Clone Sequence Records
BO05734.3prime Sequence
839 bp (721 high quality bases) assembled on 2005-12-02
> BO05734.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCTCCTCCTCCTCCTCCTCCTTAACCT
GCTCCGGTTCCACTCGCTTCGGCTGGGGCTTGCGCCTCGACTGACCGCGG
ACACGTGGCGGCCTCTTGGTGGTCGTGGTCTTGGGCTTCGGGTTCTCCAG
CTCATCCAGCTCCTTGTCGGTCAGACGATCCTTGTACCAGTCGGCACAAT
CTGGCACCTTGCGTGCCCAGTCGCAGGTCTCCTTCTCCTCGTCGAAGACC
TGGCCCAGTTTGCATCCGTTTCGCCTGGGCAGATCTCCGTTGACGCAGAC
GTAGAAGAACTGGCAATCGTTGGGATCGGCGTAGCGGGGATGTGTCACTG
CGATGCTCTCGTTCACCTTGGGGCACTCAAAGTCGAAGACATCCTCCGAC
TTGCAGCCAGTGACGCCCACTTGGTCAGGCCAGCCACATATGCCCGTCTT
GGGATTGAAGACCAGTCCAGCCGGGCAGGTAATCATATTGAACTGACCAT
CCACGCAAAAGTAGAACTTATCGCAGATGCCTGGCTTCTCGTGGCCAAAG
TATCCATTCTTCCGGGGACAGTGAAGCGATGGCTGAGGTGTTTGTAGCTT
GCTCCGCTTCATGCAGTCAATGTTGTAGGGCAGATCGCACTTCTCCTCGA
TGGGTGAGTAGTCATTGAAGACCATGCCATCGGCGCACAGTCGCTCCGTG
GGCACACCATCCAGGCAGGCGTAGTACTTGTCGCACTGCTTGCTGTCCGG
ATAGAAGCCATTTGGGCTCCGGGCACTCCTCGGTGGGCTCGTACTCCTTC
TCCGCCGCCGTCTGTTTGCTCTTTGGCACCCACCGATGC
BO05734.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4778-PA | 1014 | CG4778-RA | 268..1011 | 762..19 | 3720 | 100 | Minus |
CG4778-PA | 1014 | CG4778-RA | 201..269 | 830..762 | 345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-B-RA | 1149 | CG4778-RA | 247..1065 | 839..19 | 4055 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10038218..10038614 | 593..197 | 1985 | 100 | Minus |
2L | 23513712 | 2L | 10038692..10038870 | 197..19 | 895 | 100 | Minus |
2L | 23513712 | 2L | 10037161..10037279 | 712..594 | 595 | 100 | Minus |
2L | 23513712 | 2L | 10036957..10037074 | 830..712 | 545 | 99.2 | Minus |
Blast to na_te.dros performed 2015-02-13 00:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 819..911 | 317..222 | 130 | 65.3 | Minus |
BO05734.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:57 Download gff for
BO05734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4778-PA | 193..1014 | 18..839 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:52 Download gff for
BO05734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4778-PA | 193..1014 | 18..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:12:17 Download gff for
BO05734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 247..1070 | 13..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:45 Download gff for
BO05734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 247..1070 | 13..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:45 Download gff for
BO05734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10036949..10037073 | 713..839 | 98 | -> | Minus |
2L | 10037161..10037279 | 594..712 | 100 | -> | Minus |
2L | 10038218..10038614 | 197..593 | 100 | -> | Minus |
2L | 10038693..10038875 | 13..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:12:17 Download gff for
BO05734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10036949..10037073 | 713..839 | 98 | -> | Minus |
arm_2L | 10037161..10037279 | 594..712 | 100 | -> | Minus |
arm_2L | 10038218..10038614 | 197..593 | 100 | -> | Minus |
arm_2L | 10038693..10038875 | 13..196 | 98 | | Minus |
BO05734.5prime Sequence
913 bp (729 high quality bases) assembled on 2005-09-13
> BO05734.5prime
CAGTCGACATGTCGGCCAACGAAATGGCGCTTGTGAAAATCTGCATATTT
GCTTTGGCTTTGGCCGTGGGTCTGACCGCAACCAAGGCGCAGGAGTCGAG
AGGCGGTTTCCGTGGCAGTAACAGCCAGTTTCGCGTGGGTCCTGGCCATC
CGCCCTCGCAGCGCCACCTGCCGCCCCGAAACCGTGATCCCGTCCAGGAG
GCATCGGTGGTGCCAAAGAGCAAACAGACGGCGGCGGAGAAGGAGTACGA
GCCCACCGAGGAGTGCCCGGAGCCCAATGGCTTCTATCCGGACAGCAAGC
AGTGCGACAAGTACTACGCCTGCCTGGATGGTGTGCCCACGGAGCGACTG
TGCGCCGATGGCATGGTCTTCAATGACTACTCACCCATCGAGGAGAAGTG
CGATCTGCCCTACAACATTGACTGCATGAAGCGGAGCAAGCTACAAACAC
CTCAGCCATCGCTTCACTGTCCCCGGAAGAATGGATACTTTGGCCACGAG
AAGCCAGGCATCTGCGATAAGTTCTACTTTTGCGTGGATGGTCAGTTCAA
TATGATTACCTGCCCGGCTGGACTGGTCTTCAATCCCAAGACGGGCATAT
GTGGCTGGCCTGACCAAGTGGGCGTCACTGGCTGCAAGTCGGAGGATGTC
TTCGACTTTGAGTGCCCCAAGGTGAACGAGAGCATCGCAGTGACACATCC
CCGCTACGCCGATCCCAACGATTGCCAGTTCTTCTACGTCTGCGTCAACG
GAGATCTGCCCAGGCGAAACGGATGCAAACTGGGCCAGGTCTTCGACGAG
GAGAAGGAGACCTGCGACTGGGCACGCAAGGTGCCAGATTGTGCCGACTG
GTACAAGGATCGTCTGACCGACAAGGAACTGGATGAGCTGGAAAAACCCC
AAGCCCAAAACCA
BO05734.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4778-PA | 1014 | CG4778-RA | 1..884 | 9..892 | 4370 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-B-RA | 1149 | CG4778-RA | 55..958 | 9..913 | 4425 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10038218..10038614 | 445..841 | 1985 | 100 | Plus |
2L | 23513712 | 2L | 10036817..10037074 | 69..326 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 10037161..10037279 | 326..444 | 595 | 100 | Plus |
2L | 23513712 | 2L | 10032893..10032955 | 9..71 | 300 | 98.4 | Plus |
2L | 23513712 | 2L | 10038692..10038763 | 841..913 | 255 | 93.2 | Plus |
Blast to na_te.dros performed 2015-02-13 00:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 819..911 | 721..816 | 130 | 65.3 | Plus |
BO05734.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:29:58 Download gff for
BO05734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4778-PA | 1..903 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:54:54 Download gff for
BO05734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4778-PA | 1..903 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:12:18 Download gff for
BO05734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 51..957 | 3..912 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:24 Download gff for
BO05734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 51..957 | 3..912 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:24 Download gff for
BO05734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10032889..10032953 | 3..69 | 92 | -> | Plus |
2L | 10036818..10037073 | 70..325 | 100 | -> | Plus |
2L | 10037161..10037279 | 326..444 | 100 | -> | Plus |
2L | 10038218..10038614 | 445..841 | 100 | -> | Plus |
2L | 10038693..10038752 | 842..903 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:12:18 Download gff for
BO05734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10032889..10032953 | 3..69 | 92 | -> | Plus |
arm_2L | 10037161..10037279 | 326..444 | 100 | -> | Plus |
arm_2L | 10036818..10037073 | 70..325 | 100 | -> | Plus |
arm_2L | 10038218..10038614 | 445..841 | 100 | -> | Plus |
arm_2L | 10038693..10038752 | 842..903 | 91 | -> | Plus |
BO05734.complete Sequence
1045 bp assembled on 2008-08-14
GenBank Submission: FJ630148
> BO05734.complete
GAAGTTATCAGTCGACATGTCGGCCAACGAAATGGCGCTTGTGAAAATCT
GCATATTTGCTTTGGCTTTGGCCGTGGGTCTGACCGCAACCAAGGCGCAG
GAGTCGAGAGGCGGTTTCCGTGGCAGTAACAGCCAGTTTCGCGTGGGTCC
TGGCCATCCGCCCTCGCAGCGCCACCTGCCGCCCCGAAACCGTGATCCCG
TCCAGGAGGCATCGGTGGTGCCAAAGAGCAAACAGACGGCGGCGGAGAAG
GAGTACGAGCCCACCGAGGAGTGCCCGGAGCCCAATGGCTTCTATCCGGA
CAGCAAGCAGTGCGACAAGTACTACGCCTGCCTGGATGGTGTGCCCACGG
AGCGACTGTGCGCCGATGGCATGGTCTTCAATGACTACTCACCCATCGAG
GAGAAGTGCGATCTGCCCTACAACATTGACTGCATGAAGCGGAGCAAGCT
ACAAACACCTCAGCCATCGCTTCACTGTCCCCGGAAGAATGGATACTTTG
GCCACGAGAAGCCAGGCATCTGCGATAAGTTCTACTTTTGCGTGGATGGT
CAGTTCAATATGATTACCTGCCCGGCTGGACTGGTCTTCAATCCCAAGAC
GGGCATATGTGGCTGGCCTGACCAAGTGGGCGTCACTGGCTGCAAGTCGG
AGGATGTCTTCGACTTTGAGTGCCCCAAGGTGAACGAGAGCATCGCAGTG
ACACATCCCCGCTACGCCGATCCCAACGATTGCCAGTTCTTCTACGTCTG
CGTCAACGGAGATCTGCCCAGGCGAAACGGATGCAAACTGGGCCAGGTCT
TCGACGAGGAGAAGGAGACCTGCGACTGGGCACGCAAGGTGCCAGATTGT
GCCGACTGGTACAAGGATCGTCTGACCGACAAGGAGCTGGATGAGCTGGA
GAACCCGAAGCCCAAGACCACGACCACCAAGAGGCCGCCACGTGTCCGCG
GTCAGTCGAGGCGCAAGCCCCAGCCGAAGCGAGTGGAACCGGAGCAGGTT
AAGGAGGAGGAGGAGGAGGAGGAGGAGGCAAGCTTTCTAGACCAT
BO05734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-B-RA | 1014 | CG4778-PA | 1..1011 | 17..1027 | 5040 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-B-RA | 1149 | CG4778-RA | 55..1065 | 17..1027 | 5040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10038218..10038614 | 453..849 | 1985 | 100 | Plus |
2L | 23513712 | 2L | 10036817..10037074 | 77..334 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 10038692..10038870 | 849..1027 | 895 | 100 | Plus |
2L | 23513712 | 2L | 10037161..10037279 | 334..452 | 595 | 100 | Plus |
2L | 23513712 | 2L | 10032893..10032955 | 17..79 | 300 | 98.4 | Plus |
Blast to na_te.dros performed 2014-11-28 00:17:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 819..911 | 729..824 | 130 | 65.3 | Plus |
BO05734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:01 Download gff for
BO05734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 47..1066 | 11..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:18 Download gff for
BO05734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 55..1065 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:55 Download gff for
BO05734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 51..1061 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:50 Download gff for
BO05734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-B-RA | 55..1065 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:50 Download gff for
BO05734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10032893..10032953 | 17..77 | 98 | -> | Plus |
2L | 10036818..10037073 | 78..333 | 100 | -> | Plus |
2L | 10037161..10037279 | 334..452 | 100 | -> | Plus |
2L | 10038218..10038614 | 453..849 | 100 | -> | Plus |
2L | 10038693..10038870 | 850..1029 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:18 Download gff for
BO05734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10032893..10032953 | 17..77 | 98 | -> | Plus |
arm_2L | 10036818..10037073 | 78..333 | 100 | -> | Plus |
arm_2L | 10037161..10037279 | 334..452 | 100 | -> | Plus |
arm_2L | 10038218..10038614 | 453..849 | 100 | -> | Plus |
arm_2L | 10038693..10038870 | 850..1029 | 98 | | Plus |
BO05734.pep Sequence
Translation from 16 to 1045
> BO05734.pep
MSANEMALVKICIFALALAVGLTATKAQESRGGFRGSNSQFRVGPGHPPS
QRHLPPRNRDPVQEASVVPKSKQTAAEKEYEPTEECPEPNGFYPDSKQCD
KYYACLDGVPTERLCADGMVFNDYSPIEEKCDLPYNIDCMKRSKLQTPQP
SLHCPRKNGYFGHEKPGICDKFYFCVDGQFNMITCPAGLVFNPKTGICGW
PDQVGVTGCKSEDVFDFECPKVNESIAVTHPRYADPNDCQFFYVCVNGDL
PRRNGCKLGQVFDEEKETCDWARKVPDCADWYKDRLTDKELDELENPKPK
TTTTKRPPRVRGQSRRKPQPKRVEPEQVKEEEEEEEEASFLDH
BO05734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-B-PA | 337 | CG4778-PA | 1..337 | 1..337 | 1879 | 100 | Plus |
obst-A-PB | 237 | CG17052-PB | 24..231 | 85..284 | 548 | 46.6 | Plus |
obst-A-PA | 237 | CG17052-PA | 24..231 | 85..284 | 548 | 46.6 | Plus |
Gasp-PB | 235 | CG10287-PB | 22..224 | 85..284 | 351 | 36.1 | Plus |
Gasp-PA | 258 | CG10287-PA | 22..224 | 85..284 | 351 | 36.1 | Plus |