Clone BO05705 Report

Search the DGRC for BO05705

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:57
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG6404-RA
Protein status:BO05705.pep: validated full length
Sequenced Size:1357

Clone Sequence Records

BO05705.3prime Sequence

894 bp (705 high quality bases) assembled on 2005-12-02

> BO05705.3prime
ATGGTCTAGAAAGCTTGCTCCCTGCTTGTTCGGCGGCTCCTTTAGCCGCA
TGTGCGGCTCCGCGGAAATGGGTTTTGCCACTTTCGTGGGATCGAACTTG
TACGTCTTGACCAGCGGACCCTTGCCGGCCTTGGCGAATCGGATCTCGTC
CAGGCGCTGTCGCTCCTCGATTTCTTTCGAGATCTTCATGTTGTCCCAGG
ACTCCTTCATTCCGCCGACGAATCCCTTCTTAGGTGGCAGTGCACTGGGC
GCATGGGTCAGCATCTTTTCGATCTTGAAGTACTCCCTCACGGAGGGAAT
CCTTAGCACCGCAACCTGCCCCAACGATATAAAGTTACTGCACGCCCAAT
AGGTCAAAATGGCAGCGGGGAAGTTCATCGTAAACGGGAAGATAACAATG
GGCAGGGCTCTGAGCACATATTTCATGGTGTTCATGTTGGCAGCCGATAA
GCGAGCCGAATCCGTTCCGATCTCAATGGTCAGGTACAACGTGGCACTGG
TGATTAAGGGCAGTAGATAGAAGGGATCCGCCATTGTGAGATCCGTGAAC
CAGAAGAGTCCGCCATCCCGCATTGATTCGACCGGCGCGTTAGCCATCTG
TCGCAGTCCCATGAAGAAGCTAATGAAGAGCGGTGCCTGGGCCAAGGGAA
CTACCATGTTCTTGAGCGGATTGACACCCTTCTCCCGCATGAACAGCATC
ATTTCCTGGGCATAACGAGCGGACTCAATGGCGTTTCCCGACTGCCTGGC
CTCGGTCATTTTCAGCTGCAGCATCTGCATCTGCGGCATATTGTTGTTCA
TCTTGGCAGAGTTCCTTTGGGCCAAGATGACCAATGGAAAGATTATGGTT
CGCACTGCGAGTGTTCCAATGGCGATGGTTCCCCACCAGGGAAT

BO05705.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6404-PB 1326 CG6404-RB 448..1323 894..19 4380 100 Minus
CG6404-PA 1326 CG6404-RA 448..1323 894..19 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6404-RA 1605 CG6404-RA 513..1388 894..19 4380 100 Minus
CG6404-RB 1815 CG6404-RB 724..1599 894..19 4380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10884734..10885427 201..894 3470 100 Plus
3L 28110227 3L 10884478..10884659 19..200 910 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:45:06 has no hits.

BO05705.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:07 Download gff for BO05705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-PB 448..1326 18..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:43 Download gff for BO05705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-PA 448..1326 18..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:04 Download gff for BO05705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-RB 724..1604 11..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:31 Download gff for BO05705.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-RB 724..1604 11..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:31 Download gff for BO05705.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10884473..10884659 11..200 97 <- Plus
3L 10884734..10885427 201..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:04 Download gff for BO05705.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10877573..10877759 11..200 97 <- Plus
arm_3L 10877834..10878527 201..894 100   Plus

BO05705.5prime Sequence

917 bp (849 high quality bases) assembled on 2005-11-29

> BO05705.5prime
GAAGTTATCAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAA
CAAACGCGGCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAG
GCATCCACGGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGG
CAGCAGTCTGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGC
TTCGTTTCGCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAA
GGCGAGGAGTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCC
GGACATACCCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAA
TGGATGTGATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTG
GGCGGCTGGTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCA
CTGCACGTGGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCG
CAGTGCGAACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCT
GCCAAGATGAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAAT
GACCGAGGCCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCC
AGGAAATGATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAAC
ATGGTAGTTCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGG
ACTGCGACAGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGAC
TCTTCTGGTTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCC
TTAATCACCAGTGCCACGTTGTACCTGACCATTGAGATCGGAACGGATTC
GGCTCGCTTATCGGCTG

BO05705.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6404-PB 1326 CG6404-RB 1..901 17..917 4505 100 Plus
CG6404-PA 1326 CG6404-RA 1..901 17..917 4505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6404-RA 1605 CG6404-RA 66..966 17..917 4505 100 Plus
CG6404-RB 1815 CG6404-RB 277..1177 17..917 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10884974..10885793 917..98 4100 100 Minus
3L 28110227 3L 10885901..10885985 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:45:17 has no hits.

BO05705.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:08 Download gff for BO05705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-PB 1..901 17..917 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:53:44 Download gff for BO05705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-PA 1..901 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:06 Download gff for BO05705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-RB 277..1177 17..917 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:24 Download gff for BO05705.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6404-RB 277..1177 17..917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:24 Download gff for BO05705.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10885902..10885985 17..100 100   Minus
3L 10884974..10885790 101..917 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:06 Download gff for BO05705.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10878074..10878890 101..917 100 <- Minus
arm_3L 10879002..10879085 17..100 100   Minus

BO05705.complete Sequence

1357 bp (1357 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630145

> BO05705.complete
GAAGTTATCAGTCGACATGTTGGCCCACAGGATGCAGCTTTGGAGGACAA
CAAACGCGGCAATGGCCATGACTTCCGCAGCCGGCCGTTTCACCCCACAG
GCATCCACGGGCAGCAGGAGAGATCTCTACCTCCAAAGGATTACCAGGGG
CAGCAGTCTGCCCTTAGCGGCCCCCGAAAAATGGTCCAATCTCGGCCAGC
TTCGTTTCGCCAGCGGTGGAGCAACTGCAGCGGGAGTTTCAGCCACCAAA
GGCGAGGAGTTCATGCAGGCTGTGCCGAAAACGGAACTAGTGGATCTGCC
GGACATACCCGCCGCTCCAGTGCCTCCACCCGCCGATGGTCTGAATGTAA
TGGATGTGATGAATGCCGCTGGCGAACCCTCCTTCGCCTCCATTGGCTTG
GGCGGCTGGTCTCCGGTGGGCATGGTACAGAACTGTTTGGAATTCTTGCA
CTGCACGTGGGATATTCCCTGGTGGGGAACCATCGCCATTGGAACACTCG
CAGTGCGAACCATAATCTTTCCATTGGTCATCTTGGCCCAAAGGAACTCT
GCCAAGATGAACAACAATATGCCGCAGATGCAGATGCTGCAGCTGAAAAT
GACCGAGGCCAGGCAGTCGGGAAACGCCATTGAGTCCGCTCGTTATGCCC
AGGAAATGATGCTGTTCATGCGGGAGAAGGGTGTCAATCCGCTCAAGAAC
ATGGTAGTTCCCTTGGCCCAGGCACCGCTCTTCATTAGCTTCTTCATGGG
ACTGCGACAGATGGCTAACGCGCCGGTCGAATCAATGCGGGATGGCGGAC
TCTTCTGGTTCACGGATCTCACAATGGCGGATCCCTTCTATCTACTGCCC
TTAATCACCAGTGCCACGTTGTACCTGACCATTGAGATCGGAACGGATTC
GGCTCGCTTATCGGCTGCCAACATGAACACCATGAAATATGTGCTCAGAG
CCCTGCCCATTGTTATCTTCCCGTTTACGATGAACTTCCCCGCTGCCATT
TTGACCTATTGGGCGTGCAGTAACTTTATATCGTTGGGGCAGGTTGCGGT
GCTAAGGATTCCCTCCGTGAGGGAGTACTTCAAGATCGAAAAGATGCTGA
CCCATGCGCCCAGTGCACTGCCACCTAAGAAGGGATTCGTCGGCGGAATG
AAGGAGTCCTGGGACAACATGAAGATCTCGAAAGAAATCGAGGAGCGACA
GCGCCTGGACGAGATCCGATTCGCCAAGGCCGGCAAGGGTCCGCTGGTCA
AGACGTACAAGTTCGATCCCACGAAAGTGGCAAAACCCATTTCCGCGGAG
CCGCACATGCGGCTAAAGGAGCCGCCGAACAAGCAGGGAGCAAGCTTTCT
AGACCAT

BO05705.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6404-RA 1326 CG6404-PA 1..1323 17..1339 6615 100 Plus
CG6404-RB 1326 CG6404-PB 1..1323 17..1339 6615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6404-RA 1605 CG6404-RA 66..1388 17..1339 6615 100 Plus
CG6404-RB 1815 CG6404-RB 277..1599 17..1339 6615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10884734..10885793 1157..98 5300 100 Minus
3L 28110227 3L 10884478..10884659 1339..1158 910 100 Minus
3L 28110227 3L 10885901..10885985 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:18:13 has no hits.

BO05705.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:52 Download gff for BO05705.complete
Subject Subject Range Query Range Percent Splice Strand
CG6404-RA 1..1326 17..1340 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:22 Download gff for BO05705.complete
Subject Subject Range Query Range Percent Splice Strand
CG6404-RA 307..1634 17..1347 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:13 Download gff for BO05705.complete
Subject Subject Range Query Range Percent Splice Strand
CG6404-RB 282..1599 22..1341 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:52 Download gff for BO05705.complete
Subject Subject Range Query Range Percent Splice Strand
CG6404-RA 307..1634 17..1347 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:57 Download gff for BO05705.complete
Subject Subject Range Query Range Percent Splice Strand
CG6404-RB 282..1599 22..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:57 Download gff for BO05705.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10884476..10884659 1158..1341 98 <- Minus
3L 10884734..10885790 101..1157 100 <- Minus
3L 10885902..10885980 22..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:13 Download gff for BO05705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10879002..10879080 22..100 100   Minus
arm_3L 10877576..10877759 1158..1341 98 <- Minus
arm_3L 10877834..10878890 101..1157 100 <- Minus

BO05705.pep Sequence

Translation from 16 to 1357

> BO05705.pep
MLAHRMQLWRTTNAAMAMTSAAGRFTPQASTGSRRDLYLQRITRGSSLPL
AAPEKWSNLGQLRFASGGATAAGVSATKGEEFMQAVPKTELVDLPDIPAA
PVPPPADGLNVMDVMNAAGEPSFASIGLGGWSPVGMVQNCLEFLHCTWDI
PWWGTIAIGTLAVRTIIFPLVILAQRNSAKMNNNMPQMQMLQLKMTEARQ
SGNAIESARYAQEMMLFMREKGVNPLKNMVVPLAQAPLFISFFMGLRQMA
NAPVESMRDGGLFWFTDLTMADPFYLLPLITSATLYLTIEIGTDSARLSA
ANMNTMKYVLRALPIVIFPFTMNFPAAILTYWACSNFISLGQVAVLRIPS
VREYFKIEKMLTHAPSALPPKKGFVGGMKESWDNMKISKEIEERQRLDEI
RFAKAGKGPLVKTYKFDPTKVAKPISAEPHMRLKEPPNKQGASFLDH

BO05705.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6404-PA 441 CG6404-PA 1..441 1..441 2286 100 Plus
CG6404-PB 441 CG6404-PB 1..441 1..441 2286 100 Plus
CG4942-PA 351 CG4942-PA 62..320 128..362 205 26.5 Plus