Clone Sequence Records
BO05696.3prime Sequence
841 bp (808 high quality bases) assembled on 2005-09-13
> BO05696.3prime
ATGGTCTAGAAAGCTTGCCCCAAAGTACAATTGATTCTGCAGTCCTGCTG
AAGGCGCACGATTAATGGATTCGGCTACGAGGAAAGCCAATTTGTGGGCG
TAATGGCAGACAGCGGGGACTCGTATGGTTCCGCTGTAATTGTAGTACAT
ATGGGTCATCTTATAGGAGAGCATCTGCAGCTTATCGGCGTTTAGTCCCA
TGTTGTCAGAAATAACATTGTAGCTGGTAGGCGACACAGTTCCTATCCGA
ACAGCCTGGGACACTAGGAAGAAGTCGTAGCGCTCTGGCAAGGTAATAAC
GTCATCGACTACAGTGCCCGGAACTGGGTTGCGATGCCCAGTAAAGTAGC
GAGAATTAATGCGCTTGGATACAATTATAAATGTCATGCGACAGCCCTCC
TGTTTGCCAGCTGATTTGTAAATTTCGTCGAGCCTGTCCTTTAGGGTGTT
CACCTCGCTGTTTACCACCTGGTAGAGCTGACCATCGCCAACACCGTCGC
GAAAGAAGAGAATGCGCTCTGGCAAAGAACGGTGTTGCTCCTGATACGAC
CTCAGGGCGCACGCCATGTTCACCGACATCTGCTCGGACAACTCTTGGCC
CTTAATGTGTTCGTTTACGGTGGAGAAGTAGCGGAAAGACTCCTTCTGGT
CCATGGTTGCAACGAAAGCCCCATATGACTTGTTCTTATTCTTCGGTGAA
TGGCAGACATCGAAACCAACAGTCATCAGACCGTGGAGGGGGATCACTAC
CTGCCAGGGAGCTCCCATCAATTTGGCGTTCATTTGAATAACCACCTTTG
TGGCGATCGACATCAGCCCAGTTGGTTTTTGCTGTCGAGGC
BO05696.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6137-PA | 2601 | aub-RA | 1776..2595 | 841..22 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aub-RC | 2808 | CG6137-RC | 1870..2689 | 841..22 | 4100 | 100 | Minus |
aub-RA | 2825 | CG6137-RA | 1887..2706 | 841..22 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10997938..10998757 | 22..841 | 4100 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:55:04 has no hits.
BO05696.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:59 Download gff for
BO05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-PA | 1776..2601 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:31 Download gff for
BO05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6137-PA | 1776..2601 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:29 Download gff for
BO05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 1887..2712 | 15..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:32 Download gff for
BO05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 1887..2712 | 15..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:32 Download gff for
BO05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10997931..10998757 | 15..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:29 Download gff for
BO05696.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10997931..10998757 | 15..841 | 99 | | Plus |
BO05696.5prime Sequence
861 bp (734 high quality bases) assembled on 2005-12-02
> BO05696.5prime
GAAGTTATCAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTG
GACGTGGTCGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTC
GCTCCTTCGCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCA
AGCATCCGGAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGA
TAGAGAAATCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGAT
CCGCGTGGCTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTC
ACGTCCTCCAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTA
CCGTGCAGGCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATC
TACCAGTACCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCG
ACGGTCTTTCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTG
ACGGAACCAATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGC
CCCTATGTTTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGA
AATTAAGATCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGT
TTCAGGTCCTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTG
AAGCTGGTCTCGCGCTACTACTACGATCCTCAAGCTAAGATTAATTTGGA
GAATTTCCGCATGCAATTATGGCCTGGCTATCAGACTTCGATTCGCCAGC
ACGAAAATGATATATTACTTTGTTCCCAGATATGCCACAAGGTTATGCGA
ACTGAAACCTT
BO05696.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6137-PA | 2601 | aub-RA | 1..845 | 17..861 | 4175 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aub-RA | 2825 | CG6137-RA | 112..956 | 17..861 | 4195 | 99.8 | Plus |
aub-RC | 2808 | CG6137-RC | 184..939 | 106..861 | 3735 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11000165..11000659 | 739..245 | 2475 | 100 | Minus |
2L | 23513712 | 2L | 11000785..11000925 | 246..106 | 690 | 99.3 | Minus |
2L | 23513712 | 2L | 10999985..11000108 | 861..738 | 590 | 98.4 | Minus |
2L | 23513712 | 2L | 11001269..11001365 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:44:59 has no hits.
BO05696.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:00 Download gff for
BO05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:32 Download gff for
BO05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6137-PA | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:37 Download gff for
BO05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 106..956 | 11..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:36 Download gff for
BO05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 106..956 | 11..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:36 Download gff for
BO05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10999985..11000106 | 740..861 | 98 | <- | Minus |
2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
2L | 11001270..11001371 | 11..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:37 Download gff for
BO05696.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10999985..11000106 | 740..861 | 98 | <- | Minus |
arm_2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
arm_2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
arm_2L | 11001270..11001371 | 11..112 | 96 | | Minus |
BO05696.complete Sequence
2632 bp assembled on 2008-11-10
GenBank Submission: KX799902
> BO05696.complete
GAAGTTATCAGTCGACATGAATTTACCACCAAACCCTGTAATTGCTCGTG
GACGTGGTCGAGGAAGAAAGCCCAATAATGTAGAGGCCAATCGCGGCTTC
GCTCCTTCGCTGGGTCAGAAGTCGGACCCTTCCCACTCGGAAGGAAATCA
AGCATCCGGAGGCAATGGTGGTGGTGGTGATGCTCAAGTGGGTCCCTCGA
TAGAGAAATCCAGTTTGAGCGCGGTGCAAATGCACAAGTCCGAGGGCGAT
CCGCGTGGCTCCGTGCGCGGCCGTAGGCTAATAACGGATTTGGTGTATTC
ACGTCCTCCAGGGATGACCAGCAAGAAAGGAGTGGTTGGCACTCATATTA
CCGTGCAGGCAAACTATTTTAAGGTATTAAAGCGTCCAAACTGGACCATC
TACCAGTACCGCGTCGATTTTACGCCTGATGTGGAGGCTACACGACTGCG
ACGGTCTTTCTTGTATGAACATAAAGGGATCCTGGGCGGCTACATCTTTG
ACGGAACCAATATGTTTTGCATCAATCAGTTCAAAGCTGTTCAAGATAGC
CCCTATGTTTTGGAACTGGTTACGAAGAGTCGTGCTGGCGAAAACATTGA
AATTAAGATCAAGGCTGTTGGATCTGTGCAATCTACGGATGCCGAGCAGT
TTCAGGTCCTTAATCTCATACTGCGCAGGGCCATGGAGGGCTTAGACTTG
AAGCTGGTCTCGCGCTACTACTACGATCCTCAAGCTAAGATTAATTTGGA
GAATTTCCGCATGCAATTATGGCCTGGCTATCAGACTTCGATTCGCCAGC
ACGAAAATGATATATTACTTTGTTCCGAGATATGCCACAAGGTTATGCGA
ACTGAGACCTTGTACAATATTTTGTCCGATGCTATTCGCGACAGTGACGA
TTATCAAAGTACATTTAAGCGTGCAGTAATGGGTATGGTAATACTAACGG
ATTATAATAACAAAACCTATCGCATTGACGATGTCGACTTTCAATCGACG
CCATTGTGCAAATTTAAAACCAATGACGGTGAGATTTCGTACGTGGATTA
CTATAAGAAGCGATACAACATAATCATTCGCGACTTGAAGCAACCTCTGG
TCATGTCTCGTCCGACAGACAAAAATATTCGTGGTGGAAATGACCAGGCC
ATAATGATCATTCCCGAGCTGGCACGGGCTACGGGAATGACGGACGCTAT
GCGCGCTGACTTTAGGACGTTGAGGGCCATGAGTGAACATACCAGGCTGA
ATCCAGATCGTCGCATCGAACGCCTTCGCATGTTCAACAAGCGCTTAAAG
TCGTGTAAACAGAGTGTAGAGACCCTTAAGTCCTGGAACATCGAGCTGGA
CTCCGCCTTGGTGGAGATTCCAGCACGCGTGTTGCCACCGGAAAAAATAT
TATTCGGCAACCAAAAAATATTCGTATGCGACGCTCGCGCCGATTGGACC
AATGAGTTTCGCACCTGTTCGATGTTTAAAAACGTGCATATCAATAGGTG
GTATGTGATCACACCGAGTCGAAATCTGCGCGAGACCCAGGAATTTGTGC
AGATGTGCATCCGCACAGCCAGCAGCATGAAGATGAACATCTGCAATCCA
ATATATGAGGAAATTCCGGATGACCGCAACGGCACTTACTCCCAAGCGAT
CGACAACGCCGCAGCTAACGATCCACAGATCGTGATGGTTGTCATGAGAT
CTCCAAATGAAGAGAAATATAGCTGCATTAAAAAACGCACGTGCGTGGAC
AGACCGGTGCCATCGCAGGTGGTGACACTAAAAGTTATCGCGCCTCGACA
GCAAAAACCAACTGGGCTGATGTCGATCGCCACAAAGGTGGTTATTCAAA
TGAACGCCAAATTGATGGGAGCTCCCTGGCAGGTAGTGATCCCCCTCCAC
GGTCTGATGACTGTTGGTTTCGATGTCTGCCATTCACCGAAGAATAAGAA
CAAGTCATATGGGGCTTTCGTTGCAACCATGGACCAGAAGGAGTCTTTCC
GCTACTTCTCCACCGTAAACGAACACATTAAGGGCCAAGAGTTGTCCGAG
CAGATGTCGGTGAACATGGCGTGCGCCCTGAGGTCGTATCAGGAGCAACA
CCGTTCTTTGCCAGAGCGCATTCTCTTCTTTCGCGACGGTGTTGGCGATG
GTCAGCTCTACCAGGTGGTAAACAGCGAGGTGAACACCCTAAAGGACAGG
CTCGACGAAATTTACAAATCAGCTGGCAAACAGGAGGGCTGTCGCATGAC
ATTTATAATTGTATCCAAGCGCATTAATTCTCGCTACTTTACTGGGCATC
GCAACCCAGTTCCGGGCACTGTAGTCGATGACGTTATTACCTTGCCAGAG
CGCTACGACTTCTTCCTAGTGTCCCAGGCTGTTCGGATAGGAACTGTGTC
GCCTACCAGCTACAATGTTATTTCTGACAACATGGGACTAAACGCCGATA
AGCTGCAGATGCTCTCCTATAAGATGACCCATATGTACTACAATTACAGC
GGAACCATACGAGTCCCCGCTGTCTGCCATTACGCCCACAAATTGGCTTT
CCTCGTAGCCGAATCCATTAATCGTGCGCCTTCAGCAGGACTGCAGAATC
AATTGTACTTTTTGGCAAGCTTTCTAGACCAT
BO05696.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aub-RA | 2601 | CG6137-PA | 1..2598 | 17..2614 | 12990 | 100 | Plus |
aub-RC | 2388 | CG6137-PC | 1..2385 | 230..2614 | 11925 | 100 | Plus |
piwi-RB | 2532 | CG6122-PB | 698..788 | 768..858 | 185 | 80.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aub-RA | 2825 | CG6137-RA | 112..2709 | 17..2614 | 12990 | 100 | Plus |
aub-RC | 2808 | CG6137-RC | 184..2692 | 106..2614 | 12530 | 100 | Plus |
piwi-RB | 2969 | CG6122-RB | 786..876 | 768..858 | 185 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10997935..10998832 | 2614..1717 | 4490 | 100 | Minus |
2L | 23513712 | 2L | 11000165..11000659 | 739..245 | 2475 | 100 | Minus |
2L | 23513712 | 2L | 10999061..10999452 | 1605..1214 | 1960 | 100 | Minus |
2L | 23513712 | 2L | 10999912..11000108 | 934..738 | 985 | 100 | Minus |
2L | 23513712 | 2L | 10999517..10999674 | 1216..1059 | 790 | 100 | Minus |
2L | 23513712 | 2L | 11000785..11000925 | 246..106 | 690 | 99.3 | Minus |
2L | 23513712 | 2L | 10999727..10999855 | 1060..932 | 645 | 100 | Minus |
2L | 23513712 | 2L | 10998897..10999007 | 1716..1606 | 555 | 100 | Minus |
2L | 23513712 | 2L | 11001269..11001365 | 113..17 | 485 | 100 | Minus |
2L | 23513712 | 2L | 10985369..10985459 | 858..768 | 185 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:33:38 has no hits.
BO05696.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:02 Download gff for
BO05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 119..2729 | 11..2621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:55 Download gff for
BO05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 112..2709 | 17..2616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:22 Download gff for
BO05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 125..2722 | 17..2616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:51 Download gff for
BO05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aub-RA | 112..2709 | 17..2616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:51 Download gff for
BO05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10999914..11000106 | 740..932 | 100 | <- | Minus |
2L | 10997933..10998832 | 1717..2616 | 99 | <- | Minus |
2L | 10998897..10999007 | 1606..1716 | 100 | <- | Minus |
2L | 10999061..10999450 | 1216..1605 | 100 | <- | Minus |
2L | 10999518..10999672 | 1061..1215 | 100 | <- | Minus |
2L | 10999727..10999854 | 933..1060 | 100 | <- | Minus |
2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
2L | 11001270..11001365 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:55 Download gff for
BO05696.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10997933..10998832 | 1717..2616 | 99 | <- | Minus |
arm_2L | 10998897..10999007 | 1606..1716 | 100 | <- | Minus |
arm_2L | 10999061..10999450 | 1216..1605 | 100 | <- | Minus |
arm_2L | 10999518..10999672 | 1061..1215 | 100 | <- | Minus |
arm_2L | 10999727..10999854 | 933..1060 | 100 | <- | Minus |
arm_2L | 10999914..11000106 | 740..932 | 100 | <- | Minus |
arm_2L | 11000165..11000658 | 246..739 | 100 | <- | Minus |
arm_2L | 11000786..11000918 | 113..245 | 100 | <- | Minus |
arm_2L | 11001270..11001365 | 17..112 | 100 | | Minus |
BO05696.pep Sequence
Translation from 16 to 2632
> BO05696.pep
MNLPPNPVIARGRGRGRKPNNVEANRGFAPSLGQKSDPSHSEGNQASGGN
GGGGDAQVGPSIEKSSLSAVQMHKSEGDPRGSVRGRRLITDLVYSRPPGM
TSKKGVVGTHITVQANYFKVLKRPNWTIYQYRVDFTPDVEATRLRRSFLY
EHKGILGGYIFDGTNMFCINQFKAVQDSPYVLELVTKSRAGENIEIKIKA
VGSVQSTDAEQFQVLNLILRRAMEGLDLKLVSRYYYDPQAKINLENFRMQ
LWPGYQTSIRQHENDILLCSEICHKVMRTETLYNILSDAIRDSDDYQSTF
KRAVMGMVILTDYNNKTYRIDDVDFQSTPLCKFKTNDGEISYVDYYKKRY
NIIIRDLKQPLVMSRPTDKNIRGGNDQAIMIIPELARATGMTDAMRADFR
TLRAMSEHTRLNPDRRIERLRMFNKRLKSCKQSVETLKSWNIELDSALVE
IPARVLPPEKILFGNQKIFVCDARADWTNEFRTCSMFKNVHINRWYVITP
SRNLRETQEFVQMCIRTASSMKMNICNPIYEEIPDDRNGTYSQAIDNAAA
NDPQIVMVVMRSPNEEKYSCIKKRTCVDRPVPSQVVTLKVIAPRQQKPTG
LMSIATKVVIQMNAKLMGAPWQVVIPLHGLMTVGFDVCHSPKNKNKSYGA
FVATMDQKESFRYFSTVNEHIKGQELSEQMSVNMACALRSYQEQHRSLPE
RILFFRDGVGDGQLYQVVNSEVNTLKDRLDEIYKSAGKQEGCRMTFIIVS
KRINSRYFTGHRNPVPGTVVDDVITLPERYDFFLVSQAVRIGTVSPTSYN
VISDNMGLNADKLQMLSYKMTHMYYNYSGTIRVPAVCHYAHKLAFLVAES
INRAPSAGLQNQLYFLASFLDH
BO05696.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aub-PA | 866 | CG6137-PA | 1..866 | 1..866 | 4522 | 100 | Plus |
aub-PC | 795 | CG6137-PC | 1..795 | 72..866 | 4151 | 100 | Plus |
piwi-PB | 843 | CG6122-PB | 12..843 | 38..866 | 1773 | 43.3 | Plus |
piwi-PA | 843 | CG6122-PA | 12..843 | 38..866 | 1773 | 43.3 | Plus |
AGO3-PF | 867 | CG40300-PF | 122..867 | 105..866 | 1155 | 32.5 | Plus |