Clone Sequence Records
BO05705.3prime Sequence
894 bp (705 high quality bases) assembled on 2005-12-02
> BO05705.3prime
ATGGTCTAGAAAGCTTGCTCCCTGCTTGTTCGGCGGCTCCTTTAGCCGCA
TGTGCGGCTCCGCGGAAATGGGTTTTGCCACTTTCGTGGGATCGAACTTG
TACGTCTTGACCAGCGGACCCTTGCCGGCCTTGGCGAATCGGATCTCGTC
CAGGCGCTGTCGCTCCTCGATTTCTTTCGAGATCTTCATGTTGTCCCAGG
ACTCCTTCATTCCGCCGACGAATCCCTTCTTAGGTGGCAGTGCACTGGGC
GCATGGGTCAGCATCTTTTCGATCTTGAAGTACTCCCTCACGGAGGGAAT
CCTTAGCACCGCAACCTGCCCCAACGATATAAAGTTACTGCACGCCCAAT
AGGTCAAAATGGCAGCGGGGAAGTTCATCGTAAACGGGAAGATAACAATG
GGCAGGGCTCTGAGCACATATTTCATGGTGTTCATGTTGGCAGCCGATAA
GCGAGCCGAATCCGTTCCGATCTCAATGGTCAGGTACAACGTGGCACTGG
TGATTAAGGGCAGTAGATAGAAGGGATCCGCCATTGTGAGATCCGTGAAC
CAGAAGAGTCCGCCATCCCGCATTGATTCGACCGGCGCGTTAGCCATCTG
TCGCAGTCCCATGAAGAAGCTAATGAAGAGCGGTGCCTGGGCCAAGGGAA
CTACCATGTTCTTGAGCGGATTGACACCCTTCTCCCGCATGAACAGCATC
ATTTCCTGGGCATAACGAGCGGACTCAATGGCGTTTCCCGACTGCCTGGC
CTCGGTCATTTTCAGCTGCAGCATCTGCATCTGCGGCATATTGTTGTTCA
TCTTGGCAGAGTTCCTTTGGGCCAAGATGACCAATGGAAAGATTATGGTT
CGCACTGCGAGTGTTCCAATGGCGATGGTTCCCCACCAGGGAAT
BO05705.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6404-PB | 1326 | CG6404-RB | 448..1323 | 894..19 | 4380 | 100 | Minus |
CG6404-PA | 1326 | CG6404-RA | 448..1323 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6404-RA | 1605 | CG6404-RA | 513..1388 | 894..19 | 4380 | 100 | Minus |
CG6404-RB | 1815 | CG6404-RB | 724..1599 | 894..19 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10884734..10885427 | 201..894 | 3470 | 100 | Plus |
3L | 28110227 | 3L | 10884478..10884659 | 19..200 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:45:06 has no hits.
BO05705.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:07 Download gff for
BO05705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-PB | 448..1326 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:43 Download gff for
BO05705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-PA | 448..1326 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:04 Download gff for
BO05705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RB | 724..1604 | 11..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:31 Download gff for
BO05705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RB | 724..1604 | 11..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:31 Download gff for
BO05705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10884473..10884659 | 11..200 | 97 | <- | Plus |
3L | 10884734..10885427 | 201..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:04 Download gff for
BO05705.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10877573..10877759 | 11..200 | 97 | <- | Plus |
arm_3L | 10877834..10878527 | 201..894 | 100 | | Plus |
BO05705.5prime Sequence
917 bp (849 high quality bases) assembled on 2005-11-29
> BO05705.5prime
GAAGTTATCAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAA
CAAACGCGGCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAG
GCATCCACGGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGG
CAGCAGTCTGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGC
TTCGTTTCGCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAA
GGCGAGGAGTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCC
GGACATACCCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAA
TGGATGTGATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTG
GGCGGCTGGTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCA
CTGCACGTGGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCG
CAGTGCGAACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCT
GCCAAGATGAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAAT
GACCGAGGCCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCC
AGGAAATGATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAAC
ATGGTAGTTCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGG
ACTGCGACAGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGAC
TCTTCTGGTTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCC
TTAATCACCAGTGCCACGTTGTACCTGACCATTGAGATCGGAACGGATTC
GGCTCGCTTATCGGCTG
BO05705.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6404-PB | 1326 | CG6404-RB | 1..901 | 17..917 | 4505 | 100 | Plus |
CG6404-PA | 1326 | CG6404-RA | 1..901 | 17..917 | 4505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6404-RA | 1605 | CG6404-RA | 66..966 | 17..917 | 4505 | 100 | Plus |
CG6404-RB | 1815 | CG6404-RB | 277..1177 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10884974..10885793 | 917..98 | 4100 | 100 | Minus |
3L | 28110227 | 3L | 10885901..10885985 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:45:17 has no hits.
BO05705.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:08 Download gff for
BO05705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-PB | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:44 Download gff for
BO05705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-PA | 1..901 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:06 Download gff for
BO05705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RB | 277..1177 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:24 Download gff for
BO05705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RB | 277..1177 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:24 Download gff for
BO05705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10885902..10885985 | 17..100 | 100 | | Minus |
3L | 10884974..10885790 | 101..917 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:06 Download gff for
BO05705.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10878074..10878890 | 101..917 | 100 | <- | Minus |
arm_3L | 10879002..10879085 | 17..100 | 100 | | Minus |
BO05705.complete Sequence
1357 bp (1357 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630145
> BO05705.complete
GAAGTTATCAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAA
CAAACGCGGCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAG
GCATCCACGGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGG
CAGCAGTCTGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGC
TTCGTTTCGCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAA
GGCGAGGAGTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCC
GGACATACCCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAA
TGGATGTGATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTG
GGCGGCTGGTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCA
CTGCACGTGGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCG
CAGTGCGAACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCT
GCCAAGATGAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAAT
GACCGAGGCCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCC
AGGAAATGATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAAC
ATGGTAGTTCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGG
ACTGCGACAGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGAC
TCTTCTGGTTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCC
TTAATCACCAGTGCCACGTTGTACCTGACCATTGAGATCGGAACGGATTC
GGCTCGCTTATCGGCTGCCAACATGAACACCATGAAATATGTGCTCAGAG
CCCTGCCCATTGTTATCTTCCCGTTTACGATGAACTTCCCCGCTGCCATT
TTGACCTATTGGGCGTGCAGTAACTTTATATCGTTGGGGCAGGTTGCGGT
GCTAAGGATTCCCTCCGTGAGGGAGTACTTCAAGATCGAAAAGATGCTGA
CCCATGCGCCCAGTGCACTGCCACCTAAGAAGGGATTCGTCGGCGGAATG
AAGGAGTCCTGGGACAACATGAAGATCTCGAAAGAAATCGAGGAGCGACA
GCGCCTGGACGAGATCCGATTCGCCAAGGCCGGCAAGGGTCCGCTGGTCA
AGACGTACAAGTTCGATCCCACGAAAGTGGCAAAACCCATTTCCGCGGAG
CCGCACATGCGGCTAAAGGAGCCGCCGAACAAGCAGGGAGCAAGCTTTCT
AGACCAT
BO05705.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6404-RA | 1326 | CG6404-PA | 1..1323 | 17..1339 | 6615 | 100 | Plus |
CG6404-RB | 1326 | CG6404-PB | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6404-RA | 1605 | CG6404-RA | 66..1388 | 17..1339 | 6615 | 100 | Plus |
CG6404-RB | 1815 | CG6404-RB | 277..1599 | 17..1339 | 6615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10884734..10885793 | 1157..98 | 5300 | 100 | Minus |
3L | 28110227 | 3L | 10884478..10884659 | 1339..1158 | 910 | 100 | Minus |
3L | 28110227 | 3L | 10885901..10885985 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:18:13 has no hits.
BO05705.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:52 Download gff for
BO05705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RA | 1..1326 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:22 Download gff for
BO05705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RA | 307..1634 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:13 Download gff for
BO05705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RB | 282..1599 | 22..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:52 Download gff for
BO05705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RA | 307..1634 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:57 Download gff for
BO05705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6404-RB | 282..1599 | 22..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:57 Download gff for
BO05705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10884476..10884659 | 1158..1341 | 98 | <- | Minus |
3L | 10884734..10885790 | 101..1157 | 100 | <- | Minus |
3L | 10885902..10885980 | 22..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:13 Download gff for
BO05705.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10879002..10879080 | 22..100 | 100 | | Minus |
arm_3L | 10877576..10877759 | 1158..1341 | 98 | <- | Minus |
arm_3L | 10877834..10878890 | 101..1157 | 100 | <- | Minus |
BO05705.pep Sequence
Translation from 16 to 1357
> BO05705.pep
MLAHRMQLWRTTNAAMAMTSAAGRFTPQASTGSRRDLYLQRITRGSSLPL
AAPEKWSNLGQLRFASGGATAAGVSATKGEEFMQAVPKTELVDLPDIPAA
PVPPPADGLNVMDVMNAAGEPSFASIGLGGWSPVGMVQNCLEFLHCTWDI
PWWGTIAIGTLAVRTIIFPLVILAQRNSAKMNNNMPQMQMLQLKMTEARQ
SGNAIESARYAQEMMLFMREKGVNPLKNMVVPLAQAPLFISFFMGLRQMA
NAPVESMRDGGLFWFTDLTMADPFYLLPLITSATLYLTIEIGTDSARLSA
ANMNTMKYVLRALPIVIFPFTMNFPAAILTYWACSNFISLGQVAVLRIPS
VREYFKIEKMLTHAPSALPPKKGFVGGMKESWDNMKISKEIEERQRLDEI
RFAKAGKGPLVKTYKFDPTKVAKPISAEPHMRLKEPPNKQGASFLDH
BO05705.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6404-PA | 441 | CG6404-PA | 1..441 | 1..441 | 2286 | 100 | Plus |
CG6404-PB | 441 | CG6404-PB | 1..441 | 1..441 | 2286 | 100 | Plus |
CG4942-PA | 351 | CG4942-PA | 62..320 | 128..362 | 205 | 26.5 | Plus |