Clone BO05813 Report

Search the DGRC for BO05813

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG5508-RA
Protein status:BO05813.pep: Imported from assembly
Sequenced Size:2584

Clone Sequence Records

BO05813.3prime Sequence

730 bp (728 high quality bases) assembled on 2005-12-02

> BO05813.3prime
ATGGTCTAGAAAGCTTGCAGGCGTTACACTGAAGTAGCCCGAGTTGAATT
TTGGTACAATTGCGTCGATCTTCTTCACGATCGAGTTGAGCGACTCACGA
GACATCTCGTAGAGCGTGTTGAGTGAGATCAGGCGCATGCCCTGCTGGTT
GCAAACCTCGATCACAGACCATTTCTCCAACAGCTTCAGGCAGTTGCGCA
CGGAGTCGGTGGATATGCTTTCGGCATAGATGCAGCTGCCGCGCTTGACC
TTGCTGCTCAGATCGTTAATCACAAAGCTTATAAATTCAGACTCCAGCAT
GGAGTTCTTGTGCAGTATTTGCAGGGACTGCGCCACCGTCACATACGTCC
AGGCGAAGGGCGCCAGCACCTCGCAAATGTAGCGCTGCTGCGACGGGGTT
TCGCTGGCGAACAGCAGTTTGGGCTCATCCGCCTCGCCATCGCGCACGTC
TTCGTAGCCGTCCTCGTCCAGGCACTCTGCCAGGACGTTGGCCAAGCGCC
TGCCCTCAGCGCCATTCGGCAAATCGTCATGGAGCTTTTCGGTCAAAACG
CAACCACTAATCAAGAGGTCGTCCAACTGCTGGTACAGCAAATTTTCCAG
CACCTGCGTCGGTTTGTTCAGAATAAATTCGTAGCGATAGATCTGGCAGT
TTTCCAGCGCGGTGTCTATCAGCTTTTTGCGCGACACGGCGGCTTCTTTC
TTATTCTCCGTTTCCGGAAGCAGTGAGTGG

BO05813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5508-PA 2553 CG5508-RA 1839..2550 730..19 3560 100 Minus
CG5508-PC 2361 CG5508-RC 1647..2358 730..19 3560 100 Minus
CG5508-PB 2274 CG5508-RB 1560..2271 730..19 3560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 3176 CG5508-RE 2055..2766 730..19 3560 100 Minus
mino-RB 2687 CG5508-RB 1775..2486 730..19 3560 100 Minus
mino-RC 2903 CG5508-RC 1886..2597 730..19 3560 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27932088..27932399 536..225 1560 100 Minus
3R 32079331 3R 27932461..27932667 225..19 1035 100 Minus
3R 32079331 3R 27931830..27932025 730..535 980 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:57:43 has no hits.

BO05813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:01 Download gff for BO05813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PA 1839..2553 15..730 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:43 Download gff for BO05813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PB 1560..2274 15..730 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:12 Download gff for BO05813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-RC 1886..2600 15..730 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:11 Download gff for BO05813.3prime
Subject Subject Range Query Range Percent Splice Strand
mino-RC 1886..2600 15..730 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:11 Download gff for BO05813.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27931830..27932025 535..730 100 -> Minus
3R 27932090..27932399 225..534 100 -> Minus
3R 27932462..27932670 15..224 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:12 Download gff for BO05813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23757552..23757747 535..730 100 -> Minus
arm_3R 23757812..23758121 225..534 100 -> Minus
arm_3R 23758184..23758392 15..224 99   Minus

BO05813.5prime Sequence

924 bp (858 high quality bases) assembled on 2005-12-02

> BO05813.5prime
GAAGTTATCAGTCGACATGTTGACGACCGTCCTGAACTTTGCCCAGCGCG
TCGCCGAGATTTCTTTGCTCGGCGGCATCGAGATTGCATCAGTTGCCCTT
ATTGTCTACTATATATTCGCCAAGACGAGGGCACCGGTAATCATCGCTAG
CCTGTTTCCCAATCTGAATCTGAGCTACCGGACGAGCTACCTCAGCAAGA
TCAACACCATACGCAGCGATCTTCTGGTCACTTTGCGATCATCCAATGAG
CCCAAGACGCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTT
GGAGCTGACCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACT
GGGGCGTGCTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTC
GAGTACCGACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCA
TGCAATTAAACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTA
AAAATGGTCATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCG
CAGGAGGAGGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCG
TAAGCAGGAGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTC
TGAACAATGGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTG
CCCTGCTTCCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCT
CAAAACAGCCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGC
TGCATCGCAGCCACTTGGACTACATCATGGTCACATGGATACTCACGAAC
AACGATATACGCAGTCCTCTGGTAGCCGCTGGCAACAACTGCAAATTCGG
GTCTTTGGTGGGCTCCTACCTTGG

BO05813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5508-PA 2553 CG5508-RA 1..873 17..889 4365 100 Plus
CG5508-PC 2361 CG5508-RC 40..681 248..889 3210 100 Plus
CG5508-PB 2274 CG5508-RB 1..594 296..889 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 3176 CG5508-RE 216..1120 16..919 4485 99.8 Plus
mino-RA 3546 CG5508-RA 690..1594 16..919 4485 99.8 Plus
mino-RB 2687 CG5508-RB 168..840 248..919 3325 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27930202..27930711 411..919 2485 99.6 Plus
3R 32079331 3R 27929981..27930147 248..414 835 100 Plus
3R 32079331 3R 27929229..27929349 128..248 605 100 Plus
3R 32079331 3R 27925880..27925994 16..130 575 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:56:41 has no hits.

BO05813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:02 Download gff for BO05813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:44 Download gff for BO05813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-PA 1..908 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:45 Download gff for BO05813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 682..1598 7..924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:30 Download gff for BO05813.5prime
Subject Subject Range Query Range Percent Splice Strand
mino-RA 682..1598 7..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:30 Download gff for BO05813.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27929231..27929348 130..247 100 -> Plus
3R 27929981..27930145 248..412 100 -> Plus
3R 27925872..27925993 7..129 97 -> Plus
3R 27930204..27930715 413..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:45 Download gff for BO05813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23751594..23751715 7..129 97 -> Plus
arm_3R 23754953..23755070 130..247 100 -> Plus
arm_3R 23755703..23755867 248..412 100 -> Plus
arm_3R 23755926..23756437 413..924 99   Plus

BO05813.complete Sequence

2584 bp assembled on 2008-11-10

GenBank Submission: KX798301

> BO05813.complete
GAAGTTATCAGTCGACATGTTGACGACCGTCCTGAACTTTGCCCAGCGCG
TCGCCGAGATTTCTTTGCTCGGCGGCATCGAGATTGCATCAGTTGCCCTT
ATTGTCTACTATATATTCGCCAAGACGAGGGCACCGGTAATCATCGCTAG
CCTGTTTCCCAATCTGAATCTGAGCTACCGGACGAGCTACCTCAGCAAGA
TCAACACCATACGCAGCGATCTTCTGGTCACTTTGCGATCATCCAATGAG
CCCAAGACGCAGAATTCGGTGGCTCATGGCATTGGGACGCAGAATATGTT
GGAGCTGACCCCGCATTCGGGTCAGAAGCCTTTTAAGAAGCTATTCGACT
GGGGCGTGCTCTTCCCATATGTTGCCCAGGTGGTGCGCAGCGAGAAGTTC
GAGTACCGACAGGTCACCGAGATCGTGCACAACGATGCTGTACTGAAGCA
TGCAATTAAACAGGCCGCCGAGCAGACGCTAAGGGAGCAGAGATATGCTA
AAAATGGTCATCGTCTGCTCACGCGCAGTGCTAGTGGAGATCAGGAGGCG
CAGGAGGAGGAGGACGAGAAGAGGGGTATATCCTATCAGGCCATTCTGCG
TAAGCAGGAGCAGCGCGCCATTAGCATACTGAAGGACATGGGCTCCACTC
TGAACAATGGCCTTTTGGCCTTCACTTCCTGGATCCTGTACAAGTTGCTG
CCCTGCTTCCTCTCCGGAGTCGTTACGAACACGAAGCAGATCGAGATGCT
CAAAACAGCCACAGAGCGTTCGCCGGGCACTCCGCTGATATTTGTTCCGC
TGCATCGCAGCCACTTGGACTACATCATGGTCACATGGATACTCACGAAC
AACGATATACGCAGTCCTCTGGTAGCCGCTGGCAACAACCTGCAAATTCC
GGTCTTTGGTGGGCTCCTACGTGGTTTGGGTGCTTTCTTCATCAAACGCA
AGATTGATCCTGTGGAGGGCAAGAAGGACGTGCTTTATCGCGCTGCTCTA
CACCTGTATCTGACCCACGCCTTGAAGCAGGGCCACAACGTCGAGTTCTT
CATCGAGGGCGGACGAACGCGCACTGGCAAGCCGTGCATGCCCAAGGGCG
GCATTCTTTCTGTGATTGTGAACGCCTTCATGGACGGCAGCATACCGGAC
GCACTGCTGGTACCCGTTTCCGTAAACTACGAGCGTCTCGTCGACGGAAA
CTTTGTGCGCGAACAAAAGGGCGAGAAGAAGATACCCGAATCATTCGGCA
AGGCCATTTCGGGCATTTGGAAGGCCCTGAAATCAAACTACGGCCTCATG
CGCATCGACTTTAACGAGCCCTACTCCATACGTGAGCTGGTCAATTCGTA
CAACAAGATAGCCCGAGAAGATGGAAACATTGCCAAGGTCTACAAGCCAT
CTGCCAGGGTCCTACAGCACAATCAGTCCACCTCCTCCTTGTACGGCACC
GATGTTGTGTGCGAGGAGCACCGCAATCTCATCGAAAGCATCTCGCGCCA
GGTGGTCTTTGACTGCGCAGCAGCCACCTCTGTGATGTCCACCAATGCGT
TAGCCTTTTTGCTGCTCACCCGCTTTAGGAACGGTGCCGAGGAGCAGATT
CTGTCGGAGGCTCTGGACGACTTGCGAAACTCGTTGTCGGGCTGCAAGGA
CATTGGTTTTTCCGGGGAATCCTCGCAAATTGTGGCATATGCCTGTGACC
TACTCGGCTCAGGTCTTGTGACTCGCTCTCGGGATGAGAACGGGCGTTTG
GTGATTAAGGCTGTGAATTCAGTGGAAAGCTTTATTGAGCTGGCTTACTA
TTCGAACATGCTGACGCCGCACTTTGCCCTCAGCTCGATATTGTTGACCA
CCTTCCACTCACTGCTTCCGGAAACGGAGAATAAGAAAGAAGCCGCCGTG
TCGCGCAAAAAGCTGATAGACACCGCGCTGGAAAACTGCCAGATCTATCG
CTACGAATTTATTCTGAACAAACCGACGCAGGTGCTGGAAAATTTGCTGT
ACCAGCAGTTGGACGACCTCTTGATTAGTGGTTGCGTTTTGACCGAAAAG
CTCCATGACGATTTGCCGAATGGCGCTGAGGGCAGGCGCTTGGCCAACGT
CCTGGCAGAGTGCCTGGACGAGGACGGCTACGAAGACGTGCGCGATGGCG
AGGCGGATGAGCCCAAACTGCTGTTCGCCAGCGAAACCCCGTCGCAGCAG
CGCTACATTTGCGAGGTGCTGGCGCCCTTCGCCTGGACGTATGTGACGGT
GGCGCAGTCCCTGCAAATACTGCACAAGAACTCCATGCTGGAGTCTGAAT
TTATAAGCTTTGTGATTAACGATCTGAGCAGCAAGGTCAAGCGCGGCAGC
TGCATCTATGCCGAAAGCATATCCACCGACTCCGTGCGCAACTGCCTGAA
GCTGTTGGAGAAATGGTCTGTGATCGAGGTTTGCAACCAGCAGGGCATGC
GCCTGATCTCACTCAACACGCTCTACGAGATGTCTCGTGAGTCGCTCAAC
TCGATCGTGAAGAAGATCGACGCAATTGTACCAAAATTCAACTCGGGCTA
CTTCAGTGTAACGCCTGCAAGCTTTCTAGACCAT

BO05813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 2553 CG5508-PE 1..2550 17..2566 12750 100 Plus
mino-RA 2553 CG5508-PA 1..2550 17..2566 12750 100 Plus
mino-RC 2361 CG5508-PC 40..2358 248..2566 11595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
mino-RE 3176 CG5508-RE 216..2766 16..2566 12755 100 Plus
mino-RA 3546 CG5508-RA 690..3240 16..2566 12755 100 Plus
mino-RB 2687 CG5508-RB 168..2486 248..2566 11595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27930202..27931199 411..1408 4990 100 Plus
3R 32079331 3R 27931686..27932025 1711..2050 1700 100 Plus
3R 32079331 3R 27932088..27932399 2049..2360 1560 100 Plus
3R 32079331 3R 27931317..27931626 1405..1714 1550 100 Plus
3R 32079331 3R 27932461..27932667 2360..2566 1035 100 Plus
3R 32079331 3R 27929981..27930147 248..414 835 100 Plus
3R 32079331 3R 27929229..27929349 128..248 605 100 Plus
3R 32079331 3R 27925880..27925994 16..130 575 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:45:16 has no hits.

BO05813.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:39 Download gff for BO05813.complete
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 680..3241 7..2570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:40 Download gff for BO05813.complete
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 696..3240 22..2568 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:06 Download gff for BO05813.complete
Subject Subject Range Query Range Percent Splice Strand
CG5508-RA 694..3238 22..2568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:28 Download gff for BO05813.complete
Subject Subject Range Query Range Percent Splice Strand
mino-RA 696..3240 22..2568 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:28 Download gff for BO05813.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27931320..27931624 1408..1712 100 -> Plus
3R 27931688..27932025 1713..2050 100 -> Plus
3R 27932090..27932399 2051..2360 100 -> Plus
3R 27932462..27932667 2361..2568 99   Plus
3R 27925886..27925993 22..129 100 -> Plus
3R 27929231..27929348 130..247 100 -> Plus
3R 27929981..27930145 248..412 100 -> Plus
3R 27930204..27931198 413..1407 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:40 Download gff for BO05813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23751608..23751715 22..129 100 -> Plus
arm_3R 23754953..23755070 130..247 100 -> Plus
arm_3R 23755703..23755867 248..412 100 -> Plus
arm_3R 23755926..23756920 413..1407 100 -> Plus
arm_3R 23757042..23757346 1408..1712 100 -> Plus
arm_3R 23757410..23757747 1713..2050 100 -> Plus
arm_3R 23757812..23758121 2051..2360 100 -> Plus
arm_3R 23758184..23758389 2361..2568 99   Plus

BO05813.pep Sequence

Translation from 16 to 2584

> BO05813.pep
MLTTVLNFAQRVAEISLLGGIEIASVALIVYYIFAKTRAPVIIASLFPNL
NLSYRTSYLSKINTIRSDLLVTLRSSNEPKTQNSVAHGIGTQNMLELTPH
SGQKPFKKLFDWGVLFPYVAQVVRSEKFEYRQVTEIVHNDAVLKHAIKQA
AEQTLREQRYAKNGHRLLTRSASGDQEAQEEEDEKRGISYQAILRKQEQR
AISILKDMGSTLNNGLLAFTSWILYKLLPCFLSGVVTNTKQIEMLKTATE
RSPGTPLIFVPLHRSHLDYIMVTWILTNNDIRSPLVAAGNNLQIPVFGGL
LRGLGAFFIKRKIDPVEGKKDVLYRAALHLYLTHALKQGHNVEFFIEGGR
TRTGKPCMPKGGILSVIVNAFMDGSIPDALLVPVSVNYERLVDGNFVREQ
KGEKKIPESFGKAISGIWKALKSNYGLMRIDFNEPYSIRELVNSYNKIAR
EDGNIAKVYKPSARVLQHNQSTSSLYGTDVVCEEHRNLIESISRQVVFDC
AAATSVMSTNALAFLLLTRFRNGAEEQILSEALDDLRNSLSGCKDIGFSG
ESSQIVAYACDLLGSGLVTRSRDENGRLVIKAVNSVESFIELAYYSNMLT
PHFALSSILLTTFHSLLPETENKKEAAVSRKKLIDTALENCQIYRYEFIL
NKPTQVLENLLYQQLDDLLISGCVLTEKLHDDLPNGAEGRRLANVLAECL
DEDGYEDVRDGEADEPKLLFASETPSQQRYICEVLAPFAWTYVTVAQSLQ
ILHKNSMLESEFISFVINDLSSKVKRGSCIYAESISTDSVRNCLKLLEKW
SVIEVCNQQGMRLISLNTLYEMSRESLNSIVKKIDAIVPKFNSGYFSVTP
ASFLDH

BO05813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
mino-PE 850 CG5508-PE 1..850 1..850 4315 100 Plus
mino-PA 850 CG5508-PA 1..850 1..850 4315 100 Plus
mino-PC 786 CG5508-PC 14..786 78..850 3950 100 Plus
mino-PB 757 CG5508-PB 1..757 94..850 3865 100 Plus
Dhap-at-PB 724 CG4625-PB 95..412 194..497 297 27.6 Plus