Clone Sequence Records
BO05693.3prime Sequence
917 bp (808 high quality bases) assembled on 2005-12-02
> BO05693.3prime
ATGGTCTAGAAAGCTTGCGTTCCGCCAGTCGGGAATCAGGTCGGGCTCAG
CTCCCATGGAGGCACTAGGCGGCATGGCGGGCGGAGCAACTGTGGGCAAG
GCTGGAGGCGATGGCTGGGCGTCCAAGGTCTCTTCGCTGGTGGTGCTCGC
ATTGCTGCAAGCCTTCAGTGAGTTGTCCGTCATGGGCAGTGGTTTGGCCA
CACCAATGCGCACCACTCCTTTCGAAGCACCCTTCAAAGCCTGCACTGCC
TGATCCAGCGAGGCGTTCTCCAGGTTAATGGAGTTCACAAACAAAAGTCG
ATCTCCGGGTATAAGGCGTCCGTCCAATTGAGCCACCCCTCCAGGGACCA
GAGAACGGATTACAATCAGCGTATCGTTGGGATCCAACGGATCTTGATAA
TCCAGAATAGAGAAGCCCAGACCGCGATCGCCCTTGACCAGCTCGATAAT
TTGCGGTTGGGACGACCACATAGCCAATCCGGTTAGTGGCTCCAGGGAGC
GCGACTTCAGCTTACTAAACGAAGCAGCGGCGGCAGCCACTGAATCTCCA
TCGGCCACGGAGCCCGCGGTGGCCAGACTACCATCTGATTTGGCCTTCAC
CAGACGATCGGTAGCAGGCAGCAGGTTCTCAAAGTTGTTGCTTAGCTTTT
TCAGGGTGTCATCAGAGAATGGGAGAAGCGAGCTGTTCCTGTTGCGACCG
CAAACCATGCGCACATCCAACGGCAGTTCCTTAAGTATAGCCACCACCTC
CAGGTGGTTCATACCCAGCAACCGCTCGCCGTTTACCTCCAGCAATTCAT
CGCCAGAGCGGAGTACTCCATTCACGCCAACGGGTCCATCAGGTAAGATT
GAACGAATATAGTGATGGGGTCGTACCTCGCGCCCTCTTTCTACGTCCAC
GGTTCCCTCAAGGGAAT
BO05693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12021-PC | 2616 | Patj-RC | 1723..2613 | 909..19 | 4430 | 99.8 | Minus |
| CG12021-PA | 2616 | Patj-RA | 1723..2613 | 909..19 | 4430 | 99.8 | Minus |
| CG12021-PB | 2616 | Patj-RB | 1723..2613 | 909..19 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 1976..2873 | 916..19 | 4445 | 99.7 | Minus |
| Patj-RA | 3264 | CG12021-RA | 2004..2901 | 916..19 | 4445 | 99.7 | Minus |
| Patj-RC | 3266 | CG12021-RC | 2006..2903 | 916..19 | 4445 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1800924..1801821 | 916..19 | 4445 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:57:05 has no hits.
BO05693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:57 Download gff for
BO05693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-PA | 1714..2616 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:28 Download gff for
BO05693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12021-PB | 1714..2616 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:53 Download gff for
BO05693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 2004..2903 | 19..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:10 Download gff for
BO05693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 2004..2903 | 19..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:10 Download gff for
BO05693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1800922..1801821 | 19..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:53 Download gff for
BO05693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1800922..1801821 | 19..917 | 99 | | Minus |
BO05693.5prime Sequence
912 bp (819 high quality bases) assembled on 2005-12-02
> BO05693.5prime
GAAGTTATCAGTCGACATGCACCTCAGCGCGGATATTTCCAGCGCCCTTC
AGCAGATCGAGGCAGTGAAGAAGGGCATCGATGAGTCCGACGACCCCAAG
CTGCAAATGCAGACGGCCGAGAGCCTTAGCACCATTCTGGGCATTCTGCA
GGATCCCGTTTTCCGCACCATCGTCCACGTGCAGGACTCGTTGTCCGAGC
TGAACGCCCAGCTGGCTCAGCATCCGTCCATGTTGCCCAACGACTTCGAC
ATCGATGTGGCCGGCAACCTTGTACTCAGTCTGAATGGTGGCGAGGTGAT
GTACGACTTTGACGAACAGCGCTCTTCCTCGCACTCCCATTCGGCTCCGG
GCAGTCCAGATAAGTCCGGAGGCGTCGGCGAGGAGCCGCGCCCGCAGAGC
CAGAACTCCAAAGGAGCCGGAGTGGCGGATCTCTACGCCACGGACTACGC
TCAGATCCAGGCCATAGAGCTGGTCAACGACGGCACGGGTCTCGGATTCG
GTATTATTGGAGCTCGCAACTCGGGAGTGATTGTAAAAACCATCCTGCCG
GGTGGCGTGGCCGATAAGGACGGACGCTTGCGCTCGGGCGACCACATCCT
CCAGATTGGAGACGTCAACCTGCACGAAATGGTATCCGAACAGGTGGCTG
CCGTGCTGAGACAGTCTGGAACCCACGTCCGCCTAGTGGTTGCCCGTCCC
GTTGAGCAGAGCGTGCCTACGCCCCAGTACGCCCTGGAACCGGGCACTGC
TGTGGTGCCCACGCGCGTCCTCGTCGATCCTGCCGAGCTGGAGCGGTACC
TCATATCTACCGGCTATCCGGAAATCTTTGGCGAGAGCTCCACGGCCTCC
ACTCCGCAGACCACACGGAAGACGATCGTTTCGTTTATCGCGGCGAGACA
TCAATGCTTATT
BO05693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12021-PC | 2616 | Patj-RC | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG12021-PA | 2616 | Patj-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG12021-PB | 2616 | Patj-RB | 1..848 | 17..864 | 4240 | 100 | Plus |
| CG12021-PC | 2616 | Patj-RC | 849..897 | 864..912 | 245 | 100 | Plus |
| CG12021-PA | 2616 | Patj-RA | 849..897 | 864..912 | 245 | 100 | Plus |
| CG12021-PB | 2616 | Patj-RB | 849..897 | 864..912 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 261..1157 | 17..912 | 4460 | 99.9 | Plus |
| Patj-RA | 3264 | CG12021-RA | 289..1185 | 17..912 | 4460 | 99.9 | Plus |
| Patj-RC | 3266 | CG12021-RC | 291..1187 | 17..912 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1799149..1800045 | 17..912 | 4435 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:58:16 has no hits.
BO05693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:58 Download gff for
BO05693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-PA | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:29 Download gff for
BO05693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12021-PB | 1..897 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:52 Download gff for
BO05693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..1187 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:51 Download gff for
BO05693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..1187 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:51 Download gff for
BO05693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1799149..1800045 | 17..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:52 Download gff for
BO05693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1799149..1800045 | 17..912 | 99 | | Plus |
BO05693.complete Sequence
2647 bp assembled on 2008-08-14
GenBank Submission: FJ630144
> BO05693.complete
GAAGTTATCAGTCGACATGCACCTCAGCGCGGATATTTCCAGCGCCCTTC
AGCAGATCGAGGCAGTGAAGAAGGGCATCGATGAGTCCGACGACCCCAAG
CTGCAAATGCAGACGGCCGAGAGCCTTAGCACCATTCTGGGCATTCTGCA
GGATCCCGTTTTCCGCACCATCGTCCACGTGCAGGACTCGTTGTCCGAGC
TGAACGCCCAGCTGGCTCAGCATCCGTCCATGTTGCCCAACGACTTCGAC
ATCGATGTGGCCGGCAACCTTGTACTCAGTCTGAATGGTGGCGAGGTGAT
GTACGACTTTGACGAACAGCGCTCTTCCTCGCACTCCCATTCGGCTCCGG
GCAGTCCAGATAAGTCCGGAGGCGTCGGCGAGGAGCCGCGCCCGCAGAGC
CAGAACTCCAAAGGAGCCGGAGTGGCGGATCTCTACGCCACGGACTACGC
TCAGATCCAGGCCATAGAGCTGGTCAACGACGGCACGGGTCTCGGATTCG
GTATTATTGGAGCTCGCAACTCGGGAGTGATTGTAAAAACCATCCTGCCG
GGTGGCGTGGCCGATAAGGACGGACGCTTGCGCTCGGGCGACCACATCCT
CCAGATTGGAGACGTCAACCTGCACGAAATGGTATCCGAACAGGTGGCTG
CCGTGCTGAGACAGTCTGGAACCCACGTCCGCCTAGTGGTTGCCCGTCCC
GTTGAGCAGAGCGTGCCTACGCCCCAGTACGCCCTGGAACCGGGCACTGC
TGTGGTGCCCACGCGCGTCCTCGTCGATCCTGCCGAGCTGGAGCGGTACC
TCATATCTACCGGCTATCCGGAAATCTTTGGCGAGAGCTCCACGGCCTCC
ACTCCGCAGACCACCACGGAAGACGATCGTTTCGTTTATCGCGGCGAGAC
ATCAATGCTTATTGATCCAAACATCGACCTAGAGGAATTGCTTGCCCTTC
CTGAAACGGAGAAGCTTCAGGTGGAGCTGAAGAAGGATGCCAACGGCCTG
GGCATCACAATTGCCGGCTATGTGTGTGAGAAAGAAGAGCTGTCTGGCAT
TTTCGTAAAGAGCGTGTCGCCCGGTTCAGCAGCGGACCTGAGTGGTCGCA
TCCGGGTCAACGATCGCATCATTGAAGTTGACGGCCAGTCGCTACAAGGC
TACTCCAACCACCAGGCCGTAGAGCTGCTTAAGAAGTCTGGTCAGGTGGT
GAACCTGCGCTTGGAACGCTACCTGAGGGGCCCCAAATTCGAGCAGCTGC
AGCAGGCTATCGCTGCGAATGACAAGCTTCCATCCAGTGCACCTGGAACG
CCTTCAAGGGCTCCCATGCCCACGCCCGTGGCCACAACGTCCTCCGCCAC
AACTACACCATCACGCAGCATCACTCGCGAGTTGGAAGAGGAAGCCTTAC
CAGCGCCAGAAGCATTCATGACCACTCCGCCGTCGGTCACCACAATGACC
ACCACCACATTAAGCTCCTTTGGAGCGGGTAAGCAACTAGTAGCAGTAAG
GGACTCCCTAGACGGCTCCACGAAGATCATACCCACGGAAGTTGTACCCT
TGGCGGATAAAACGGAGGCCAAGAACAGCGGGGTGATCACCCGTCACAAG
TACTACACCGATCCGGAACTGTCCGACGACGCCGAAACCGAAATTATTCG
CAAATGGCAGAAGATTGTGGGCTCCGATGTGGAGGTGATTGTGGCCCAGA
TCAAGAAGTTCGCGGTCGGAGGCTTGGGGATTTCCTTGGAGGGAACCGTG
GACGTAGAAGGAGGGCGCGAGGTACGACCCCATCACTATATTCGTTCAAT
CTTACCTGATGGACCCGTTGGCGTGAATGGAGTACTCCGCTCTGGCGATG
AATTGCTGGAGGTAAACGGCGAGCGGTTGCTGGGTATGAACCACCTGGAG
GTGGTGGCTATACTTAAGGAACTGCCGTTGGATGTGCGCATGGTTTGCGG
TCGCAACAGGAACAGCTCGCTTCTCCCATTCTCTGATGACACCCTGAAAA
AGCTAAGCAACAACTTTGAGAACCTGCTGCCTGCTACCGATCGTCTGGTG
AAGGCCAAATCAGATGGTAGTCTGGCCACCGCGGGCTCCGTGGCCGATGG
AGATTCAGTGGCTGCCGCCGCTGCTTCGTTTAGTAAGCTGAAGTCGCGCT
CCCTGGAGCCACTAACCGGATTGGCTATGTGGTCGTCCCAACCGCAAATT
ATCGAGCTGGTCAAGGGCGATCGCGGTCTGGGCTTCTCTATTCTGGATTA
TCAAGATCCGTTGGATCCCAACGATACGCTGATTGTAATCCGTTCTCTGG
TCCCTGGAGGGGTGGCTCAATTGGACGGACGCCTTATACCCGGAGATCGA
CTTTTGTTTGTGAACTCCATTAACCTGGAGAACGCCTCGCTGGATCAGGC
AGTGCAGGCTTTGAAGGGTGCTTCGAAAGGAGTGGTGCGCATTGGTGTGG
CCAAACCACTGCCCATGACGGACAACTCACTGAAGGCTTGCAGCAATGCG
AGCACCACCAGCGAAGAGACCTTGGACGCCCAGCCATCGCCTCCAGCCTT
GCCCACAGTTGCTCCGCCCGCCATGCCGCCTAGTGCCTCCATGGGAGCTG
AGCCCGACCTGATTCCCGACTGGCGGAACGCAAGCTTTCTAGACCAT
BO05693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 2616 | CG12021-PB | 1..2613 | 17..2629 | 13065 | 100 | Plus |
| Patj-RA | 2616 | CG12021-PA | 1..2613 | 17..2629 | 13065 | 100 | Plus |
| Patj-RC | 2616 | CG12021-PC | 1..2613 | 17..2629 | 13065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 261..2873 | 17..2629 | 13065 | 100 | Plus |
| Patj-RA | 3264 | CG12021-RA | 289..2901 | 17..2629 | 13065 | 100 | Plus |
| Patj-RC | 3266 | CG12021-RC | 291..2903 | 17..2629 | 13065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1799149..1800700 | 17..1568 | 7760 | 100 | Plus |
| 3L | 28110227 | 3L | 1800758..1801821 | 1566..2629 | 5320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:02:25 has no hits.
BO05693.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:03 Download gff for
BO05693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RB | 255..2867 | 17..2629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:34 Download gff for
BO05693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..2903 | 17..2631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:39 Download gff for
BO05693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RB | 255..2867 | 17..2631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:08 Download gff for
BO05693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 291..2903 | 17..2631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:08 Download gff for
BO05693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1799149..1800699 | 17..1567 | 100 | -> | Plus |
| 3L | 1800760..1801821 | 1568..2631 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:34 Download gff for
BO05693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1799149..1800699 | 17..1567 | 100 | -> | Plus |
| arm_3L | 1800760..1801821 | 1568..2631 | 99 | | Plus |
BO05693.pep Sequence
Translation from 16 to 2647
> BO05693.pep
MHLSADISSALQQIEAVKKGIDESDDPKLQMQTAESLSTILGILQDPVFR
TIVHVQDSLSELNAQLAQHPSMLPNDFDIDVAGNLVLSLNGGEVMYDFDE
QRSSSHSHSAPGSPDKSGGVGEEPRPQSQNSKGAGVADLYATDYAQIQAI
ELVNDGTGLGFGIIGARNSGVIVKTILPGGVADKDGRLRSGDHILQIGDV
NLHEMVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYALEPGTAVVPTR
VLVDPAELERYLISTGYPEIFGESSTASTPQTTTEDDRFVYRGETSMLID
PNIDLEELLALPETEKLQVELKKDANGLGITIAGYVCEKEELSGIFVKSV
SPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLE
RYLRGPKFEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSR
SITRELEEEALPAPEAFMTTPPSVTTMTTTTLSSFGAGKQLVAVRDSLDG
STKIIPTEVVPLADKTEAKNSGVITRHKYYTDPELSDDAETEIIRKWQKI
VGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHHYIRSILPDGP
VGVNGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRNS
SLLPFSDDTLKKLSNNFENLLPATDRLVKAKSDGSLATAGSVADGDSVAA
AAASFSKLKSRSLEPLTGLAMWSSQPQIIELVKGDRGLGFSILDYQDPLD
PNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENASLDQAVQALK
GASKGVVRIGVAKPLPMTDNSLKACSNASTTSEETLDAQPSPPALPTVAP
PAMPPSASMGAEPDLIPDWRNASFLDH
BO05693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-PB | 871 | CG12021-PB | 1..871 | 1..871 | 4380 | 100 | Plus |
| Patj-PA | 871 | CG12021-PA | 1..871 | 1..871 | 4380 | 100 | Plus |
| Patj-PC | 871 | CG12021-PC | 1..871 | 1..871 | 4380 | 100 | Plus |
| CG15803-PC | 880 | CG15803-PC | 304..865 | 312..821 | 846 | 38.7 | Plus |
| CG15803-PB | 878 | CG15803-PB | 304..863 | 312..821 | 834 | 38.6 | Plus |
| CG15803-PC | 880 | CG15803-PC | 4..124 | 141..262 | 344 | 53.3 | Plus |
