Clone Sequence Records
BO05690.3prime Sequence
858 bp (789 high quality bases) assembled on 2005-12-02
> BO05690.3prime
ATGGTCTAGAAAGCTTGCCAACAGCTTCGGCTGGTTCCTGATATTCTCCA
AGTCCAGTTGAATATGTGGCGAAGGGGCGGTCGCCGCCATGGGAGATTGT
GGACACACCGGCTCCAGTTGCTCCTCGGGCAGCAGACGGTATTTTTTGAG
ATACTTGTACGAAGCATTGGATATGTCGTTTGGACTCTGCGCGTGGCCTA
TGTTGTCGATCGGACGCAGTGGCTCTGGATTAGGGGACTTCGGCGACGCC
CCCAGGCGCATATCCTTCATCAACTCATCCACTGGCTGGCGCAAGTATTT
CAGCGCCAGCTCGTTCATCACCATGCTCTTCTCGGTGTTGGGCTTGGCCA
GTTGAGGGATCCGCTTCGCCTGAGGCGTATTGGCCCGGTAGCCCGTAGAT
TGGGCGATCGGCGGATGTGGTCGAGGAGACGGAAACTGAGGAATCACTCG
TGCTTGTGGCGGCGGCAATGGTTCCTCCTCCTCTGCTATGTAATCCTGCA
TAATGGGAGACAAGCGTCTACCTGCTTGATTGGTGGTCAGAATATCGCAC
TGGGTGCCAGTGGTACTGCTGGCTTTTGAAATGGCTTCGGGTTTCGCTCG
CTGCTGTTGCTCCAAAATCATCTCGCAGAGATTCCGAAGCTGTTGCTGCT
CATGGCGCACGGACTCCACAAGGGATACCAGAGCCGCCAGATCACTCTTA
TTGGCCAAGTTGCTGACGTCGATGTCGGAATAGACAACCTGNGGCAGTGA
TTTTCGCGGAGGAGATGGGTTGAAGGGATCGGTCTGTGTGCCAGCACAGA
TGGTGAGGACATCTGCGTTGGAAGAGCTGGACAACGCCTAGATTGATATG
CCTGTTGC
BO05690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8262-PA | 1263 | CG8262-RA | 445..1260 | 834..19 | 4036 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1432 | CG8262-RA | 511..1351 | 858..19 | 4154 | 99.6 | Minus |
| ana2-RB | 1429 | CG8262-RB | 511..1348 | 858..19 | 4099 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8898810..8899317 | 19..526 | 2540 | 100 | Plus |
| 2R | 25286936 | 2R | 8899367..8899701 | 525..858 | 1599 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:57:35 has no hits.
BO05690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:50 Download gff for
BO05690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 420..1263 | 16..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:19 Download gff for
BO05690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 420..1263 | 16..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:49 Download gff for
BO05690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 511..1363 | 7..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:05 Download gff for
BO05690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 511..1363 | 7..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:05 Download gff for
BO05690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8898798..8899315 | 7..524 | 99 | <- | Plus |
| 2R | 8899367..8899701 | 525..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:49 Download gff for
BO05690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4786303..4786820 | 7..524 | 99 | <- | Plus |
| arm_2R | 4786872..4787206 | 525..858 | 99 | | Plus |
BO05690.5prime Sequence
804 bp (759 high quality bases) assembled on 2005-11-29
> BO05690.5prime
GAAGTTATCAGTCGACATGTTTGTTCCCGAAACGGAGGATATGCTGCCCA
GACTAGCGCCCAGGCCGAGTGCAGCAGTGCCCATGGGCCACACCAATGAG
ATTATAGGGCCCACCGTGCCGGAGGTATCCATATTGTTTGGCCAGCCGCC
GCAGGATCCGCAGATGCAGCCGCAGCAGCCAAATCATGCACATCAGGAGT
CATCCCCTCGTGCTGCACCCACCTTCGCGTCCTGGAAGAAGCAAATGCTG
CCCAGGGTCAACTTTTCGCCCATTTTGGCCACAGAACTGGGTCCTCGCAC
CGCTCCCAGCAGCAATAGTCCGTGCTCCTCGAAGGAATACCAAGTAATGC
CCCGGGATCGCAACTATGCAAGCGATGCGCAGCAGACTACCAATCATATG
AACTGCAATGCTGGTGGCTATAATGCCGAGCCCAAGCAACAGGCATATCA
ATCTAGGCGCTTGTCCAGCTCCTCCAACGCAGATGTCCTCACCATCTGTG
CTGGCACACAGACCGATCCCTTCAACCCATCTCCTCCGCGAAAATCACTG
CCCCAGGTTGTCTATTCCGACATCGACGTCAGCAACTTGGCCAATAAGAG
TGATCTGGCGGCTCTGGTATCCCTTGTGGAGTCCGTGCGCCATGAGCAGC
AACAGCTTCGGAATCTCTGCGAGATGATTTTGGAGCAACAGCAGCGAGCG
AAACCCGAAGCCATTTCAAAAGCCAGCAGTACCACTGGCACCCAGTGCGA
TATTCTGACCACCAATCAAGCAGGTAGACGCTTGTCTCCCATTATGCAGG
ATTA
BO05690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8262-PA | 1263 | CG8262-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1432 | CG8262-RA | 92..879 | 17..804 | 3940 | 100 | Plus |
| ana2-RB | 1429 | CG8262-RB | 92..876 | 17..804 | 3885 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8899367..8900120 | 770..17 | 3770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:44:54 has no hits.
BO05690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:51 Download gff for
BO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:20 Download gff for
BO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8262-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:01 Download gff for
BO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 87..878 | 12..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:32 Download gff for
BO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 87..878 | 12..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:32 Download gff for
BO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8899283..8899315 | 771..803 | 100 | <- | Minus |
| 2R | 8899367..8900125 | 12..770 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:01 Download gff for
BO05690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4786788..4786820 | 771..803 | 100 | <- | Minus |
| arm_2R | 4786872..4787630 | 12..770 | 99 | | Minus |
BO05690.complete Sequence
1294 bp (1294 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ638629
> BO05690.complete
GAAGTTATCAGTCGACATGTTTGTTCCCGAAACGGAGGATATGCTGCCCA
GACTAGCGCCCAGGCCGAGTGCAGCAGTGCCCATGGGCCACACCAATGAG
ATTATAGGGCCCACCGTGCCGGAGGTATCCATATTGTTTGGCCAGCCGCC
GCAGGATCCGCAGATGCAGCCGCAGCAGCCAAATCATGCACATCAGGAGT
CATCCCCTCGTGCTGCACCCACCTTCGCGTCCTGGAAGAAGCAAATGCTG
CCCAGGGTCAACTTTTCGCCCATTTTGGCCACAGAACTGGGTCCTCGCAC
CGCTCCCAGCAGCAATAGTCCGTGCTCCTCGAAGGAATACCAAGTAATGC
CCCGGGATCGCAACTATGCAAGCGATGCGCAGCAGACTACCAATCATATG
AACTGCAATGCTGGTGGCTATAATGCCGAGCCCAAGCAACAGGCATATCA
ATCTAGGCGCTTGTCCAGCTCCTCCAACGCAGATGTCCTCACCATCTGTG
CTGGCACACAGACCGATCCCTTCAACCCATCTCCTCCGCGAAAATCACTG
CCCCAGGTTGTCTATTCCGACATCGACGTCAGCAACTTGGCCAATAAGAG
TGATCTGGCGGCTCTGGTATCCCTTGTGGAGTCCGTGCGCCATGAGCAGC
AACAGCTTCGGAATCTCTGCGAGATGATTTTGGAGCAACAGCAGCGAGCG
AAACCCGAAGCCATTTCAAAAGCCAGCAGTACCACTGGCACCCAGTGCGA
TATTCTGACCACCAATCAAGCAGGTAGACGCTTGTCTCCCATTATGCAGG
ATTACATAGCAGAGGAGGAGGAACCATTGCCGCCGCCACAAGCACGAGTG
ATTCCTCAGTTTCCGTCTCCTCGACCACATCCGCCGATCGCCCAATCTAC
GGGCTACCGGGCCAATACGCCTCAGGCGAAGCGGATCCCTCAACTGGCCA
AGCCCAACACCGAGAAGAGCATGGTGATGAACGAGCTGGCGCTGAAATAC
TTGCGCCAGCCAGTGGATGAGTTGATGAAGGATATGCGCCTGGGGGCGTC
GCCGAAGTCCCCTAATCCAGAGCCACTGCGTCCGATCGACAACATAGGCC
ACGCGCAGAGTCCAAACGACATATCCAATGCTTCGTACAAGTATCTCAAA
AAATACCGTCTGCTGCCCGAGGAGCAACTGGAGCCGGTGTGTCCACAATC
TCCCATGGCGGCGACCGCCCCTTCGCCACATATTCAACTGGACTTGGAGA
ATATCAGGAACCAGCCGAAGCTGTTGGCAAGCTTTCTAGACCAT
BO05690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1263 | CG8262-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| ana2-RB | 1260 | CG8262-PB | 1..1257 | 17..1276 | 6220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-RA | 1432 | CG8262-RA | 92..1351 | 17..1276 | 6300 | 100 | Plus |
| ana2-RB | 1429 | CG8262-RB | 92..1348 | 17..1276 | 6220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8899367..8900120 | 770..17 | 3770 | 100 | Minus |
| 2R | 25286936 | 2R | 8898810..8899317 | 1276..769 | 2540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:20:03 has no hits.
BO05690.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:49 Download gff for
BO05690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 1..1263 | 17..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:18 Download gff for
BO05690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 77..1353 | 12..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:46 Download gff for
BO05690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 98..1351 | 23..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:50 Download gff for
BO05690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 77..1353 | 12..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:19 Download gff for
BO05690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ana2-RA | 98..1351 | 23..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:19 Download gff for
BO05690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8898807..8899315 | 771..1278 | 99 | <- | Minus |
| 2R | 8899367..8900114 | 23..770 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:46 Download gff for
BO05690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4786312..4786820 | 771..1278 | 99 | <- | Minus |
| arm_2R | 4786872..4787619 | 23..770 | 100 | | Minus |
BO05690.pep Sequence
Translation from 16 to 1294
> BO05690.pep
MFVPETEDMLPRLAPRPSAAVPMGHTNEIIGPTVPEVSILFGQPPQDPQM
QPQQPNHAHQESSPRAAPTFASWKKQMLPRVNFSPILATELGPRTAPSSN
SPCSSKEYQVMPRDRNYASDAQQTTNHMNCNAGGYNAEPKQQAYQSRRLS
SSSNADVLTICAGTQTDPFNPSPPRKSLPQVVYSDIDVSNLANKSDLAAL
VSLVESVRHEQQQLRNLCEMILEQQQRAKPEAISKASSTTGTQCDILTTN
QAGRRLSPIMQDYIAEEEEPLPPPQARVIPQFPSPRPHPPIAQSTGYRAN
TPQAKRIPQLAKPNTEKSMVMNELALKYLRQPVDELMKDMRLGASPKSPN
PEPLRPIDNIGHAQSPNDISNASYKYLKKYRLLPEEQLEPVCPQSPMAAT
APSPHIQLDLENIRNQPKLLASFLDH
BO05690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ana2-PA | 420 | CG8262-PA | 1..420 | 1..420 | 2200 | 100 | Plus |
| ana2-PB | 419 | CG8262-PB | 1..419 | 1..420 | 2184 | 99.8 | Plus |
