Clone BO05806 Report

Search the DGRC for BO05806

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptspd-2-RA
Protein status:BO05806.pep: Imported from assembly
Sequenced Size:3472

Clone Sequence Records

BO05806.3prime Sequence

924 bp (781 high quality bases) assembled on 2005-12-02

> BO05806.3prime
ATGGTCTAGAAAGCTTGCAAATTTAAAACTAATCGGGACACTGATGCGCT
CGTTTTCCATGGAGACCACAATGAGCGGCTCCCTTTCGAGCAAATCCTGC
CTGGGTGAGCGGAGCAGGCGCACATCGATCTCCGCGTGGCCGCCATCCGG
GGATACGTAGCACTCACTGGGACTGATTCGCACCAAATCGGGCACATTGC
ATGTGACCTCGATGAGCTGCCTGGAGCAGAAGCTGTTGGTTACGGACAAA
GTGGCCAGTGGCGAACAGCCCACTCCGAATTCCAGCAAACCTGGCTGCAC
ACACCAGTTTTGCTCGACGGGCGTCAACGTTGTGGTGTCCGCCTCCAATA
GCTCATCCACTGGCTCCAATAGATGGCTCTGCGTTGGCGTCGGCGAATTG
GCCACACATATGGTGCGGAATAGCACGGTTTCGTCGGCCTCCGGCAGGAA
CATCAGGGAACTCTCAGACGATTCATCAAAGTCCCGATTGAGGGTAAGCG
CAACATCAATAATCCGCACTACTGTGACCAAGTCCAGAATAAACTCTGGC
GGTTCGTTCAGCTGACCGATGTTGCGCACTGGCTGCTCGTCCGGAAATTC
GCCCCAAATGCTGTCCAGCATCGGCGATGTGAGTTTCTCTCGCTGTCGGC
TGCTCATCCTTTGGACCAAGCTACGCATACGCTGTCTGTTGGGCTCGTCT
CCGCAGAAAATCCGCATATTGGCCAGGGTCAACACCTGTGCGGTCTTCTT
AAGTATGTTCTTCAAGTCCTCACGATTCGGTCGGAAAAGTATCTGCACGC
AGCGCTCGCTATTTGGCGGCAATATCAAGCGGCTCGGACGTACCTCGAAG
GGCTCGCTGAGGCGCAGTTTCATGAGCACGGTGGAGTCCACTGATATACA
AACGAAAGCGGTGAGAGGGCCCTT

BO05806.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17286-PA 3441 CG17286-RA 2533..3438 924..19 4480 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3686 CG17286-RA 2581..3486 924..19 4500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16591407..16592312 19..924 4500 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 16:02:26 has no hits.

BO05806.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:31:49 Download gff for BO05806.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 2533..3441 15..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:25 Download gff for BO05806.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 2533..3441 15..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:22 Download gff for BO05806.3prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 2581..3494 10..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:25 Download gff for BO05806.3prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 2581..3494 10..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:25 Download gff for BO05806.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16591399..16592312 10..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:22 Download gff for BO05806.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16584499..16585412 10..924 99   Plus

BO05806.5prime Sequence

876 bp (755 high quality bases) assembled on 2005-12-02

> BO05806.5prime
GAAGTTATCAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCA
GTTTCATGGACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAG
GTCTTCGGCGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCAC
TGGTCGGGACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGC
GTGCGCTGGAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCA
AAGAGCACTGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGT
AACAGACGACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCA
CGCCCGCCACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACC
GGCAGGTCCACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCC
ATCCCTGTCGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTC
GCCTGTTGGAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTAT
CACTTATCACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTC
GCGCAGCTTACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAG
GTGGGGGATTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGAT
GAGAGCTTTGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGA
AATCTCCTGGGCGCAGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCA
CACAGGCGTTGAAGAAGATGCCGCACCAACATCCGAGATAGAAACCTCGG
TGTCCAATTCTGTCTTGNCCGGAGAT

BO05806.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17286-PA 3441 CG17286-RA 1..803 17..819 4015 100 Plus
CG18217-PA 1797 CG18217-RA 1..803 17..819 3590 97.8 Plus
CG17286-PA 3441 CG17286-RA 804..861 819..876 271 98.2 Plus
CG18217-PA 1797 CG18217-RA 804..861 819..876 271 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3686 CG17286-RA 49..909 17..876 4269 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16594064..16594821 857..101 3740 99.9 Minus
3L 28110227 3L 16601731..16602488 857..101 3590 98.5 Minus
3L 28110227 3L 16594882..16594966 101..17 425 100 Minus
3L 28110227 3L 16602547..16602632 102..17 325 91.9 Minus
Blast to na_te.dros performed on 2015-02-12 10:24:24 has no hits.

BO05806.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:31:50 Download gff for BO05806.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 1..861 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:27 Download gff for BO05806.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17286-PA 1..861 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:00 Download gff for BO05806.5prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 43..909 10..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:22 Download gff for BO05806.5prime
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 43..909 10..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:22 Download gff for BO05806.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16593984..16594002 858..876 94 <- Minus
3L 16594064..16594820 102..857 99 <- Minus
3L 16594882..16594972 10..101 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:00 Download gff for BO05806.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16587084..16587102 858..876 94 <- Minus
arm_3L 16587164..16587920 102..857 99 <- Minus
arm_3L 16587982..16588072 10..101 96   Minus

BO05806.complete Sequence

3472 bp assembled on 2008-08-14

GenBank Submission: FJ630149

> BO05806.complete
GAAGTTATCAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCA
GTTTCATGGACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAG
GTCTTCGGCGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCAC
TGGTCGGGACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGC
GTGCGCTGGAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCA
AAGAGCACTGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGT
AACAGACGACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCA
CGCCCGCCACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACC
GGCAGGTCCACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCC
ATCCCTGTCGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTC
GCCTGTTGGAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTAT
CACTTATCACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTC
GCGCAGCTTACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAG
GTGGGGGATTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGAT
GAGAGCTTTGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGA
AATCTCCTGGGCGCAGGAGTTCACGGCCATGCCGACGGCCACGTTGAGCA
CACAGGCGTTGAAGAAGATTGCCGCACCAACATCCGAGATAGAAACCTCG
GTGTCCAATTCTGTCTTGGCCGGAGATCCAGACTTTTCGCTGGGCAACTA
CTTCCAGACGCGTTCGGAAAATATATGGAACATTGTGAGCAATAGCAGCC
CGAATCGTTCGCGAACCAACCAACCGCTATTGGAACCAGAAAGTAACGTG
ACACTGGATTCGGTTGGCGAGAAGACCCCACAGCCAGACAATAAAACATA
CACTAAAACGGATGCCATAACTGGCTCGAATCTCGGACGCAATCTTATGC
GTAAGATGCAACAGGATCGGATTGAAACTGCGCTAAAGAGCAGGAATGGT
CTGGCAGCCAAAGAGACCAAGCGTCCGCCGTCGAGCTCCGAGATCCTAAG
TCTCTCCGCGATCGACAAGGCGCTAAGGGACATAGATCTCAATTCGGATA
CATCCACTGTAGAGGTTGTCAACCACCTGTGGGAGCATGGTCGTGGAAAC
AATTATGACGATGGGGAAAACAAGGAGAACCAGAGCAGCAACTCCCATGC
GGAGCGCACTTCGTGCGGCTCCAACAAGCTTACCGACACCATGAGTTTCA
CGGACTCTGTGCTAAACTCAACGGATTTTCGTCATTTGCAGCAGAGCATC
TCGCGCAAGCCGCTCAGTCCGCTGGCGGACCATCCGCAAATCACCATCAG
CCGTGCGGACACCGATCCCGTAGAGACAGAAGCCGAGGCGGACATCGATG
AGTGGCCCTCGACGCCGGTAAAGGAGCCTAGCCGCAGAGTGAGACGTACT
AAGATTTCTCCAAGAGCCGCAAGTCCGTCGAGTAGCGACGGCGTACGTCC
ACTGACCTGCACCGAGGATGAAAACGATGAGGAGGACGAGGACAAGACGC
CAGTGAACAAGAAGAGGGTTTCGATCGCTACAATGGGCTTGATTCCGCGC
AAAGCCTCCTCCTTAAGCAGCACTCGCTTGGATGGTTGTGACGTTGCCGT
GGCCTCTTCTACCGAACGTGATTTTGGCATTTCACCGAACCTGGCCAAAA
ATCTATCGCCCCTGTCCTCGCCAAGAAGCTGTCTCTCGTCGCCGCTGCTG
GACAGCACAACCAGTTCCGACCGCCGGCAGCTCATGAGTGGAGCAGCCCG
CAAAGCAAACTCCTCGCCCGCAGGTAGTGAGGCCAGTTCCACCAGCGGAT
TCACAGCGAGTGGAAGACGTGGGTTGGGAACCAGCTCTGTTGCAGTGCCA
CGTAGTATTTCGCGCTGCTCGAACTCTAGTGAGTTCAGTCATCGCGATGG
AAAACTGCTCCCCCTAAAGGTGACCCACACGACCCTCTGTTGGGGAAGCA
CAAAGCTGCGGACAGATGTGCGTAAGTCCATGCAGGTTAAGAACACAGCG
GACAAACGGCTGGTCATTCGGCTTGGCATCCAGGGACCCGGATTCCAGCT
GGTGGGCACCGACAGCAGCACGATCACACTCCAAGCCATGGAATGCCGCT
CGGTAGTGATCAACTTTTGCCCCACTGTCTGTGGAGCGGCCATCGGAGCC
TTGTCTTTCTATGCACCACCAGGAGCGCATAACAGCAACCAGCCGGGCCT
AGAGATTCCGTTGTACGGCTACGGGGGCAGTGCGTCCATCACCATAAACG
GTCTGCTAAAGGGACCGGTGGGCGCCAGTTTCCTTACCATCGGCGATGTA
TGCGAGCTGTCCGCTGGTCCGCTTTCGGCGAATCTCAAGTTTCACAACAA
GGGCCCTCTCACCGCTTTCGTTGGTATATCAGTGGACTCCACCGTGCTCA
TGAAACTGCGCCTCAGCGAGGCCTTCGAGGTACGTCCGAGCCGCTTGATA
TTGCCGCCAAATAGCGAGCGCTGCGTGCAGATACTTTTCCGACCGAATCG
TGAGGACTTGAAGAACATACTTAAGAAGACCGCACAGGTGTTGACCCTGG
CCAATATGCGGATTTTCTGCGGAGACGAGCCCAACAGACAGCGTATGCGT
AGCTTGGTCCAAAGGATGAGCAGCCGACAGCGAGAGAAACTCACATCGCC
GATGCTGGACAGCATTTGGGGCGAATTTCCGGACGAGCAGCCAGTGCGCA
ACATCGGTCAGCTGAACGAACCGCCAGAGTTTATTCTGGACTTGGTCACA
GTAGTGCGGATTATTGATGTTGCGCTTACCCTCAATCGGGACTTTGATGA
ATCGTCTGAGAGTTCCCTGATGTTCCTGCCGGAGGCCGACGAAACCGTGC
TATTCCGCACCATATGTGTGGCCAATTCGCCGACGCCAACGCAGAGCCAT
CTATTGGAGCCAGTGGATGAGCTATTGGAGGCGGACACCACAACGTTGAC
GCCCGTCGAGCAAAACTGGTGTGTGCAGCCAGGTTTGCTGGAATTCGGAG
TGGGCTGTTCGCCACTGGCCACTTTGTCCGTAACCAACAGCTTCTGCTCC
AGGCAGCTCATCGAGGTCACATGCAATGTGCCCGATTTGGTGCGAATCAG
TCCCAGTGAGTGCTACGTATCCCCGGATGGCGGCCACGCGGAGATCGATG
TGCGCCTGCTCCGCTCACCCAGGCAGGATTTGCTCGAAAGGGAGCCGCTC
ATTGTGGTCTCCATGGAAAACGAGCGCATCAGTGTCCCGATTAGTTTTAA
ATTTGCAAGCTTTCTAGACCAT

BO05806.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3441 CG17286-PA 1..3438 17..3454 17190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-RA 3686 CG17286-RA 49..3486 17..3454 17190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16591407..16594002 3454..859 12980 100 Minus
3L 28110227 3L 16594064..16594821 858..101 3790 100 Minus
3L 28110227 3L 16601731..16602488 858..101 3640 98.7 Minus
3L 28110227 3L 16601089..16601576 1470..983 2380 99.2 Minus
3L 28110227 3L 16601572..16601669 956..859 475 99 Minus
3L 28110227 3L 16594882..16594966 101..17 425 100 Minus
3L 28110227 3L 16602547..16602632 102..17 325 91.9 Minus
Blast to na_te.dros performed on 2014-11-27 20:00:21 has no hits.

BO05806.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:38 Download gff for BO05806.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 71..3522 10..3463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:00 Download gff for BO05806.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 49..3486 17..3456 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:46 Download gff for BO05806.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 77..3514 17..3456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:38 Download gff for BO05806.complete
Subject Subject Range Query Range Percent Splice Strand
spd-2-RA 49..3486 17..3456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:38 Download gff for BO05806.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16591405..16594002 859..3456 99 <- Minus
3L 16594064..16594820 102..858 100 <- Minus
3L 16594882..16594966 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:00 Download gff for BO05806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16584505..16587102 859..3456 99 <- Minus
arm_3L 16587164..16587920 102..858 100 <- Minus
arm_3L 16587982..16588066 17..101 100   Minus

BO05806.pep Sequence

Translation from 16 to 3472

> BO05806.pep
MDSSSGSQGNGSFMDQNSLGILNMDNLKVFGDLSSFSKSGRRSGTGRDSP
AVHERLREERLRALETLEKPRPSRSSQAKSTALQMRLSTNISELVTDDTI
DLNSSSSFALVTPATKGTNISFEPAEITGRSTLCQAGKQRRREKPSLSVA
EILKSSFVEKARLLERKLQDASQAEASYHLSRGSSSSLSDSFNCSRSLPR
TADMSELSLNGGGGFSFGSASLAAEGQDESFAPAELMQSKLVLGEISWAQ
EFTAMPTATLSTQALKKIAAPTSEIETSVSNSVLAGDPDFSLGNYFQTRS
ENIWNIVSNSSPNRSRTNQPLLEPESNVTLDSVGEKTPQPDNKTYTKTDA
ITGSNLGRNLMRKMQQDRIETALKSRNGLAAKETKRPPSSSEILSLSAID
KALRDIDLNSDTSTVEVVNHLWEHGRGNNYDDGENKENQSSNSHAERTSC
GSNKLTDTMSFTDSVLNSTDFRHLQQSISRKPLSPLADHPQITISRADTD
PVETEAEADIDEWPSTPVKEPSRRVRRTKISPRAASPSSSDGVRPLTCTE
DENDEEDEDKTPVNKKRVSIATMGLIPRKASSLSSTRLDGCDVAVASSTE
RDFGISPNLAKNLSPLSSPRSCLSSPLLDSTTSSDRRQLMSGAARKANSS
PAGSEASSTSGFTASGRRGLGTSSVAVPRSISRCSNSSEFSHRDGKLLPL
KVTHTTLCWGSTKLRTDVRKSMQVKNTADKRLVIRLGIQGPGFQLVGTDS
STITLQAMECRSVVINFCPTVCGAAIGALSFYAPPGAHNSNQPGLEIPLY
GYGGSASITINGLLKGPVGASFLTIGDVCELSAGPLSANLKFHNKGPLTA
FVGISVDSTVLMKLRLSEAFEVRPSRLILPPNSERCVQILFRPNREDLKN
ILKKTAQVLTLANMRIFCGDEPNRQRMRSLVQRMSSRQREKLTSPMLDSI
WGEFPDEQPVRNIGQLNEPPEFILDLVTVVRIIDVALTLNRDFDESSESS
LMFLPEADETVLFRTICVANSPTPTQSHLLEPVDELLEADTTTLTPVEQN
WCVQPGLLEFGVGCSPLATLSVTNSFCSRQLIEVTCNVPDLVRISPSECY
VSPDGGHAEIDVRLLRSPRQDLLEREPLIVVSMENERISVPISFKFASFL
DH

BO05806.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
spd-2-PA 1146 CG17286-PA 1..1146 1..1146 5804 100 Plus