGAGGACATTTA
CAAGTCGCATTTGGACAACTCGCGCTCCCGCTTTGCATCCATCCAGGTAG
ACTCTGCCAAGCAAAATCTGGCCGCTAGCTTTGTAAATGGTTTTGTTAAC
GCCGGTTTCGGTGTGGACAAGTTGCTGTCGGAAGACGGAAACAAATGGTT
GTACAAGAACAAGGAGCACGGCATGCTCTCGGCCACCGCATCGCTGGGTT
TGATACTTCTGTGGGATGTGGATGGTGGTCTGACCATGATCGATAAGTAC
TTGTACTCCACCGATGACAACATCAAGTCCGGCGCTTTGCTGGCTTGCGG
AATCGTCAACTGCGGCATCCGTAACGAAGTCGATCCGGCTCATGCTCTGC
TCTCCGATTATATCGACAACCAGAACTCCTGCATGCGCGTTGGCGCCATC
CTCGGTCTGGGCATCGCCTACGCTGGCTCCAATCGCTCCATTGTGATCGA
CACCCTGAAGACGGTCTTCTCGTTTGGCAGCAACAACAAGAGTTCGGCCA
GCGTGGAGATATTGGGTATTACGGCTCTGTCGCTGGGTCTCATCAGTGTT
GGTTCGTGCAATTCGGAGATCACCGAGATCTTGCTGCAGACGATTATGGG
TCTGACCAAGGCCGATCTGAAGGACACCTACACGAGGTTCCTGTTTTTGG
GTCTGGGTCTGCTTTACTTGGGCCGCCAAAAGTCCACCGAAGCCGTGATG
ATGACCTTGGAGGTTTTGGAAGAGCCGTACCGCAGCATGGCCACTACCAT
GGTGGACATTTGCGCATACGCTGGTACTGGCAACGTCCTCAAGATCCAAC
AGCTGCTCCACATCTGCTCCGATCACTACGAGACGTCCAGTGCCGATGAC
GAGAAGGAAAAGAGCAAGAAGGACAAGGGCAAGGATAAGGAAAAGGAGAA
GGAGAAAGAGAAGGAAAAGGAACGCGAGAAGGACTTGTCGGCCACCCAAT
CGATCGCCGTGCTGGGAATTGCCCTGATCGCCATGGGCGAGGACATTGGT
GCCGAAATGGCATACCGCTCGTTTGGAAACCTGCTGCGCTATTGCGAGCC
AGCCATTCGTCGGGCCGTACCACTGGCATTGGGCCTGATATCCGCCTCCA
ATCCCAAGCTGAACATCATCGACACGCTGAGCAAGTTCTCGCACGATAGC
GACGCCGAGGTGGCCCACAATGCGATCTTCGCCATGGGCTTGGTGGGCGC
CGGCACGAATAACGCTCGGCTGGCCTCCATGCTACGCCAGTTGGCGCAGT
ACCATTCTAAGGATCCCAGCAATCTGTTCATGGTGCGCATCGCCCAGAGC
TTGACGCACTTGGGCAAGGGCACGCTCTCGCTGAGTCCCTACCACAGCGA
TAGGCAGCTGATGAACCCCATGGCCGTCGCTGGACTGATGGCTACGCTGG
TTTCCCTGCTGGACGTGAAGAACCTGATACTGAACCGATCGCACTATCTG
CTCTACACACTGGTGCCTGCCATGCAGGCTCGCATGCTGATCACCTTCGA
TGAGGAGCTCAATCAGCTGCAGGTGCCCGTGCGCGTCGGCATTGCCATCG
ATGTGGTCGGCCAGGCAGGCAAGCCGAAGACCATCACCGGCTTCCAAACG
CACACCACGCCCGTCCTGCTGGCCATTGGCGAGCGCGCCGAGCTGGCCAC
CGATGAGTATCTGGCCCTCACTCCGGTCATGGAGGGCTTCGTTATACTGA
AAAAGAACCCAAATTTTGTGAAAGCAAGCTTTCTAGACCAT
BO05684.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 2760 | CG7762-PA | 1..2757 | 17..2773 | 13785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 140..2897 | 16..2773 | 13790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19915190..19917114 | 16..1940 | 9625 | 100 | Plus |
| 3L | 28110227 | 3L | 19917181..19918016 | 1938..2773 | 4180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:43:40 has no hits.
BO05684.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:44 Download gff for
BO05684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 135..2892 | 16..2773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:01 Download gff for
BO05684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 141..2897 | 17..2775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:58 Download gff for
BO05684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 136..2892 | 17..2775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:43 Download gff for
BO05684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 141..2897 | 17..2775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:43 Download gff for
BO05684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19917183..19918016 | 1940..2775 | 99 | | Plus |
| 3L | 19915191..19917113 | 17..1939 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:01 Download gff for
BO05684.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19908291..19910213 | 17..1939 | 100 | -> | Plus |
| arm_3L | 19910283..19911116 | 1940..2775 | 99 | | Plus |
BO05684.pep Sequence
Translation from 16 to 2791
> BO05684.pep
MTGETKLEKKPLKPAASEGDAKDPKAKKDEKKDGKDKEQQPELSDEDQQL
QEELELLVQHLQEPDAKLYQPTLESMAKLIRASTTSMTSVPKPLKFMRPH
YETMKTVYKHMPNEQARQLCADIISVLSMTMGSGKDCLAYRFLCDRKQRI
GDWGHEYVRHLSGEISAHYHDTTGDFRVQLIELVKQIIPYNMEHNAEADA
CDLLIEIDHLHLLSDFVDESAYPRVCLYLQSCYPYVPDPDNTIILETALQ
LSRKFNQYTQAMRLALMLNDMDKIGEIFKEPKEPAMQKQLAFMLARQQIC
LELDELVPDYDDLMEIMSNANLNKHFLNLARELDIMEPKTPEDIYKSHLD
NSRSRFASIQVDSAKQNLAASFVNGFVNAGFGVDKLLSEDGNKWLYKNKE
HGMLSATASLGLILLWDVDGGLTMIDKYLYSTDDNIKSGALLACGIVNCG
IRNEVDPAHALLSDYIDNQNSCMRVGAILGLGIAYAGSNRSIVIDTLKTV
FSFGSNNKSSASVEILGITALSLGLISVGSCNSEITEILLQTIMGLTKAD
LKDTYTRFLFLGLGLLYLGRQKSTEAVMMTLEVLEEPYRSMATTMVDICA
YAGTGNVLKIQQLLHICSDHYETSSADDEKEKSKKDKGKDKEKEKEKEKE
KEREKDLSATQSIAVLGIALIAMGEDIGAEMAYRSFGNLLRYCEPAIRRA
VPLALGLISASNPKLNIIDTLSKFSHDSDAEVAHNAIFAMGLVGAGTNNA
RLASMLRQLAQYHSKDPSNLFMVRIAQSLTHLGKGTLSLSPYHSDRQLMN
PMAVAGLMATLVSLLDVKNLILNRSHYLLYTLVPAMQARMLITFDEELNQ
LQVPVRVGIAIDVVGQAGKPKTITGFQTHTTPVLLAIGERAELATDEYLA
LTPVMEGFVILKKNPNFVKASFLDH
BO05684.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-PA | 919 | CG7762-PA | 1..919 | 1..919 | 4689 | 100 | Plus |
| Rpn2-PC | 1020 | CG11888-PC | 333..620 | 325..616 | 187 | 25.2 | Plus |
| Rpn2-PA | 1020 | CG11888-PA | 333..620 | 325..616 | 187 | 25.2 | Plus |
| Rpn2-PB | 1029 | CG11888-PB | 333..620 | 325..616 | 187 | 25.2 | Plus |
