Clone Sequence Records
BO05720.5prime Sequence
476 bp (475 high quality bases) assembled on 2005-11-29
> BO05720.5prime
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGGCAAGCTTTCTAGACC
BO05720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7929-PA | 447 | ocn-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 619 | CG7929-RA | 86..529 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30037435..30037645 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 30037256..30037381 | 352..227 | 630 | 100 | Minus |
3R | 32079331 | 3R | 30037093..30037202 | 460..351 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:40:24 has no hits.
BO05720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:31 Download gff for
BO05720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:17 Download gff for
BO05720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7929-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:49 Download gff for
BO05720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..539 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:27:00 Download gff for
BO05720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..539 | 17..469 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:27:00 Download gff for
BO05720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30037435..30037645 | 17..227 | 100 | | Minus |
3R | 30037082..30037200 | 353..469 | 96 | <- | Minus |
3R | 30037256..30037380 | 228..352 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:49 Download gff for
BO05720.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25862804..25862922 | 353..469 | 96 | <- | Minus |
arm_3R | 25862978..25863102 | 228..352 | 100 | <- | Minus |
arm_3R | 25863157..25863367 | 17..227 | 100 | | Minus |
BO05720.3prime Sequence
476 bp (475 high quality bases) assembled on 2005-12-02
> BO05720.3prime
ATGGTCTAGAAAGCTTGCCTGATACGCGTTCAGATTCTTTTTGGGCAAGA
TGATGTTGTAATGCTGGAATTTGGTCCAAGACAGCAGTATGTCCTTCGTC
CTGCCGTGCGGCGCCTCCCCAAAAGTCTTGCAGCACCCGTAAATTTTCAT
TACTTTCTTGTCCTCCTTGTTGCTGATGAACCCTCCACCCAGGCATTTGG
CGCAAATTCCAATTTTGTCCATCTCCTTTTGGATTTCCTCAAAGATTTCC
TCGTGGTCCTTGGAGGCGGATCCTCTTACAATGGTCCTGCCGAACCTAGT
TAAACCGTGCATGTGAATCATCATCAAAAGGTACTTGTTCTTGCCTTTAG
AAAGCTGAACTCTAGGAACATTTATCAAAAGGGCGTTTACGCGCGAAGAA
CTTTGCCTTCGAAGGGGCTTCAACAATTGTGAAACAGGTGCCAAAAGATT
CAAGGTTTTCATGTCGACTGATAACT
BO05720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7929-PA | 447 | ocn-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 619 | CG7929-RA | 86..529 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30037435..30037645 | 252..462 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 30037256..30037381 | 127..252 | 630 | 100 | Plus |
3R | 32079331 | 3R | 30037093..30037202 | 19..128 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:40:17 has no hits.
BO05720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:30 Download gff for
BO05720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-PA | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:15 Download gff for
BO05720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7929-PA | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:46 Download gff for
BO05720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..539 | 10..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:26:42 Download gff for
BO05720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..539 | 10..462 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:26:42 Download gff for
BO05720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30037082..30037200 | 10..126 | 96 | <- | Plus |
3R | 30037256..30037380 | 127..251 | 100 | <- | Plus |
3R | 30037435..30037645 | 252..462 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:46 Download gff for
BO05720.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25862804..25862922 | 10..126 | 96 | <- | Plus |
arm_3R | 25862978..25863102 | 127..251 | 100 | <- | Plus |
arm_3R | 25863157..25863367 | 252..462 | 100 | | Plus |
BO05720.complete Sequence
478 bp (478 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630146
> BO05720.complete
GAAGTTATCAGTCGACATGAAAACCTTGAATCTTTTGGCACCTGTTTCAC
AATTGTTGAAGCCCCTTCGAAGGCAAAGTTCTTCGCGCGTAAACGCCCTT
TTGATAAATGTTCCTAGAGTTCAGCTTTCTAAAGGCAAGAACAAGTACCT
TTTGATGATGATTCACATGCACGGTTTAACTAGGTTCGGCAGGACCATTG
TAAGAGGATCCGCCTCCAAGGACCACGAGGAAATCTTTGAGGAAATCCAA
AAGGAGATGGACAAAATTGGAATTTGCGCCAAATGCCTGGGTGGAGGGTT
CATCAGCAACAAGGAGGACAAGAAAGTAATGAAAATTTACGGGTGCTGCA
AGACTTTTGGGGAGGCGCCGCACGGCAGGACGAAGGACATACTGCTGTCT
TGGACCAAATTCCAGCATTACAACATCATCTTGCCCAAAAAGAATCTGAA
CGCGTATCAGGCAAGCTTTCTAGACCAT
BO05720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 447 | CG7929-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-RA | 619 | CG7929-RA | 86..529 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30037435..30037645 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 30037256..30037381 | 352..227 | 630 | 100 | Minus |
3R | 32079331 | 3R | 30037093..30037202 | 460..351 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:38:33 has no hits.
BO05720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:51 Download gff for
BO05720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:10 Download gff for
BO05720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..539 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:16 Download gff for
BO05720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..529 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:52 Download gff for
BO05720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..539 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:13 Download gff for
BO05720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ocn-RA | 86..529 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:13 Download gff for
BO05720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30037090..30037200 | 353..462 | 98 | <- | Minus |
3R | 30037256..30037380 | 228..352 | 100 | <- | Minus |
3R | 30037435..30037645 | 17..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:16 Download gff for
BO05720.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25862812..25862922 | 353..462 | 98 | <- | Minus |
arm_3R | 25862978..25863102 | 228..352 | 100 | <- | Minus |
arm_3R | 25863157..25863367 | 17..227 | 100 | | Minus |
BO05720.pep Sequence
Translation from 16 to 478
> BO05720.pep
MKTLNLLAPVSQLLKPLRRQSSSRVNALLINVPRVQLSKGKNKYLLMMIH
MHGLTRFGRTIVRGSASKDHEEIFEEIQKEMDKIGICAKCLGGGFISNKE
DKKVMKIYGCCKTFGEAPHGRTKDILLSWTKFQHYNIILPKKNLNAYQAS
FLDH
BO05720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ocn-PA | 148 | CG7929-PA | 1..148 | 1..148 | 773 | 100 | Plus |
janB-PA | 140 | CG7931-PA | 1..136 | 1..137 | 306 | 43.1 | Plus |
CG18662-PA | 146 | CG18662-PA | 8..128 | 7..126 | 187 | 28.9 | Plus |
janA-PB | 135 | CG7933-PB | 1..128 | 4..137 | 161 | 33.8 | Plus |
janA-PA | 119 | CG7933-PA | 6..112 | 29..137 | 158 | 36.9 | Plus |