Clone BO05734 Report

Search the DGRC for BO05734

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:57
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptobst-B-RA
Protein status:BO05734.pep: Imported from assembly
Sequenced Size:1045

Clone Sequence Records

BO05734.3prime Sequence

839 bp (721 high quality bases) assembled on 2005-12-02

> BO05734.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCTCCTCCTCCTCCTCCTCCTTAACCT
GCTCCGGTTCCACTCGCTTCGGCTGGGGCTTGCGCCTCGACTGACCGCGG
ACACGTGGCGGCCTCTTGGTGGTCGTGGTCTTGGGCTTCGGGTTCTCCAG
CTCATCCAGCTCCTTGTCGGTCAGACGATCCTTGTACCAGTCGGCACAAT
CTGGCACCTTGCGTGCCCAGTCGCAGGTCTCCTTCTCCTCGTCGAAGACC
TGGCCCAGTTTGCATCCGTTTCGCCTGGGCAGATCTCCGTTGACGCAGAC
GTAGAAGAACTGGCAATCGTTGGGATCGGCGTAGCGGGGATGTGTCACTG
CGATGCTCTCGTTCACCTTGGGGCACTCAAAGTCGAAGACATCCTCCGAC
TTGCAGCCAGTGACGCCCACTTGGTCAGGCCAGCCACATATGCCCGTCTT
GGGATTGAAGACCAGTCCAGCCGGGCAGGTAATCATATTGAACTGACCAT
CCACGCAAAAGTAGAACTTATCGCAGATGCCTGGCTTCTCGTGGCCAAAG
TATCCATTCTTCCGGGGACAGTGAAGCGATGGCTGAGGTGTTTGTAGCTT
GCTCCGCTTCATGCAGTCAATGTTGTAGGGCAGATCGCACTTCTCCTCGA
TGGGTGAGTAGTCATTGAAGACCATGCCATCGGCGCACAGTCGCTCCGTG
GGCACACCATCCAGGCAGGCGTAGTACTTGTCGCACTGCTTGCTGTCCGG
ATAGAAGCCATTTGGGCTCCGGGCACTCCTCGGTGGGCTCGTACTCCTTC
TCCGCCGCCGTCTGTTTGCTCTTTGGCACCCACCGATGC

BO05734.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4778-PA 1014 CG4778-RA 268..1011 762..19 3720 100 Minus
CG4778-PA 1014 CG4778-RA 201..269 830..762 345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-RA 1149 CG4778-RA 247..1065 839..19 4055 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10038218..10038614 593..197 1985 100 Minus
2L 23513712 2L 10038692..10038870 197..19 895 100 Minus
2L 23513712 2L 10037161..10037279 712..594 595 100 Minus
2L 23513712 2L 10036957..10037074 830..712 545 99.2 Minus
Blast to na_te.dros performed 2015-02-13 00:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 819..911 317..222 130 65.3 Minus

BO05734.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:57 Download gff for BO05734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4778-PA 193..1014 18..839 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:52 Download gff for BO05734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4778-PA 193..1014 18..839 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:12:17 Download gff for BO05734.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 247..1070 13..839 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:45 Download gff for BO05734.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 247..1070 13..839 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:45 Download gff for BO05734.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10036949..10037073 713..839 98 -> Minus
2L 10037161..10037279 594..712 100 -> Minus
2L 10038218..10038614 197..593 100 -> Minus
2L 10038693..10038875 13..196 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:12:17 Download gff for BO05734.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10036949..10037073 713..839 98 -> Minus
arm_2L 10037161..10037279 594..712 100 -> Minus
arm_2L 10038218..10038614 197..593 100 -> Minus
arm_2L 10038693..10038875 13..196 98   Minus

BO05734.5prime Sequence

913 bp (729 high quality bases) assembled on 2005-09-13

> BO05734.5prime
CAGTCGACATGTCGGCCAACGAAATGGCGCTTGTGAAAATCTGCATATTT
GCTTTGGCTTTGGCCGTGGGTCTGACCGCAACCAAGGCGCAGGAGTCGAG
AGGCGGTTTCCGTGGCAGTAACAGCCAGTTTCGCGTGGGTCCTGGCCATC
CGCCCTCGCAGCGCCACCTGCCGCCCCGAAACCGTGATCCCGTCCAGGAG
GCATCGGTGGTGCCAAAGAGCAAACAGACGGCGGCGGAGAAGGAGTACGA
GCCCACCGAGGAGTGCCCGGAGCCCAATGGCTTCTATCCGGACAGCAAGC
AGTGCGACAAGTACTACGCCTGCCTGGATGGTGTGCCCACGGAGCGACTG
TGCGCCGATGGCATGGTCTTCAATGACTACTCACCCATCGAGGAGAAGTG
CGATCTGCCCTACAACATTGACTGCATGAAGCGGAGCAAGCTACAAACAC
CTCAGCCATCGCTTCACTGTCCCCGGAAGAATGGATACTTTGGCCACGAG
AAGCCAGGCATCTGCGATAAGTTCTACTTTTGCGTGGATGGTCAGTTCAA
TATGATTACCTGCCCGGCTGGACTGGTCTTCAATCCCAAGACGGGCATAT
GTGGCTGGCCTGACCAAGTGGGCGTCACTGGCTGCAAGTCGGAGGATGTC
TTCGACTTTGAGTGCCCCAAGGTGAACGAGAGCATCGCAGTGACACATCC
CCGCTACGCCGATCCCAACGATTGCCAGTTCTTCTACGTCTGCGTCAACG
GAGATCTGCCCAGGCGAAACGGATGCAAACTGGGCCAGGTCTTCGACGAG
GAGAAGGAGACCTGCGACTGGGCACGCAAGGTGCCAGATTGTGCCGACTG
GTACAAGGATCGTCTGACCGACAAGGAACTGGATGAGCTGGAAAAACCCC
AAGCCCAAAACCA

BO05734.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4778-PA 1014 CG4778-RA 1..884 9..892 4370 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-RA 1149 CG4778-RA 55..958 9..913 4425 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10038218..10038614 445..841 1985 100 Plus
2L 23513712 2L 10036817..10037074 69..326 1290 100 Plus
2L 23513712 2L 10037161..10037279 326..444 595 100 Plus
2L 23513712 2L 10032893..10032955 9..71 300 98.4 Plus
2L 23513712 2L 10038692..10038763 841..913 255 93.2 Plus
Blast to na_te.dros performed 2015-02-13 00:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 819..911 721..816 130 65.3 Plus

BO05734.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:58 Download gff for BO05734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4778-PA 1..903 9..912 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:54 Download gff for BO05734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4778-PA 1..903 9..912 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:12:18 Download gff for BO05734.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 51..957 3..912 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:24 Download gff for BO05734.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 51..957 3..912 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:24 Download gff for BO05734.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10032889..10032953 3..69 92 -> Plus
2L 10036818..10037073 70..325 100 -> Plus
2L 10037161..10037279 326..444 100 -> Plus
2L 10038218..10038614 445..841 100 -> Plus
2L 10038693..10038752 842..903 91 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:12:18 Download gff for BO05734.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10032889..10032953 3..69 92 -> Plus
arm_2L 10037161..10037279 326..444 100 -> Plus
arm_2L 10036818..10037073 70..325 100 -> Plus
arm_2L 10038218..10038614 445..841 100 -> Plus
arm_2L 10038693..10038752 842..903 91 -> Plus

BO05734.complete Sequence

1045 bp assembled on 2008-08-14

GenBank Submission: FJ630148

> BO05734.complete
GAAGTTATCAGTCGACATGTCGGCCAACGAAATGGCGCTTGTGAAAATCT
GCATATTTGCTTTGGCTTTGGCCGTGGGTCTGACCGCAACCAAGGCGCAG
GAGTCGAGAGGCGGTTTCCGTGGCAGTAACAGCCAGTTTCGCGTGGGTCC
TGGCCATCCGCCCTCGCAGCGCCACCTGCCGCCCCGAAACCGTGATCCCG
TCCAGGAGGCATCGGTGGTGCCAAAGAGCAAACAGACGGCGGCGGAGAAG
GAGTACGAGCCCACCGAGGAGTGCCCGGAGCCCAATGGCTTCTATCCGGA
CAGCAAGCAGTGCGACAAGTACTACGCCTGCCTGGATGGTGTGCCCACGG
AGCGACTGTGCGCCGATGGCATGGTCTTCAATGACTACTCACCCATCGAG
GAGAAGTGCGATCTGCCCTACAACATTGACTGCATGAAGCGGAGCAAGCT
ACAAACACCTCAGCCATCGCTTCACTGTCCCCGGAAGAATGGATACTTTG
GCCACGAGAAGCCAGGCATCTGCGATAAGTTCTACTTTTGCGTGGATGGT
CAGTTCAATATGATTACCTGCCCGGCTGGACTGGTCTTCAATCCCAAGAC
GGGCATATGTGGCTGGCCTGACCAAGTGGGCGTCACTGGCTGCAAGTCGG
AGGATGTCTTCGACTTTGAGTGCCCCAAGGTGAACGAGAGCATCGCAGTG
ACACATCCCCGCTACGCCGATCCCAACGATTGCCAGTTCTTCTACGTCTG
CGTCAACGGAGATCTGCCCAGGCGAAACGGATGCAAACTGGGCCAGGTCT
TCGACGAGGAGAAGGAGACCTGCGACTGGGCACGCAAGGTGCCAGATTGT
GCCGACTGGTACAAGGATCGTCTGACCGACAAGGAGCTGGATGAGCTGGA
GAACCCGAAGCCCAAGACCACGACCACCAAGAGGCCGCCACGTGTCCGCG
GTCAGTCGAGGCGCAAGCCCCAGCCGAAGCGAGTGGAACCGGAGCAGGTT
AAGGAGGAGGAGGAGGAGGAGGAGGAGGCAAGCTTTCTAGACCAT

BO05734.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-RA 1014 CG4778-PA 1..1011 17..1027 5040 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-RA 1149 CG4778-RA 55..1065 17..1027 5040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10038218..10038614 453..849 1985 100 Plus
2L 23513712 2L 10036817..10037074 77..334 1290 100 Plus
2L 23513712 2L 10038692..10038870 849..1027 895 100 Plus
2L 23513712 2L 10037161..10037279 334..452 595 100 Plus
2L 23513712 2L 10032893..10032955 17..79 300 98.4 Plus
Blast to na_te.dros performed 2014-11-28 00:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 819..911 729..824 130 65.3 Plus

BO05734.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:01 Download gff for BO05734.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 47..1066 11..1033 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:18 Download gff for BO05734.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 55..1065 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:55 Download gff for BO05734.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 51..1061 17..1029 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:50 Download gff for BO05734.complete
Subject Subject Range Query Range Percent Splice Strand
obst-B-RA 55..1065 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:50 Download gff for BO05734.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10032893..10032953 17..77 98 -> Plus
2L 10036818..10037073 78..333 100 -> Plus
2L 10037161..10037279 334..452 100 -> Plus
2L 10038218..10038614 453..849 100 -> Plus
2L 10038693..10038870 850..1029 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:18 Download gff for BO05734.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10032893..10032953 17..77 98 -> Plus
arm_2L 10036818..10037073 78..333 100 -> Plus
arm_2L 10037161..10037279 334..452 100 -> Plus
arm_2L 10038218..10038614 453..849 100 -> Plus
arm_2L 10038693..10038870 850..1029 98   Plus

BO05734.pep Sequence

Translation from 16 to 1045

> BO05734.pep
MSANEMALVKICIFALALAVGLTATKAQESRGGFRGSNSQFRVGPGHPPS
QRHLPPRNRDPVQEASVVPKSKQTAAEKEYEPTEECPEPNGFYPDSKQCD
KYYACLDGVPTERLCADGMVFNDYSPIEEKCDLPYNIDCMKRSKLQTPQP
SLHCPRKNGYFGHEKPGICDKFYFCVDGQFNMITCPAGLVFNPKTGICGW
PDQVGVTGCKSEDVFDFECPKVNESIAVTHPRYADPNDCQFFYVCVNGDL
PRRNGCKLGQVFDEEKETCDWARKVPDCADWYKDRLTDKELDELENPKPK
TTTTKRPPRVRGQSRRKPQPKRVEPEQVKEEEEEEEEASFLDH

BO05734.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
obst-B-PA 337 CG4778-PA 1..337 1..337 1879 100 Plus
obst-A-PB 237 CG17052-PB 24..231 85..284 548 46.6 Plus
obst-A-PA 237 CG17052-PA 24..231 85..284 548 46.6 Plus
Gasp-PB 235 CG10287-PB 22..224 85..284 351 36.1 Plus
Gasp-PA 258 CG10287-PA 22..224 85..284 351 36.1 Plus