Clone Sequence Records
BO05752.3prime Sequence
853 bp (795 high quality bases) assembled on 2005-12-02
> BO05752.3prime
ATGGTCTAGAAAGCTTGCCATCTTCTCCTGTATGAATGGATGAACTAGTG
CCTGGTTAAGGGAGATCCGTTTAGCCGGATCTAAGGCAAACATGTTCTCT
AGAAGATCCTTGAGCTGGGTGACCTTGCGATGTTGATCGTCGGGTAAGTT
CTGGTCAGCAATTAGTTCCTGCTGCAGGCTACGCGAAGGTTTGACTACAG
GCATTACAACAATTTTTTCCCTCTCAGTGAGCTTATCTATTTCATGGTAG
AGAAAGTTGCAGCTTTGGTCAAAATGCTGCTCTCTAAACTGACCTTTTCT
GATAATTCGGTTTGGTATCTTGCCTTTTACGTCCATGAAAAACTTAAGCA
TCTGATTGTTACTTTTCCCGCTAAACAGAATCTTTCCCGTGTATAACTCA
TAAATTGTGCAGCCCGCAGACCAGGTGTCGATTCCGTAGTCATAGGGAAT
ACCCAAAATTATCTCAGGCGAACGGTAGAACCGCGATACCAAGTACGGTG
TTATTTCGTTGTCGCTGATTGCCGAAGCAGAACCAAAATCACACAATTTT
AGTATCAGATTATTTTCGTTTACCAAAATGTTATCCGGCTTAATGTCAGC
ATGCAAAATGCCCGTCTTTTTTAACAATTTGAGCGCTAAGAATAGCTGCT
GCGTGTAGCTACGCACTGCTTTGATGTGGAGTCCCACATTCTTGCCATAC
TTTTTAAGTACTTCCCGCAAATTCATTGCTAATGGCTCAAACACCATACA
AAGATGCTGCTTGTGAAAGAAGTGACGATACAGTCGCAGGCAGTGGAAAC
GATCCTCTGGATCGGCATCGTTCAGCTTTTTTAATATTTCTAGTTCCCGC
AAG
BO05752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7028-PA | 2724 | CG7028-RA | 1887..2721 | 853..19 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7028-RB | 3112 | CG7028-RB | 2048..2882 | 853..19 | 4175 | 100 | Minus |
CG7028-RE | 2990 | CG7028-RE | 2036..2870 | 853..19 | 4175 | 100 | Minus |
CG7028-RD | 3097 | CG7028-RD | 2033..2867 | 853..19 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 208371..208910 | 219..758 | 2700 | 100 | Plus |
3L | 28110227 | 3L | 208117..208318 | 19..220 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 208971..209067 | 757..853 | 485 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-element | 4789 | Doc2-element DOC2 4789bp | 2776..2831 | 129..184 | 109 | 66.1 | Plus |
BO05752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:30:30 Download gff for
BO05752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-PA | 1887..2724 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:55:38 Download gff for
BO05752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-PA | 1887..2724 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:25 Download gff for
BO05752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-RA | 2036..2873 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:01 Download gff for
BO05752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-RD | 2033..2870 | 15..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:01 Download gff for
BO05752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 208113..208317 | 15..219 | 99 | <- | Plus |
3L | 208372..208908 | 220..756 | 100 | <- | Plus |
3L | 208971..209067 | 757..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:25 Download gff for
BO05752.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 208113..208317 | 15..219 | 99 | <- | Plus |
arm_3L | 208372..208908 | 220..756 | 100 | <- | Plus |
arm_3L | 208971..209067 | 757..853 | 100 | | Plus |
BO05752.5prime Sequence
850 bp (777 high quality bases) assembled on 2005-12-02
> BO05752.5prime
GAAGTTATCAGTCGACATGGCTGACGACAAAAGCTACGACTCCAGCAACA
ACAGCGAGACCGAAGAGCGTCGGGCCAAGCACAAAAAGGCTAAAAAGCAC
AAAAAACATAAAAAATCCTCGACTGGCAAGACCGAGAAGGACAGGCATGT
CCACAAGAAGCAGAAGAAGGCAAAAAAGCGCCCCCACCGAACAAGCGAAT
CCACAAACGAATCGGACGCCCCGGAAAACGCAAAGTTAAAGCTATCACAA
AATTGCGGGCTGAGCAGCAAGTTCACAGAAATCATGCAGAAGGCCAGCCG
GAATGGAGCCGATTTCCGTGTCGGCAAACCCCTGCTTCCGACGGATCCGA
GCAGCCTTGTTGAAGAAATCACCAAAACTATTCAGAATAAGATGCTGCCT
GTCCTGGAGGTGGCCAGTTCAAGCAGCGAAAGCGATGTGCCCGCCGATGC
CGCCAGTCCTATTATTTTGTCTATTATTGAAGACGAGCTTAATTTGGAGG
AATTGATGCGGCAGAAGGCCCTTCTGCAGGCGCGCCTGGGCGCCTATATG
TCGGATCCCGAGGCTGAGGATAAGGGCGATCTCCTCCCACACACACACTC
GCAGCAGCTGGTTGTCCACACCAAATCAGTGCTCAAAGCTGTCACATCCG
TACCGCAGCCCCAACCCAGCAAGTCTGCAGCGCCGTTGGCTACTGCAACC
AGTAAACATGCTAATATTAAAAAGTCTACCACGCATAACTCANATGAATC
CGATGTTATATTGTTGGATGATTCTAGCGGAGGCCAGCGAACCCCCTCGC
CTACACCCGAGAAACGAAGGCGCCACGCATCCCCGCTCCCCAGCGGCTCC
BO05752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7028-PA | 2724 | CG7028-RA | 1..824 | 17..840 | 4101 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7028-RB | 3112 | CG7028-RB | 150..982 | 17..850 | 4134 | 99.8 | Plus |
CG7028-RE | 2990 | CG7028-RE | 150..982 | 17..850 | 4134 | 99.8 | Plus |
CG7028-RD | 3097 | CG7028-RD | 150..982 | 17..850 | 4134 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 210814..211221 | 439..32 | 2040 | 100 | Minus |
3L | 28110227 | 3L | 210337..210738 | 840..439 | 1999 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:55:58 has no hits.
BO05752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:30:32 Download gff for
BO05752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-PA | 1..833 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:55:40 Download gff for
BO05752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-PA | 1..833 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:39 Download gff for
BO05752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-RA | 150..982 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:14 Download gff for
BO05752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-RD | 150..982 | 17..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:14 Download gff for
BO05752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 210815..211219 | 34..438 | 100 | <- | Minus |
3L | 211292..211308 | 17..33 | 100 | | Minus |
3L | 210328..210738 | 439..850 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:39 Download gff for
BO05752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 210328..210738 | 439..850 | 99 | <- | Minus |
arm_3L | 210815..211219 | 34..438 | 100 | <- | Minus |
arm_3L | 211292..211308 | 17..33 | 100 | | Minus |
BO05752.complete Sequence
2755 bp assembled on 2010-02-24
GenBank Submission: KX797842
> BO05752.complete
GAAGTTATCAGTCGACATGGCTGACGACAAAAGCTACGACTCCAGCAACA
ACAGCGAGACCGAAGAGCGTCGGGCCAAGCACAAAAAGGCTAAAAAGCAC
AAAAAACATAAAAAATCCTCGACTGGCAAGACCGAGAAGGACAGGCATGT
CCACAAGAAGCAGAAGAAGGCAAAAAAGCGCCCCCACCGAACAAGCGAAT
CCACAAACGAATCGGACGCCCCGGAAAACGCAAAGTTAAAGCTATCACAA
AATTGCGGGCTGAGCAGCAAGTTCACAGAAATCATGCAGAAGGCCAGCCG
GAATGGAGCCGATTTCCGTGTCGGCAAACCCCTGCTTCCGACGGATCCGA
GCAGCCTTGTTGAAGAAATCACCAAAACTATTCAGAATAAGATGCTGCCT
GTCCTGGAGGTGGCCAGTTCAAGCAGCGAAAGCGATGTGCCCGCCGATGC
CGCCAGTCCTATTATTTTGTCTATTATTGAAGACGAGCTTAATTTGGAGG
AATTGATGCGGCAGAAGGCCCTTCTGCAGGCGCGCCTGGGCGCCTATATG
TCGGATCCCGAGGCTGAGGATAAGGGCGATCTCCTCCCACACACACACTC
GCAGCAGCTGGTTGTCCACACCAAATCAGTGCTCAAAGCTGTCACATCCG
TACCGCAGCCCCAACCCAGCAAGTCTGCAGCGCCGTTGGCTACTGCAACC
AGTAAACATGCTAATATTAAAAAGTCTACCACGCATAACTCAAATGAATC
CGATGTTATATTGTTGGATGATTCTAGCGGAGGCCAGCGAACCCCCTCGC
CTACACCCGAGAAACGAAGGCGCCACGCATCCCCGCTCCCAGCGGCTCCG
AGAAGCCGTTGCCGTAGGGATCGTCGTTCGAGGGATCGCGACCGTTCACC
CCCACGTCGGCGAGCATCAGATCAGCAGACCCAGGTTCGCCCGCGGAGCC
GCAACCGCAACATGGAGGACCTACGACAGGAAATAAATCGCGACAAGCAA
AGGGAAAGACGGGACCATAGTCGAGACCGGGATCGGCGAGGATTGGATAG
GCCGCCGCCACCCACTGATATGAGACCAGGTCGTGCACGGGAGCGAGACG
TTCGGCCGAGTCGTATGCAGCGGTCGCACAGCCGCAGTAAGTTTGAATCA
GACAGGCGACGAGAGCGGGAGCGGCAAAAGGACCGGGATCGTGGTGGCGG
GCGCGTAGGAGCTCGCAGCGGGACAGACAACGGGGATAGAGATCGGTACA
AGGGTTCGCTGAGCGAGGGGCAAAATAAGCTCGACAAGGAGAGCAGTGAT
GAGGAGGTGAACGTAAACATTGACATTTTGGAGGAAGATGACGAAGAACG
TATCATTGAGCTACGTAGAAAGAAGCGCGAGGAGCTACTCAAGAAGCTGG
GCACTGGGCAAGAATCGCCAGCGCCTCATAACTCGGTCTCGTACGAGTCT
CGGAGTACCTCACAAGGGTCATCCCAACGCGAAAGACCTTTAAGAACGCC
GTCGCCCACGATGCCGTGCCCGAATCCACTTATCTCGGAAATTCCAAAGG
ATCGCGAAGATATGGATAACTCGACTAGCCAAAAGACTTGCTCCGCGAAG
GAAAAACGAAACGAGTGGGATATGTTCGCTGACCAAGACGTGGACTCTAA
TTTCGATTCACCCAACACAATCGTCCAAAATAAGCATCAACACGAAAATC
CCGCTCTCACAGACAATTGGGACGACGCTGAAGGTTATTACCGAGTTCGT
ATCGGTGAAGTTTTGGACAATCGCTACCTAGTGAATGGATACACAGGCCA
GGGTGTCTTCAGCAACGTAGTGCGTGGCAGAGACCAAGCTCGTGGGCAAG
CTAATGTAGCCATTAAGATCATACGGAACAACGAAATAATGCACAAAACT
GGCTTGCGGGAACTAGAAATATTAAAAAAGCTGAACGATGCCGATCCAGA
GGATCGTTTCCACTGCCTGCGACTGTATCGTCACTTCTTTCACAAGCAGC
ATCTTTGTATGGTGTTTGAGCCATTAGCAATGAATTTGCGGGAAGTACTT
AAAAAGTATGGCAAGAATGTGGGACTCCACATCAAAGCAGTGCGTAGCTA
CACGCAGCAGCTATTCTTAGCGCTCAAATTGTTAAAAAAGACGGGCATTT
TGCATGCTGACATTAAGCCGGATAACATTTTGGTAAACGAAAATAATCTG
ATACTAAAATTGTGTGATTTTGGTTCTGCTTCGGCAATCAGCGACAACGA
AATAACACCGTACTTGGTATCGCGGTTCTACCGTTCGCCTGAGATAATTT
TGGGTATTCCCTATGACTACGGAATCGACACCTGGTCTGCGGGCTGCACA
ATTTATGAGTTATACACGGGAAAGATTCTGTTTAGCGGGAAAAGTAACAA
TCAGATGCTTAAGTTTTTCATGGACGTAAAAGGCAAGATACCAAACCGAA
TTATCAGAAAAGGTCAGTTTAGAGAGCAGCATTTTGACCAAAGCTGCAAC
TTTCTCTACCATGAAATAGATAAGCTCACTGAGAGGGAAAAAATTGTTGT
AATGCCTGTAGTCAAACCTTCGCGTAGCCTGCAGCAGGAACTAATTGCTG
ACCAGAACTTACCCGACGATCAACATCGCAAGGTCACCCAGCTCAAGGAT
CTTCTAGAGAACATGTTTGCCTTAGATCCGGCTAAACGGATCTCCCTTAA
CCAGGCACTAGTTCATCCATTCATACAGGAGAAGATGGCAAGCTTTCTAG
ACCAT
BO05752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7028-RE | 2724 | CG7028-PE | 1..2721 | 17..2737 | 13605 | 100 | Plus |
CG7028-RA | 2724 | CG7028-PA | 1..2721 | 17..2737 | 13605 | 100 | Plus |
CG7028-RD | 2721 | CG7028-PD | 1..2718 | 17..2737 | 13525 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7028-RE | 2990 | CG7028-RE | 150..2870 | 17..2737 | 13605 | 100 | Plus |
CG7028-RA | 3100 | CG7028-RA | 150..2870 | 17..2737 | 13605 | 100 | Plus |
CG7028-RD | 3097 | CG7028-RD | 150..2867 | 17..2737 | 13525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 209784..210738 | 1393..439 | 4775 | 100 | Minus |
3L | 28110227 | 3L | 208371..208910 | 2537..1998 | 2700 | 100 | Minus |
3L | 28110227 | 3L | 210814..211221 | 439..32 | 2040 | 100 | Minus |
3L | 28110227 | 3L | 209450..209715 | 1657..1392 | 1330 | 100 | Minus |
3L | 28110227 | 3L | 209141..209374 | 1891..1658 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 208117..208318 | 2737..2536 | 1010 | 100 | Minus |
3L | 28110227 | 3L | 208971..209079 | 1999..1891 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:28:19 has no hits.
BO05752.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:42 Download gff for
BO05752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-RA | 155..2875 | 17..2739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:59 Download gff for
BO05752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-RA | 150..2870 | 17..2739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:37 Download gff for
BO05752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7028-RA | 150..2870 | 17..2739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:37 Download gff for
BO05752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 209450..209713 | 1394..1657 | 100 | <- | Minus |
3L | 208971..209079 | 1891..1999 | 100 | <- | Minus |
3L | 209142..209374 | 1658..1890 | 100 | <- | Minus |
3L | 208115..208317 | 2537..2739 | 99 | <- | Minus |
3L | 208372..208908 | 2000..2536 | 100 | <- | Minus |
3L | 209784..210738 | 439..1393 | 100 | <- | Minus |
3L | 210815..211219 | 34..438 | 100 | <- | Minus |
3L | 211292..211308 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:59 Download gff for
BO05752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 209450..209713 | 1394..1657 | 100 | <- | Minus |
arm_3L | 208115..208317 | 2537..2739 | 99 | <- | Minus |
arm_3L | 208372..208908 | 2000..2536 | 100 | <- | Minus |
arm_3L | 208971..209079 | 1891..1999 | 100 | <- | Minus |
arm_3L | 209142..209374 | 1658..1890 | 100 | <- | Minus |
arm_3L | 209784..210738 | 439..1393 | 100 | <- | Minus |
arm_3L | 210815..211219 | 34..438 | 100 | <- | Minus |
arm_3L | 211292..211308 | 17..33 | 100 | | Minus |
BO05752.pep Sequence
Translation from 16 to 2755
> BO05752.pep
MADDKSYDSSNNSETEERRAKHKKAKKHKKHKKSSTGKTEKDRHVHKKQK
KAKKRPHRTSESTNESDAPENAKLKLSQNCGLSSKFTEIMQKASRNGADF
RVGKPLLPTDPSSLVEEITKTIQNKMLPVLEVASSSSESDVPADAASPII
LSIIEDELNLEELMRQKALLQARLGAYMSDPEAEDKGDLLPHTHSQQLVV
HTKSVLKAVTSVPQPQPSKSAAPLATATSKHANIKKSTTHNSNESDVILL
DDSSGGQRTPSPTPEKRRRHASPLPAAPRSRCRRDRRSRDRDRSPPRRRA
SDQQTQVRPRSRNRNMEDLRQEINRDKQRERRDHSRDRDRRGLDRPPPPT
DMRPGRARERDVRPSRMQRSHSRSKFESDRRRERERQKDRDRGGGRVGAR
SGTDNGDRDRYKGSLSEGQNKLDKESSDEEVNVNIDILEEDDEERIIELR
RKKREELLKKLGTGQESPAPHNSVSYESRSTSQGSSQRERPLRTPSPTMP
CPNPLISEIPKDREDMDNSTSQKTCSAKEKRNEWDMFADQDVDSNFDSPN
TIVQNKHQHENPALTDNWDDAEGYYRVRIGEVLDNRYLVNGYTGQGVFSN
VVRGRDQARGQANVAIKIIRNNEIMHKTGLRELEILKKLNDADPEDRFHC
LRLYRHFFHKQHLCMVFEPLAMNLREVLKKYGKNVGLHIKAVRSYTQQLF
LALKLLKKTGILHADIKPDNILVNENNLILKLCDFGSASAISDNEITPYL
VSRFYRSPEIILGIPYDYGIDTWSAGCTIYELYTGKILFSGKSNNQMLKF
FMDVKGKIPNRIIRKGQFREQHFDQSCNFLYHEIDKLTEREKIVVMPVVK
PSRSLQQELIADQNLPDDQHRKVTQLKDLLENMFALDPAKRISLNQALVH
PFIQEKMASFLDH
BO05752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7028-PE | 907 | CG7028-PE | 1..907 | 1..907 | 4704 | 100 | Plus |
CG7028-PA | 907 | CG7028-PA | 1..907 | 1..907 | 4704 | 100 | Plus |
CG7028-PC | 912 | CG7028-PC | 1..912 | 1..907 | 4688 | 99.5 | Plus |
CG7028-PD | 906 | CG7028-PD | 1..906 | 1..907 | 4687 | 99.9 | Plus |
CG7028-PB | 911 | CG7028-PB | 1..911 | 1..907 | 4671 | 99.3 | Plus |