Clone BO05696 Report

Search the DGRC for BO05696

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:96
Vector:pDNR-Dual
Associated Gene/Transcriptaub-RA
Protein status:BO05696.pep: Imported from assembly
Sequenced Size:2632

Clone Sequence Records

BO05696.3prime Sequence

841 bp (808 high quality bases) assembled on 2005-09-13

> BO05696.3prime
ATGGTCTAGAAAGCTTGCCCCAAAGTACAATTGATTCTGCAGTCCTGCTG
AAGGCGCACGATTAATGGATTCGGCTACGAGGAAAGCCAATTTGTGGGCG
TAATGGCAGACAGCGGGGACTCGTATGGTTCCGCTGTAATTGTAGTACAT
ATGGGTCATCTTATAGGAGAGCATCTGCAGCTTATCGGCGTTTAGTCCCA
TGTTGTCAGAAATAACATTGTAGCTGGTAGGCGACACAGTTCCTATCCGA
ACAGCCTGGGACACTAGGAAGAAGTCGTAGCGCTCTGGCAAGGTAATAAC
GTCATCGACTACAGTGCCCGGAACTGGGTTGCGATGCCCAGTAAAGTAGC
GAGAATTAATGCGCTTGGATACAATTATAAATGTCATGCGACAGCCCTCC
TGTTTGCCAGCTGATTTGTAAATTTCGTCGAGCCTGTCCTTTAGGGTGTT
CACCTCGCTGTTTACCACCTGGTAGAGCTGACCATCGCCAACACCGTCGC
GAAAGAAGAGAATGCGCTCTGGCAAAGAACGGTGTTGCTCCTGATACGAC
CTCAGGGCGCACGCCATGTTCACCGACATCTGCTCGGACAACTCTTGGCC
CTTAATGTGTTCGTTTACGGTGGAGAAGTAGCGGAAAGACTCCTTCTGGT
CCATGGTTGCAACGAAAGCCCCATATGACTTGTTCTTATTCTTCGGTGAA
TGGCAGACATCGAAACCAACAGTCATCAGACCGTGGAGGGGGATCACTAC
CTGCCAGGGAGCTCCCATCAATTTGGCGTTCATTTGAATAACCACCTTTG
TGGCGATCGACATCAGCCCAGTTGGTTTTTGCTGTCGAGGC

BO05696.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6137-PA 2601 aub-RA 1776..2595 841..22 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
aub-RC 2808 CG6137-RC 1870..2689 841..22 4100 100 Minus
aub-RA 2825 CG6137-RA 1887..2706 841..22 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10997938..10998757 22..841 4100 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:55:04 has no hits.

BO05696.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:59 Download gff for BO05696.3prime
Subject Subject Range Query Range Percent Splice Strand
aub-PA 1776..2601 15..841 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:31 Download gff for BO05696.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6137-PA 1776..2601 15..841 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:29 Download gff for BO05696.3prime
Subject Subject Range Query Range Percent Splice Strand
aub-RA 1887..2712 15..841 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:32 Download gff for BO05696.3prime
Subject Subject Range Query Range Percent Splice Strand
aub-RA 1887..2712 15..841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:32 Download gff for BO05696.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10997931..10998757 15..841 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:29 Download gff for BO05696.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10997931..10998757 15..841 99   Plus

BO05696.5prime Sequence

861 bp (734 high quality bases) assembled on 2005-12-02

> BO05696.5prime
GAAGTTATCAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTG
GACGTGGTCGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTC
GCTCCTTCGCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCA
AGCATCCGGAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGA
TAGAGAAATCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGAT
CCGCGTGGCTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTC
ACGTCCTCCAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTA
CCGTGCAGGCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATC
TACCAGTACCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCG
ACGGTCTTTCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTG
ACGGAACCAATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGC
CCCTATGTTTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGA
AATTAAGATCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGT
TTCAGGTCCTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTG
AAGCTGGTCTCGCGCTACTACTACGATCCTCAAGCTAAGATTAATTTGGA
GAATTTCCGCATGCAATTATGGCCTGGCTATCAGACTTCGATTCGCCAGC
ACGAAAATGATATATTACTTTGTTCCCAGATATGCCACAAGGTTATGCGA
ACTGAAACCTT

BO05696.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6137-PA 2601 aub-RA 1..845 17..861 4175 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
aub-RA 2825 CG6137-RA 112..956 17..861 4195 99.8 Plus
aub-RC 2808 CG6137-RC 184..939 106..861 3735 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11000165..11000659 739..245 2475 100 Minus
2L 23513712 2L 11000785..11000925 246..106 690 99.3 Minus
2L 23513712 2L 10999985..11000108 861..738 590 98.4 Minus
2L 23513712 2L 11001269..11001365 113..17 485 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:44:59 has no hits.

BO05696.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:00 Download gff for BO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
aub-PA 1..845 17..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:32 Download gff for BO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6137-PA 1..845 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:37 Download gff for BO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
aub-RA 106..956 11..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:36 Download gff for BO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
aub-RA 106..956 11..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:36 Download gff for BO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10999985..11000106 740..861 98 <- Minus
2L 11000165..11000658 246..739 100 <- Minus
2L 11000786..11000918 113..245 100 <- Minus
2L 11001270..11001371 11..112 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:37 Download gff for BO05696.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10999985..11000106 740..861 98 <- Minus
arm_2L 11000165..11000658 246..739 100 <- Minus
arm_2L 11000786..11000918 113..245 100 <- Minus
arm_2L 11001270..11001371 11..112 96   Minus

BO05696.complete Sequence

2632 bp assembled on 2008-11-10

GenBank Submission: KX799902

> BO05696.complete
GAAGTTATCAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTG
GACGTGGTCGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTC
GCTCCTTCGCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCA
AGCATCCGGAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGA
TAGAGAAATCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGAT
CCGCGTGGCTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTC
ACGTCCTCCAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTA
CCGTGCAGGCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATC
TACCAGTACCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCG
ACGGTCTTTCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTG
ACGGAACCAATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGC
CCCTATGTTTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGA
AATTAAGATCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGT
TTCAGGTCCTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTG
AAGCTGGTCTCGCGCTACTACTACGATCCTCAAGCTAAGATTAATTTGGA
GAATTTCCGCATGCAATTATGGCCTGGCTATCAGACTTCGATTCGCCAGC
ACGAAAATGATATATTACTTTGTTCCGAGATATGCCACAAGGTTATGCGA
ACTGAGACCTTGTACAATATTTTGTCCGATGCTATTCGCGACAGTGACGA
TTATCAAAGTACATTTAAGCGTGCAGTAATGGGTATGGTAATACTAACGG
ATTATAATAACAAAACCTATCGCATTGACGATGTCGACTTTCAATCGACG
CCATTGTGCAAATTTAAAACCAATGACGGTGAGATTTCGTACGTGGATTA
CTATAAGAAGCGATACAACATAATCATTCGCGACTTGAAGCAACCTCTGG
TCATGTCTCGTCCGACAGACAAAAATATTCGTGGTGGAAATGACCAGGCC
ATAATGATCATTCCCGAGCTGGCACGGGCTACGGGAATGACGGACGCTAT
GCGCGCTGACTTTAGGACGTTGAGGGCCATGAGTGAACATACCAGGCTGA
ATCCAGATCGTCGCATCGAACGCCTTCGCATGTTCAACAAGCGCTTAAAG
TCGTGTAAACAGAGTGTAGAGACCCTTAAGTCCTGGAACATCGAGCTGGA
CTCCGCCTTGGTGGAGATTCCAGCACGCGTGTTGCCACCGGAAAAAATAT
TATTCGGCAACCAAAAAATATTCGTATGCGACGCTCGCGCCGATTGGACC
AATGAGTTTCGCACCTGTTCGATGTTTAAAAACGTGCATATCAATAGGTG
GTATGTGATCACACCGAGTCGAAATCTGCGCGAGACCCAGGAATTTGTGC
AGATGTGCATCCGCACAGCCAGCAGCATGAAGATGAACATCTGCAATCCA
ATATATGAGGAAATTCCGGATGACCGCAACGGCACTTACTCCCAAGCGAT
CGACAACGCCGCAGCTAACGATCCACAGATCGTGATGGTTGTCATGAGAT
CTCCAAATGAAGAGAAATATAGCTGCATTAAAAAACGCACGTGCGTGGAC
AGACCGGTGCCATCGCAGGTGGTGACACTAAAAGTTATCGCGCCTCGACA
GCAAAAACCAACTGGGCTGATGTCGATCGCCACAAAGGTGGTTATTCAAA
TGAACGCCAAATTGATGGGAGCTCCCTGGCAGGTAGTGATCCCCCTCCAC
GGTCTGATGACTGTTGGTTTCGATGTCTGCCATTCACCGAAGAATAAGAA
CAAGTCATATGGGGCTTTCGTTGCAACCATGGACCAGAAGGAGTCTTTCC
GCTACTTCTCCACCGTAAACGAACACATTAAGGGCCAAGAGTTGTCCGAG
CAGATGTCGGTGAACATGGCGTGCGCCCTGAGGTCGTATCAGGAGCAACA
CCGTTCTTTGCCAGAGCGCATTCTCTTCTTTCGCGACGGTGTTGGCGATG
GTCAGCTCTACCAGGTGGTAAACAGCGAGGTGAACACCCTAAAGGACAGG
CTCGACGAAATTTACAAATCAGCTGGCAAACAGGAGGGCTGTCGCATGAC
ATTTATAATTGTATCCAAGCGCATTAATTCTCGCTACTTTACTGGGCATC
GCAACCCAGTTCCGGGCACTGTAGTCGATGACGTTATTACCTTGCCAGAG
CGCTACGACTTCTTCCTAGTGTCCCAGGCTGTTCGGATAGGAACTGTGTC
GCCTACCAGCTACAATGTTATTTCTGACAACATGGGACTAAACGCCGATA
AGCTGCAGATGCTCTCCTATAAGATGACCCATATGTACTACAATTACAGC
GGAACCATACGAGTCCCCGCTGTCTGCCATTACGCCCACAAATTGGCTTT
CCTCGTAGCCGAATCCATTAATCGTGCGCCTTCAGCAGGACTGCAGAATC
AATTGTACTTTTTGGCAAGCTTTCTAGACCAT

BO05696.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
aub-RA 2601 CG6137-PA 1..2598 17..2614 12990 100 Plus
aub-RC 2388 CG6137-PC 1..2385 230..2614 11925 100 Plus
piwi-RB 2532 CG6122-PB 698..788 768..858 185 80.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
aub-RA 2825 CG6137-RA 112..2709 17..2614 12990 100 Plus
aub-RC 2808 CG6137-RC 184..2692 106..2614 12530 100 Plus
piwi-RB 2969 CG6122-RB 786..876 768..858 185 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10997935..10998832 2614..1717 4490 100 Minus
2L 23513712 2L 11000165..11000659 739..245 2475 100 Minus
2L 23513712 2L 10999061..10999452 1605..1214 1960 100 Minus
2L 23513712 2L 10999912..11000108 934..738 985 100 Minus
2L 23513712 2L 10999517..10999674 1216..1059 790 100 Minus
2L 23513712 2L 11000785..11000925 246..106 690 99.3 Minus
2L 23513712 2L 10999727..10999855 1060..932 645 100 Minus
2L 23513712 2L 10998897..10999007 1716..1606 555 100 Minus
2L 23513712 2L 11001269..11001365 113..17 485 100 Minus
2L 23513712 2L 10985369..10985459 858..768 185 80.2 Minus
Blast to na_te.dros performed on 2014-11-27 15:33:38 has no hits.

BO05696.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:02 Download gff for BO05696.complete
Subject Subject Range Query Range Percent Splice Strand
aub-RA 119..2729 11..2621 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:55 Download gff for BO05696.complete
Subject Subject Range Query Range Percent Splice Strand
aub-RA 112..2709 17..2616 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:22 Download gff for BO05696.complete
Subject Subject Range Query Range Percent Splice Strand
aub-RA 125..2722 17..2616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:51 Download gff for BO05696.complete
Subject Subject Range Query Range Percent Splice Strand
aub-RA 112..2709 17..2616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:51 Download gff for BO05696.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10999914..11000106 740..932 100 <- Minus
2L 10997933..10998832 1717..2616 99 <- Minus
2L 10998897..10999007 1606..1716 100 <- Minus
2L 10999061..10999450 1216..1605 100 <- Minus
2L 10999518..10999672 1061..1215 100 <- Minus
2L 10999727..10999854 933..1060 100 <- Minus
2L 11000165..11000658 246..739 100 <- Minus
2L 11000786..11000918 113..245 100 <- Minus
2L 11001270..11001365 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:55 Download gff for BO05696.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10997933..10998832 1717..2616 99 <- Minus
arm_2L 10998897..10999007 1606..1716 100 <- Minus
arm_2L 10999061..10999450 1216..1605 100 <- Minus
arm_2L 10999518..10999672 1061..1215 100 <- Minus
arm_2L 10999727..10999854 933..1060 100 <- Minus
arm_2L 10999914..11000106 740..932 100 <- Minus
arm_2L 11000165..11000658 246..739 100 <- Minus
arm_2L 11000786..11000918 113..245 100 <- Minus
arm_2L 11001270..11001365 17..112 100   Minus

BO05696.pep Sequence

Translation from 16 to 2632

> BO05696.pep
MNLPPNPVIARGRGRGRKPNNVEANRGFAPSLGQKSDPSHSEGNQASGGN
GGGGDAQVGPSIEKSSLSAVQMHKSEGDPRGSVRGRRLITDLVYSRPPGM
TSKKGVVGTHITVQANYFKVLKRPNWTIYQYRVDFTPDVEATRLRRSFLY
EHKGILGGYIFDGTNMFCINQFKAVQDSPYVLELVTKSRAGENIEIKIKA
VGSVQSTDAEQFQVLNLILRRAMEGLDLKLVSRYYYDPQAKINLENFRMQ
LWPGYQTSIRQHENDILLCSEICHKVMRTETLYNILSDAIRDSDDYQSTF
KRAVMGMVILTDYNNKTYRIDDVDFQSTPLCKFKTNDGEISYVDYYKKRY
NIIIRDLKQPLVMSRPTDKNIRGGNDQAIMIIPELARATGMTDAMRADFR
TLRAMSEHTRLNPDRRIERLRMFNKRLKSCKQSVETLKSWNIELDSALVE
IPARVLPPEKILFGNQKIFVCDARADWTNEFRTCSMFKNVHINRWYVITP
SRNLRETQEFVQMCIRTASSMKMNICNPIYEEIPDDRNGTYSQAIDNAAA
NDPQIVMVVMRSPNEEKYSCIKKRTCVDRPVPSQVVTLKVIAPRQQKPTG
LMSIATKVVIQMNAKLMGAPWQVVIPLHGLMTVGFDVCHSPKNKNKSYGA
FVATMDQKESFRYFSTVNEHIKGQELSEQMSVNMACALRSYQEQHRSLPE
RILFFRDGVGDGQLYQVVNSEVNTLKDRLDEIYKSAGKQEGCRMTFIIVS
KRINSRYFTGHRNPVPGTVVDDVITLPERYDFFLVSQAVRIGTVSPTSYN
VISDNMGLNADKLQMLSYKMTHMYYNYSGTIRVPAVCHYAHKLAFLVAES
INRAPSAGLQNQLYFLASFLDH

BO05696.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
aub-PA 866 CG6137-PA 1..866 1..866 4522 100 Plus
aub-PC 795 CG6137-PC 1..795 72..866 4151 100 Plus
piwi-PB 843 CG6122-PB 12..843 38..866 1773 43.3 Plus
piwi-PA 843 CG6122-PA 12..843 38..866 1773 43.3 Plus
AGO3-PF 867 CG40300-PF 122..867 105..866 1155 32.5 Plus