Clone BO05809 Report

Search the DGRC for BO05809

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptPeb-RA
Protein status:BO05809.pep: validated full length
Sequenced Size:1165

Clone Sequence Records

BO05809.3prime Sequence

778 bp (707 high quality bases) assembled on 2005-12-02

> BO05809.3prime
ATGGTCTAGAAAGCTTGCTCCCAGAAATCCGAGGAAAGGATGCAAAAGTT
GTCCTAATATGCCTTTTACCGATGGCACTGTGCCGCCAACATCCAAGGTG
ATAGACCCCTGCAATCCGCGACCTAAAGGACCAAATTTCCCACCAAAGAT
TGGAATAATTTGACTAGGTGAACTAAATCCGAATAAGTTTCCTAGTGATC
CAAAGAAATTTCCGATTGGAGTAAAAATGCCAAAGGGGTCTAACGAAGGT
CCACTAAGAAATCCAGTTCCGAAAAGTCCATGTTGTCCGAAAATTCCCGT
ACCGAACAGTCCACCGTTTCCAAAGATTCCGCCAGCAACATTTAGCACAC
TATTTGGAACTACCGAACCGTCTAAATGACCAGGAAGGATACCACCAGGG
AAAGGTCTTCCTGGACGGTTCGGCCGAGGACCACCTAGTATCCATGGAAA
TTGCCATGGTCCAAGTGGTCCGCCTGGTGAAGGTGGAGATCCACCAGGGA
AAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGATGGC
CCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACCAGGGGAAGGTCCACC
AGGTGAAGGTTCACCAGGTGAAGGTTCACCAGGGGAAGGTCCACCAGGGG
AAGGTCCACCAGGGAAAAGTCCACCTGGACGTATCGGTGGAGAATTAATT
GGTAGCCATGGTGGTCGATTAGGCCAATAAGGACCTAATGGATAACGAAG
GGGCCATCCAAGTGGATAATTATAGCCA

BO05809.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2668-PA 1134 Peb-RA 372..1131 778..19 3800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 395..1154 778..19 3800 100 Minus
Peb-RA 1202 CG2668-RA 395..1154 778..19 3800 100 Minus
Peb-RB 1529 CG2668-RB 555..683 663..535 480 91.5 Minus
Peb-RA 1202 CG2668-RA 555..683 663..535 480 91.5 Minus
Peb-RB 1529 CG2668-RB 570..682 663..551 460 93.8 Minus
Peb-RA 1202 CG2668-RA 570..682 663..551 460 93.8 Minus
Peb-RB 1529 CG2668-RB 573..683 675..565 420 91.9 Minus
Peb-RA 1202 CG2668-RA 573..683 675..565 420 91.9 Minus
Peb-RB 1529 CG2668-RB 588..683 675..580 345 90.6 Minus
Peb-RA 1202 CG2668-RA 588..683 675..580 345 90.6 Minus
Peb-RB 1529 CG2668-RB 603..683 675..595 270 88.9 Minus
Peb-RA 1202 CG2668-RA 603..683 675..595 270 88.9 Minus
Peb-RB 1529 CG2668-RB 629..692 664..601 230 90.6 Minus
Peb-RA 1202 CG2668-RA 629..692 664..601 230 90.6 Minus
Peb-RB 1529 CG2668-RB 633..692 675..616 210 90 Minus
Peb-RA 1202 CG2668-RA 633..692 675..616 210 90 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175501..25176260 19..778 3800 100 Plus
2R 25286936 2R 25175972..25176100 535..663 480 91.5 Plus
2R 25286936 2R 25175973..25176085 551..663 460 93.8 Plus
2R 25286936 2R 25175972..25176082 565..675 420 91.9 Plus
2R 25286936 2R 25175972..25176067 580..675 345 90.6 Plus
2R 25286936 2R 25175972..25176052 595..675 270 88.9 Plus
2R 25286936 2R 25175963..25176026 601..664 230 90.6 Plus
2R 25286936 2R 25175963..25176022 616..675 210 90 Plus
Blast to na_te.dros performed on 2015-02-13 05:56:30 has no hits.

BO05809.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:31:55 Download gff for BO05809.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-PA 373..1134 18..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:34 Download gff for BO05809.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2668-PA 373..1134 18..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:43 Download gff for BO05809.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 396..1154 19..777 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:08 Download gff for BO05809.3prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 396..1154 19..777 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:08 Download gff for BO05809.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25175501..25176259 19..777 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:43 Download gff for BO05809.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063024..21063782 19..777 100   Plus

BO05809.5prime Sequence

834 bp (791 high quality bases) assembled on 2005-11-29

> BO05809.5prime
GAAGTTATCAGTCGACATGGTGCGACAATTGATACTCGTCCTTTCTCTGA
TTCTCTTCTGCGGCAGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAG
AGCGAGTCTGCCATCCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACG
TTACTTAGATGTTCTCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAG
ACGGTGGAAATTCAGCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCA
AATATATTGGCAAGAGGTGATATCGCCAGTTCCGGATATAGTAAAATTTC
AGCTGGCGTTGGCAAGGGAAGCGACCTAATCACTATTATTAAGAACACTC
GATCCTACGATCCGTACCTTATTCCACCAGGTATTCCTGGCTATAATTAT
CCACTTGGATGGCCCCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCG
ACCACCATGGCTACCAATTAATTCTCCACCGATACGTCCAGGTGGACTTT
TCCCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCT
GGTGAACCTTCACCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGG
ACCTTCCCCTGGTGGGCCATCCCCTGGTGGACCTTCCCCTGGTGGACCTT
CCCCTGGTGGACCTTTCCCTGGTGGATCTCCACCTTCACCAGGCGGACCA
CTTGGACCATGGCAATTTCCATGGATACTAGGTGGTCCTCGGCCGAACCG
TCCAGGAAGACCTTTCCCTGGTGGTATCCTTCCTGGTCATTTAGACGGTT
CGGTAGTTCCAAATAGTGTGCTAAATGTTGCTGG

BO05809.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2668-PA 1134 Peb-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 24..841 17..834 4090 100 Plus
Peb-RA 1202 CG2668-RA 24..841 17..834 4090 100 Plus
Peb-RB 1529 CG2668-RB 555..683 503..631 480 91.5 Plus
Peb-RA 1202 CG2668-RA 555..683 503..631 480 91.5 Plus
Peb-RB 1529 CG2668-RB 570..682 503..615 460 93.8 Plus
Peb-RA 1202 CG2668-RA 570..682 503..615 460 93.8 Plus
Peb-RB 1529 CG2668-RB 573..683 491..601 420 91.9 Plus
Peb-RA 1202 CG2668-RA 573..683 491..601 420 91.9 Plus
Peb-RB 1529 CG2668-RB 588..683 491..586 345 90.6 Plus
Peb-RA 1202 CG2668-RA 588..683 491..586 345 90.6 Plus
Peb-RB 1529 CG2668-RB 603..683 491..571 270 88.9 Plus
Peb-RA 1202 CG2668-RA 603..683 491..571 270 88.9 Plus
Peb-RB 1529 CG2668-RB 629..692 502..565 230 90.6 Plus
Peb-RA 1202 CG2668-RA 629..692 502..565 230 90.6 Plus
Peb-RB 1529 CG2668-RB 633..692 491..550 210 90 Plus
Peb-RA 1202 CG2668-RA 633..692 491..550 210 90 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175814..25176617 834..31 4020 100 Minus
2R 25286936 2R 25175972..25176100 631..503 480 91.5 Minus
2R 25286936 2R 25175973..25176085 615..503 460 93.8 Minus
2R 25286936 2R 25175972..25176082 601..491 420 91.9 Minus
2R 25286936 2R 25175972..25176067 586..491 345 90.6 Minus
2R 25286936 2R 25175972..25176052 571..491 270 88.9 Minus
2R 25286936 2R 25175963..25176026 565..502 230 90.6 Minus
2R 25286936 2R 25175963..25176022 550..491 210 90 Minus
Blast to na_te.dros performed on 2015-02-11 22:02:10 has no hits.

BO05809.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:31:56 Download gff for BO05809.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:35 Download gff for BO05809.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2668-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:52 Download gff for BO05809.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..841 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:12 Download gff for BO05809.5prime
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..841 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:12 Download gff for BO05809.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25175814..25176616 32..834 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:52 Download gff for BO05809.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063337..21064139 32..834 100 <- Minus

BO05809.complete Sequence

1165 bp (1165 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630151

> BO05809.complete
GAAGTTATCAGTCGACATGGTGCGACAATTGATACTCGTCCTTTCTCTGA
TTCTCTTCTGCGGCAGCTCACATGCTGTTGTCAGTGAATTGGCCCGTCAG
AGCGAGTCTGCCATCCAGGGTTTGGCAGACATAAAGATGGCGCCTCTACG
TTACTTAGATGTTCTCTTTGGTGGAAATCCCGGAGGACTTCGGGGTCTAG
ACGGTGGAAATTCAGCATCTTTATCAACCTTACAAGCAGCTAAAGTAGCA
AATATATTGGCAAGAGGTGATATCGCCAGTTCCGGATATAGTAAAATTTC
AGCTGGCGTTGGCAAGGGAAGCGACCTAATCACTATTATTAAGAACACTC
GATCCTACGATCCGTACCTTATTCCACCAGGTATTCCTGGCTATAATTAT
CCACTTGGATGGCCCCTTCGTTATCCATTAGGTCCTTATTGGCCTAATCG
ACCACCATGGCTACCAATTAATTCTCCACCGATACGTCCAGGTGGACTTT
TCCCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGAACCTTCACCT
GGTGAACCTTCACCTGGTGGACCTTCCCCTGGTGGACCTTCCCCTGGTGG
ACCTTCCCCTGGTGGGCCATCCCCTGGTGGACCTTCCCCTGGTGGACCTT
CCCCTGGTGGACCTTTCCCTGGTGGATCTCCACCTTCACCAGGCGGACCA
CTTGGACCATGGCAATTTCCATGGATACTAGGTGGTCCTCGGCCGAACCG
TCCAGGAAGACCTTTCCCTGGTGGTATCCTTCCTGGTCATTTAGACGGTT
CGGTAGTTCCAAATAGTGTGCTAAATGTTGCTGGCGGAATCTTTGGAAAC
GGTGGACTGTTCGGTACGGGAATTTTCGGACAACATGGACTTTTCGGAAC
TGGATTTCTTAGTGGACCTTCGTTAGACCCCTTTGGCATTTTTACTCCAA
TCGGAAATTTCTTTGGATCACTAGGAAACTTATTCGGATTTAGTTCACCT
AGTCAAATTATTCCAATCTTTGGTGGGAAATTTGGTCCTTTAGGTCGCGG
ATTGCAGGGGTCTATCACCTTGGATGTTGGCGGCACAGTGCCATCGGTAA
AAGGCATATTAGGACAACTTTTGCATCCTTTCCTCGGATTTCTGGGAGCA
AGCTTTCTAGACCAT

BO05809.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1134 CG2668-PB 1..1131 17..1147 5655 100 Plus
Peb-RA 1134 CG2668-PA 1..1131 17..1147 5655 100 Plus
Peb-RB 1134 CG2668-PB 532..660 503..631 480 91.5 Plus
Peb-RA 1134 CG2668-PA 532..660 503..631 480 91.5 Plus
Peb-RB 1134 CG2668-PB 547..659 503..615 460 93.8 Plus
Peb-RA 1134 CG2668-PA 547..659 503..615 460 93.8 Plus
Peb-RB 1134 CG2668-PB 550..660 491..601 420 91.9 Plus
Peb-RA 1134 CG2668-PA 550..660 491..601 420 91.9 Plus
Peb-RB 1134 CG2668-PB 565..660 491..586 345 90.6 Plus
Peb-RA 1134 CG2668-PA 565..660 491..586 345 90.6 Plus
Peb-RB 1134 CG2668-PB 580..660 491..571 270 88.9 Plus
Peb-RA 1134 CG2668-PA 580..660 491..571 270 88.9 Plus
Peb-RB 1134 CG2668-PB 606..669 502..565 230 90.6 Plus
Peb-RA 1134 CG2668-PA 606..669 502..565 230 90.6 Plus
Peb-RB 1134 CG2668-PB 610..669 491..550 210 90 Plus
Peb-RA 1134 CG2668-PA 610..669 491..550 210 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-RB 1529 CG2668-RB 24..1154 17..1147 5655 100 Plus
Peb-RA 1202 CG2668-RA 24..1154 17..1147 5655 100 Plus
Peb-RB 1529 CG2668-RB 555..683 503..631 480 91.5 Plus
Peb-RA 1202 CG2668-RA 555..683 503..631 480 91.5 Plus
Peb-RB 1529 CG2668-RB 570..682 503..615 460 93.8 Plus
Peb-RA 1202 CG2668-RA 570..682 503..615 460 93.8 Plus
Peb-RB 1529 CG2668-RB 573..683 491..601 420 91.9 Plus
Peb-RA 1202 CG2668-RA 573..683 491..601 420 91.9 Plus
Peb-RB 1529 CG2668-RB 588..683 491..586 345 90.6 Plus
Peb-RA 1202 CG2668-RA 588..683 491..586 345 90.6 Plus
Peb-RB 1529 CG2668-RB 603..683 491..571 270 88.9 Plus
Peb-RA 1202 CG2668-RA 603..683 491..571 270 88.9 Plus
Peb-RB 1529 CG2668-RB 629..692 502..565 230 90.6 Plus
Peb-RA 1202 CG2668-RA 629..692 502..565 230 90.6 Plus
Peb-RB 1529 CG2668-RB 633..692 491..550 210 90 Plus
Peb-RA 1202 CG2668-RA 633..692 491..550 210 90 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25175501..25176617 1147..31 5585 100 Minus
2R 25286936 2R 25175972..25176100 631..503 480 91.5 Minus
2R 25286936 2R 25175973..25176085 615..503 460 93.8 Minus
2R 25286936 2R 25175972..25176082 601..491 420 91.9 Minus
2R 25286936 2R 25175972..25176067 586..491 345 90.6 Minus
2R 25286936 2R 25175972..25176052 571..491 270 88.9 Minus
2R 25286936 2R 25175963..25176026 565..502 230 90.6 Minus
2R 25286936 2R 25175963..25176022 550..491 210 90 Minus
Blast to na_te.dros performed on 2014-11-27 08:04:38 has no hits.

BO05809.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:23 Download gff for BO05809.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 1..1134 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:45 Download gff for BO05809.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..1154 9..1147 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:50 Download gff for BO05809.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 24..1154 17..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:24 Download gff for BO05809.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 16..1154 9..1147 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:32 Download gff for BO05809.complete
Subject Subject Range Query Range Percent Splice Strand
Peb-RA 24..1154 17..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:32 Download gff for BO05809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25175499..25176616 32..1149 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:50 Download gff for BO05809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 21063022..21064139 32..1149 99 <- Minus

BO05809.pep Sequence

Translation from 16 to 1165

> BO05809.pep
MVRQLILVLSLILFCGSSHAVVSELARQSESAIQGLADIKMAPLRYLDVL
FGGNPGGLRGLDGGNSASLSTLQAAKVANILARGDIASSGYSKISAGVGK
GSDLITIIKNTRSYDPYLIPPGIPGYNYPLGWPLRYPLGPYWPNRPPWLP
INSPPIRPGGLFPGGPSPGGPSPGEPSPGEPSPGGPSPGGPSPGGPSPGG
PSPGGPSPGGPSPGGPFPGGSPPSPGGPLGPWQFPWILGGPRPNRPGRPF
PGGILPGHLDGSVVPNSVLNVAGGIFGNGGLFGTGIFGQHGLFGTGFLSG
PSLDPFGIFTPIGNFFGSLGNLFGFSSPSQIIPIFGGKFGPLGRGLQGSI
TLDVGGTVPSVKGILGQLLHPFLGFLGASFLDH

BO05809.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Peb-PB 377 CG2668-PB 1..377 1..377 2062 100 Plus
Peb-PA 377 CG2668-PA 1..377 1..377 2062 100 Plus
CG10625-PD 268 CG10625-PD 115..258 119..266 221 42.7 Plus
CG10625-PA 268 CG10625-PA 115..258 119..266 221 42.7 Plus
CG10625-PE 652 CG10625-PE 499..642 119..266 221 42.7 Plus
CG10625-PD 268 CG10625-PD 84..204 139..251 194 42.6 Plus
CG10625-PA 268 CG10625-PA 84..204 139..251 194 42.6 Plus
CG10625-PD 268 CG10625-PD 164..265 120..227 172 42.2 Plus
CG10625-PA 268 CG10625-PA 164..265 120..227 172 42.2 Plus