Clone Sequence Records
BO05808.3prime Sequence
865 bp (776 high quality bases) assembled on 2005-12-02
> BO05808.3prime
ATGGTCTAGAAAGCTTGCAGTGGACTTTTTCTCAGCATTCTCCAGTTTGA
CGGCGCGCTTGGCCATGATCCAAAAGTAGAGACTCGGGCAAAGATGACGA
AGATAGTAGGCGATCTTGGCCTGGACATCGCTGACAATAATGTCCGGTTC
TTTGCGAAGAATGCACTGCAGAATGCGTTCTGCAAGTTTATCCGGTGACA
TGCCCTTGGCCGTGGTTTCATCCACTTTGCCGTAACTGCTTCCCGATCCT
GTCAATGCATTCAAGGACAGCTGGGTGCGTATGTAGCCAGGACTCACGCA
GGACACGTTTATGTTCTTATTTGCCACCTCGGCTCGCAGGGAATCGGCAA
AAGCCTGCATGGCATGTTTCGAGGCGGAATAGGCAGCCCTTTGGGGAATG
GCAAACTTTCCCTGAACAGAGCTAATGAAGCATATGTGACCACTACCACG
TTTCACCATCGAAGGAAGTAGAGCTTTGGTCAGGGCAACGCTGCCAAAGT
AGTTAACCACCATCACCTTGAGATCCACATCCACTGCCGTGGATGCCACA
TCGGCTCGCACACTGATCCCTCCGTTGTTGATGAGTATGTCCACTTGGTT
GTACACGGCCAGCACCCGGGTGACAAATTCTGGAATGGAGTTCAGTTCAG
CCAGATCCAGGGGAAGCACTGTCGGCGGATAAGCGGGATCCACATCCAAT
GCGAGGAGGTCCTTCTTAACCCGCTCCAATTCCTGAGTGCGACGTGCCGC
CAAAATAACCCTGCATCCAGCGCGGTAGAAGACGTGGGCCAGAGATTCGC
CCAGGCCCGAACTGGCCCCCGTGATGAGCACCACCTGCCGGGCATTGATT
GCGGAAATTTCTGGC
BO05808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 981 | CG7601-RA | 161..978 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 226..1072 | 864..19 | 4165 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29735714..29735961 | 228..475 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 29736016..29736233 | 474..691 | 1090 | 100 | Plus |
3R | 32079331 | 3R | 29735447..29735655 | 19..227 | 1045 | 100 | Plus |
3R | 32079331 | 3R | 29736289..29736437 | 690..838 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:01:28 has no hits.
BO05808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:31:53 Download gff for
BO05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 130..981 | 16..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:31 Download gff for
BO05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 130..981 | 16..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:51 Download gff for
BO05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 224..1079 | 11..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:59 Download gff for
BO05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 224..1079 | 11..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:59 Download gff for
BO05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29735440..29735655 | 11..227 | 98 | <- | Plus |
3R | 29735714..29735959 | 228..473 | 100 | <- | Plus |
3R | 29736016..29736232 | 474..690 | 100 | <- | Plus |
3R | 29736290..29736433 | 691..834 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:51 Download gff for
BO05808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25561162..25561377 | 11..227 | 98 | <- | Plus |
arm_3R | 25561436..25561681 | 228..473 | 100 | <- | Plus |
arm_3R | 25561738..25561954 | 474..690 | 100 | <- | Plus |
arm_3R | 25562012..25562155 | 691..834 | 100 | <- | Plus |
BO05808.5prime Sequence
804 bp (768 high quality bases) assembled on 2005-11-29
> BO05808.5prime
GAAGTTATCAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCA
GCAGCGACTGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCG
GTGGCACTTCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCA
GAAATTCCGCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCA
GTTCGGGCCTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGC
AGGGTTATTTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAA
GGACCTCCTCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTC
CCCTGGATCTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTG
CTGGCCGTGTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAG
TGTGCGAGCCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGA
TGGTGGTTAACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCT
TCGATGGTGAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCA
GGGAAAGTTTGCCATTCCCCAAAGGGCTGCCTATTCCGCCTCGAAACATG
CCATGCAGGCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAGAAC
ATAAACGTGTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTT
GAATGCATTGACAGGATCGGGGAGCAGTTACGGCAAAGTGGATGAAACCA
CGGC
BO05808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 981 | CG7601-RA | 1..788 | 17..804 | 3915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 95..882 | 17..804 | 3925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29735714..29735961 | 785..538 | 1225 | 99.6 | Minus |
3R | 32079331 | 3R | 29736016..29736233 | 539..322 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 29736487..29736651 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 29736289..29736435 | 323..177 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:37:41 has no hits.
BO05808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:31:54 Download gff for
BO05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 1..788 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:32 Download gff for
BO05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-PA | 1..788 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:36 Download gff for
BO05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..882 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:27 Download gff for
BO05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..882 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:27 Download gff for
BO05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29735637..29735655 | 786..804 | 100 | <- | Minus |
3R | 29735714..29735959 | 540..785 | 99 | <- | Minus |
3R | 29736016..29736232 | 323..539 | 100 | <- | Minus |
3R | 29736290..29736433 | 179..322 | 100 | <- | Minus |
3R | 29736490..29736645 | 23..178 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:36 Download gff for
BO05808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25561359..25561377 | 786..804 | 100 | <- | Minus |
arm_3R | 25561436..25561681 | 540..785 | 99 | <- | Minus |
arm_3R | 25561738..25561954 | 323..539 | 100 | <- | Minus |
arm_3R | 25562012..25562155 | 179..322 | 100 | <- | Minus |
arm_3R | 25562212..25562367 | 23..178 | 100 | <- | Minus |
BO05808.complete Sequence
1012 bp (1012 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630150
> BO05808.complete
GAAGTTATCAGTCGACATGAAGGTGCAGGACATGGACAAATGTGCTCCCA
GCAGCGACTGGAACGTTCTTTACTGGGTGCTGGGCACGGTCCTGATGCCG
GTGGCACTTCCACTGGCCATCATCAACATTTGGCAGCGATTCCAGGCCCA
GAAATTCCGCAATCAATTGCCCGGCAAGGTGGTGCTCATCACGGGGGCCA
GTTCGGGCCTGGGCGAATCTCTGGCCCACGTCTTCTACCGCGCTGGATGC
AGGGTTATTTTGGCGGCACGTCGCACTCAGGAATTGGAGCGGGTTAAGAA
GGACCTCCTCGCATTGGATGTGGATCCCGCTTATCCGCCGACAGTGCTTC
CCCTGGATCTGGCTGAACTGAACTCCATTCCAGAATTTGTCACCCGGGTG
CTGGCCGTGTACAACCAAGTGGACATACTCATCAACAACGGAGGGATCAG
TGTGCGAGCCGATGTGGCATCCACGGCAGTGGATGTGGATCTCAAGGTGA
TGGTGGTTAACTACTTTGGCAGCGTTGCCCTGACCAAAGCTCTACTTCCT
TCGATGGTGAAACGTGGTAGTGGTCACATATGCTTCATTAGCTCTGTTCA
GGGAAAGTTTGCCATTCCCCAAAGGGCTGCCTATTCCGCCTCGAAACATG
CCATGCAGGCTTTTGCCGATTCCCTGCGAGCCGAGGTGGCAAATAAGAAC
ATAAACGTGTCCTGCGTGAGTCCTGGCTACATACGCACCCAGCTGTCCTT
GAATGCATTGACAGGATCGGGAAGCAGTTACGGCAAAGTGGATGAAACCA
CGGCCAAGGGCATGTCACCGGATAAACTTGCAGAACGCATTCTGCAGTGC
ATTCTTCGCAAAGAACCGGACATTATTGTCAGCGATGTCCAGGCCAAGAT
CGCCTACTATCTTCGTCATCTTTGCCCGAGTCTCTACTTTTGGATCATGG
CCAAGCGCGCCGTCAAACTGGAGAATGCTGAGAAAAAGTCCACTGCAAGC
TTTCTAGACCAT
BO05808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 981 | CG7601-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-RA | 1250 | CG7601-RA | 95..1072 | 17..994 | 4890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29735714..29735961 | 785..538 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 29736016..29736233 | 539..322 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 29735447..29735655 | 994..786 | 1045 | 100 | Minus |
3R | 32079331 | 3R | 29736487..29736651 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 29736289..29736435 | 323..177 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:05:25 has no hits.
BO05808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:25 Download gff for
BO05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:41 Download gff for
BO05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 170..1154 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:57 Download gff for
BO05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..1072 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:26 Download gff for
BO05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 170..1154 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:13 Download gff for
BO05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7601-RA | 95..1072 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:13 Download gff for
BO05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29736016..29736232 | 323..539 | 100 | <- | Minus |
3R | 29735714..29735959 | 540..785 | 100 | <- | Minus |
3R | 29736290..29736433 | 179..322 | 100 | <- | Minus |
3R | 29736490..29736651 | 17..178 | 100 | | Minus |
3R | 29735444..29735655 | 786..996 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:57 Download gff for
BO05808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25562012..25562155 | 179..322 | 100 | <- | Minus |
arm_3R | 25562212..25562373 | 17..178 | 100 | | Minus |
arm_3R | 25561166..25561377 | 786..996 | 99 | <- | Minus |
arm_3R | 25561436..25561681 | 540..785 | 100 | <- | Minus |
arm_3R | 25561738..25561954 | 323..539 | 100 | <- | Minus |
BO05808.pep Sequence
Translation from 16 to 1012
> BO05808.pep
MKVQDMDKCAPSSDWNVLYWVLGTVLMPVALPLAIINIWQRFQAQKFRNQ
LPGKVVLITGASSGLGESLAHVFYRAGCRVILAARRTQELERVKKDLLAL
DVDPAYPPTVLPLDLAELNSIPEFVTRVLAVYNQVDILINNGGISVRADV
ASTAVDVDLKVMVVNYFGSVALTKALLPSMVKRGSGHICFISSVQGKFAI
PQRAAYSASKHAMQAFADSLRAEVANKNINVSCVSPGYIRTQLSLNALTG
SGSSYGKVDETTAKGMSPDKLAERILQCILRKEPDIIVSDVQAKIAYYLR
HLCPSLYFWIMAKRAVKLENAEKKSTASFLDH
BO05808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7601-PA | 326 | CG7601-PA | 1..326 | 1..326 | 1648 | 100 | Plus |
CG31937-PA | 321 | CG31937-PA | 12..256 | 17..263 | 302 | 33.1 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..189 | 51..246 | 233 | 30.1 | Plus |
CG31549-PB | 257 | CG31549-PB | 7..216 | 54..275 | 233 | 28.8 | Plus |
CG31549-PA | 257 | CG31549-PA | 7..216 | 54..275 | 233 | 28.8 | Plus |