Clone Sequence Records
BO05722.3prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-02
> BO05722.3prime
ATGGTCTAGAAAGCTTGCTTGTTGTGCCGCGGTCAAGGCCAAAACGGTGA
AGCGCACTTCGTTGGGATCGCGAGCCATGAACTCCTTGCAGACCTTGGCC
GCATCCTTCACAAAAGTCTCCTCCGAAGTCGGTCCGTGCTTGATCGGGAA
GGACTTGCGGCCATCCAGCTCGTACAGAGTACCCTCCTTGTTCACCAGTG
CGATGAAGTGGTGGATCACCTTCTCATGATTGGCGGCATTCGTCTGGCCC
TCTTGAGCCAAGGCCTCATGATCGGCGGTGAACTTCTCGTCTTTTTCGAG
GGCCCGTCCGCGTTCCTCCGGGGACAAGGAAGCTGTCTTCTCCAGGAAGT
CCTTCAGTACTCCGCGGTCAATGTCCACTTCTTTGTTGTTGGCCACGCTG
TGGATCAGGGCGACGGTTCCACAGGCGTTGTGGGTGAACTGGCGCATGTA
GAAGAGATCCTCGGGATGCTGCTCCTCCACCTCCTTAATCCGATCGTGCT
CCTCGGCGCGGTGCTTCTCATAGGTTTCGCTGCACGGGAAGAGCAAAATG
AACGCCTTTACGGGACGCGGAATCCATTCCAAGGTGTCATCTTCCAATCC
AATGACGTCAGTTACCGACCAGGCTGGCGACACGCCCAGTTTATGTATGT
ACTTGGTCAAAACCTCGGGATTAGATTCAAGTGGCGTCCAGGTTAACATG
TCGACTGATAACT
BO05722.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4265-PA | 684 | Uch-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..809 | 699..19 | 3405 | 100 | Minus |
Uch-RA | 1196 | CG4265-RA | 281..961 | 699..19 | 3405 | 100 | Minus |
Uch-RC | 1035 | CG4265-RC | 129..800 | 699..19 | 3260 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212973..2213333 | 19..379 | 1805 | 100 | Plus |
2L | 23513712 | 2L | 2213415..2213557 | 380..522 | 715 | 100 | Plus |
2L | 23513712 | 2L | 2213616..2213758 | 523..665 | 715 | 100 | Plus |
2L | 23513712 | 2L | 2213894..2213931 | 662..699 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:45:39 has no hits.
BO05722.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:34 Download gff for
BO05722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-PA | 1..684 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:21 Download gff for
BO05722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4265-PA | 1..684 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:10 Download gff for
BO05722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 19..699 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:11 Download gff for
BO05722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 19..699 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:11 Download gff for
BO05722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2212973..2213333 | 19..379 | 100 | <- | Plus |
2L | 2213415..2213557 | 380..522 | 100 | <- | Plus |
2L | 2213616..2213756 | 523..663 | 100 | <- | Plus |
2L | 2213896..2213931 | 664..699 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:10 Download gff for
BO05722.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2212973..2213333 | 19..379 | 100 | <- | Plus |
arm_2L | 2213415..2213557 | 380..522 | 100 | <- | Plus |
arm_2L | 2213616..2213756 | 523..663 | 100 | <- | Plus |
arm_2L | 2213896..2213931 | 664..699 | 100 | | Plus |
BO05722.5prime Sequence
713 bp (712 high quality bases) assembled on 2005-11-29
> BO05722.5prime
GAAGTTATCAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCG
AGGTTTTGACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCG
GTAACTGACGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCG
TCCCGTAAAGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGA
AGCACCGCGCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCAT
CCCGAGGATCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAAC
CGTCGCCCTGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACC
GCGGAGTACTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAG
GAACGCGGACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGA
GGCCTTGGCTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGA
TCCACCACTTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTG
GATGGCCGCAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGAC
TTTTGTGAAGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATC
CCAACGAAGTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAAGCA
AGCTTTCTAGACC
BO05722.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4265-PA | 684 | Uch-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..809 | 17..697 | 3405 | 100 | Plus |
Uch-RA | 1196 | CG4265-RA | 281..961 | 17..697 | 3405 | 100 | Plus |
Uch-RC | 1035 | CG4265-RC | 129..800 | 17..697 | 3260 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212973..2213333 | 697..337 | 1805 | 100 | Minus |
2L | 23513712 | 2L | 2213415..2213557 | 336..194 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213616..2213758 | 193..51 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213894..2213931 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:45:49 has no hits.
BO05722.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:35 Download gff for
BO05722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-PA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:22 Download gff for
BO05722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4265-PA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:12 Download gff for
BO05722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:48 Download gff for
BO05722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 281..961 | 17..697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:48 Download gff for
BO05722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2212973..2213333 | 337..697 | 100 | <- | Minus |
2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
2L | 2213896..2213931 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:12 Download gff for
BO05722.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
arm_2L | 2213896..2213931 | 17..52 | 100 | | Minus |
arm_2L | 2212973..2213333 | 337..697 | 100 | <- | Minus |
arm_2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
BO05722.complete Sequence
715 bp (715 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630147
> BO05722.complete
GAAGTTATCAGTCGACATGTTAACCTGGACGCCACTTGAATCTAATCCCG
AGGTTTTGACCAAGTACATACATAAACTGGGCGTGTCGCCAGCCTGGTCG
GTAACTGACGTCATTGGATTGGAAGATGACACCTTGGAATGGATTCCGCG
TCCCGTAAAGGCGTTCATTTTGCTCTTCCCGTGCAGCGAAACCTATGAGA
AGCACCGCGCCGAGGAGCACGATCGGATTAAGGAGGTGGAGGAGCAGCAT
CCCGAGGATCTCTTCTACATGCGCCAGTTCACCCACAACGCCTGTGGAAC
CGTCGCCCTGATCCACAGCGTGGCCAACAACAAAGAAGTGGACATTGACC
GCGGAGTACTGAAGGACTTCCTGGAGAAGACAGCTTCCTTGTCCCCGGAG
GAACGCGGACGGGCCCTCGAAAAAGACGAGAAGTTCACCGCCGATCATGA
GGCCTTGGCTCAAGAGGGCCAGACGAATGCCGCCAATCATGAGAAGGTGA
TCCACCACTTCATCGCACTGGTGAACAAGGAGGGTACTCTGTACGAGCTG
GATGGCCGCAAGTCCTTCCCGATCAAGCACGGACCGACTTCGGAGGAGAC
TTTTGTGAAGGATGCGGCCAAGGTCTGCAAGGAGTTCATGGCTCGCGATC
CCAACGAAGTGCGCTTCACCGTTTTGGCCTTGACCGCGGCACAACAAGCA
AGCTTTCTAGACCAT
BO05722.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 684 | CG4265-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
Uch-RA | 684 | CG4265-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
Uch-RC | 675 | CG4265-PC | 1..672 | 17..697 | 3235 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-RB | 1044 | CG4265-RB | 129..809 | 17..697 | 3405 | 100 | Plus |
Uch-RA | 1196 | CG4265-RA | 281..961 | 17..697 | 3405 | 100 | Plus |
Uch-RC | 1035 | CG4265-RC | 129..800 | 17..697 | 3235 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2212973..2213333 | 697..337 | 1805 | 100 | Minus |
2L | 23513712 | 2L | 2213415..2213557 | 336..194 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213616..2213758 | 193..51 | 715 | 100 | Minus |
2L | 23513712 | 2L | 2213894..2213931 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:18 has no hits.
BO05722.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:35 Download gff for
BO05722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:18 Download gff for
BO05722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 249..929 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:25 Download gff for
BO05722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 286..961 | 22..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:35 Download gff for
BO05722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 249..929 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:37 Download gff for
BO05722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Uch-RA | 286..961 | 22..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:37 Download gff for
BO05722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2212971..2213333 | 337..699 | 99 | <- | Minus |
2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
2L | 2213896..2213926 | 22..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:25 Download gff for
BO05722.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2213415..2213557 | 194..336 | 100 | <- | Minus |
arm_2L | 2213616..2213756 | 53..193 | 100 | <- | Minus |
arm_2L | 2213896..2213926 | 22..52 | 100 | | Minus |
arm_2L | 2212971..2213333 | 337..699 | 99 | <- | Minus |
BO05722.pep Sequence
Translation from 16 to 715
> BO05722.pep
MLTWTPLESNPEVLTKYIHKLGVSPAWSVTDVIGLEDDTLEWIPRPVKAF
ILLFPCSETYEKHRAEEHDRIKEVEEQHPEDLFYMRQFTHNACGTVALIH
SVANNKEVDIDRGVLKDFLEKTASLSPEERGRALEKDEKFTADHEALAQE
GQTNAANHEKVIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETFVKDA
AKVCKEFMARDPNEVRFTVLALTAAQQASFLDH
BO05722.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Uch-PB | 227 | CG4265-PB | 1..227 | 1..227 | 1194 | 100 | Plus |
Uch-PA | 227 | CG4265-PA | 1..227 | 1..227 | 1194 | 100 | Plus |
Uch-PC | 224 | CG4265-PC | 1..224 | 1..227 | 1163 | 98.7 | Plus |
Uch-L5-PB | 324 | CG3431-PB | 8..227 | 4..227 | 182 | 26.4 | Plus |
Uch-L5-PA | 324 | CG3431-PA | 8..227 | 4..227 | 182 | 26.4 | Plus |