Clone BO05720 Report

Search the DGRC for BO05720

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:57
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptocn-RA
Protein status:BO05720.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO05720.5prime Sequence

476 bp (475 high quality bases) assembled on 2005-11-29

> BO05720.5prime
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGGCAAGCTTTCTAGACC

BO05720.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7929-PA 447 ocn-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 619 CG7929-RA 86..529 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30037435..30037645 227..17 1055 100 Minus
3R 32079331 3R 30037256..30037381 352..227 630 100 Minus
3R 32079331 3R 30037093..30037202 460..351 550 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:40:24 has no hits.

BO05720.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:31 Download gff for BO05720.5prime
Subject Subject Range Query Range Percent Splice Strand
ocn-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:17 Download gff for BO05720.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7929-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:49 Download gff for BO05720.5prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..539 17..469 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:27:00 Download gff for BO05720.5prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..539 17..469 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:27:00 Download gff for BO05720.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30037435..30037645 17..227 100   Minus
3R 30037082..30037200 353..469 96 <- Minus
3R 30037256..30037380 228..352 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:49 Download gff for BO05720.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25862804..25862922 353..469 96 <- Minus
arm_3R 25862978..25863102 228..352 100 <- Minus
arm_3R 25863157..25863367 17..227 100   Minus

BO05720.3prime Sequence

476 bp (475 high quality bases) assembled on 2005-12-02

> BO05720.3prime
ATGGTCTAGAAAGCTTGCCTGATACGCGTTCAGATTCTTTTTGGGCAAGA
TGATGTTGTAATGCTGGAATTTGGTCCAAGACAGCAGTATGTCCTTCGTC
CTGCCGTGCGGCGCCTCCCCAAAAGTCTTGCAGCACCCGTAAATTTTCAT
TACTTTCTTGTCCTCCTTGTTGCTGATGAACCCTCCACCCAGGCATTTGG
CGCAAATTCCAATTTTGTCCATCTCCTTTTGGATTTCCTCAAAGATTTCC
TCGTGGTCCTTGGAGGCGGATCCTCTTACAATGGTCCTGCCGAACCTAGT
TAAACCGTGCATGTGAATCATCATCAAAAGGTACTTGTTCTTGCCTTTAG
AAAGCTGAACTCTAGGAACATTTATCAAAAGGGCGTTTACGCGCGAAGAA
CTTTGCCTTCGAAGGGGCTTCAACAATTGTGAAACAGGTGCCAAAAGATT
CAAGGTTTTCATGTCGACTGATAACT

BO05720.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7929-PA 447 ocn-RA 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 619 CG7929-RA 86..529 462..19 2220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30037435..30037645 252..462 1055 100 Plus
3R 32079331 3R 30037256..30037381 127..252 630 100 Plus
3R 32079331 3R 30037093..30037202 19..128 550 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:40:17 has no hits.

BO05720.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:30 Download gff for BO05720.3prime
Subject Subject Range Query Range Percent Splice Strand
ocn-PA 1..447 16..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:15 Download gff for BO05720.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7929-PA 1..447 16..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:46 Download gff for BO05720.3prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..539 10..462 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:26:42 Download gff for BO05720.3prime
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..539 10..462 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:26:42 Download gff for BO05720.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30037082..30037200 10..126 96 <- Plus
3R 30037256..30037380 127..251 100 <- Plus
3R 30037435..30037645 252..462 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:46 Download gff for BO05720.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25862804..25862922 10..126 96 <- Plus
arm_3R 25862978..25863102 127..251 100 <- Plus
arm_3R 25863157..25863367 252..462 100   Plus

BO05720.complete Sequence

478 bp (478 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630146

> BO05720.complete
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGGCAAGCTTTCTAGACCAT

BO05720.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 447 CG7929-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-RA 619 CG7929-RA 86..529 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30037435..30037645 227..17 1055 100 Minus
3R 32079331 3R 30037256..30037381 352..227 630 100 Minus
3R 32079331 3R 30037093..30037202 460..351 550 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:38:33 has no hits.

BO05720.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:51 Download gff for BO05720.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:10 Download gff for BO05720.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..539 17..469 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:16 Download gff for BO05720.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..529 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:52 Download gff for BO05720.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..539 17..469 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:13 Download gff for BO05720.complete
Subject Subject Range Query Range Percent Splice Strand
ocn-RA 86..529 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:13 Download gff for BO05720.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30037090..30037200 353..462 98 <- Minus
3R 30037256..30037380 228..352 100 <- Minus
3R 30037435..30037645 17..227 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:16 Download gff for BO05720.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25862812..25862922 353..462 98 <- Minus
arm_3R 25862978..25863102 228..352 100 <- Minus
arm_3R 25863157..25863367 17..227 100   Minus

BO05720.pep Sequence

Translation from 16 to 478

> BO05720.pep
MKTLNLLAPVSQLLKPLRRQSSSRVNALLINVPRVQLSKGKNKYLLMMIH
MHGLTRFGRTIVRGSASKDHEEIFEEIQKEMDKIGICAKCLGGGFISNKE
DKKVMKIYGCCKTFGEAPHGRTKDILLSWTKFQHYNIILPKKNLNAYQAS
FLDH

BO05720.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
ocn-PA 148 CG7929-PA 1..148 1..148 773 100 Plus
janB-PA 140 CG7931-PA 1..136 1..137 306 43.1 Plus
CG18662-PA 146 CG18662-PA 8..128 7..126 187 28.9 Plus
janA-PB 135 CG7933-PB 1..128 4..137 161 33.8 Plus
janA-PA 119 CG7933-PA 6..112 29..137 158 36.9 Plus