Clone Sequence Records
BO05817.3prime Sequence
742 bp (741 high quality bases) assembled on 2005-12-02
> BO05817.3prime
ATGGTCTAGAAAGCTTGCCAGATACAACGACGCGGCAAAGACAATGTCAC
GCTTGAGCAGCCTTATTCCTTCGGAGAACTTGTTCTCCAGGTCCGTGTTG
CCAATGGTCTTCGAGGCCTGGCACATCTGGCGCAGAAGCTCCTCCAGTCG
CCTCATGCAGCGGATGATGGAGCCTTCGAAGATGTCGGTCATCTTGCAGA
CGGCAAGGAAACTGGAGCCCTTGCACCACGCCAGCACCACGTCCATTAGG
AAGGGCTTAAACTTGTCCACATACGTATCGGCGTCCAGATCGAGTTTGCA
TTCCGTGGACACCTTGGCAATGCGCCGCGCCAGATCCTGCATCGAACGTA
GTGGGCCCGATAGCTCCGTGGCGCTTTTCACCGACTCGCTGGACTTCTCG
TCGCAAACAAAGCAGGAGAGTAGAGCCACGGCTTGCGGAGCGGTGAGGTC
GTTAAATACTCCGTTGAAGATCATCTCGGTCATGAGAAGCTCATCCGCCG
AGCTCAGTTCGCAGGCAACACGACCCTTGAACTCGATAACGTCGCCAGGC
TTGCAGTAGCCCATGCGCCGAAGCACACGCTTGCGATGCTTCAGTTCATC
CATTTGCAGCAGACTGCGGGCAGCCTTTAGCTCGGCCTTTAGGTCTTGCA
GCTGCTTTTGTAGCGTCACCTTGTCCTGGTACCGCCGGTGGATGCGCTCC
AATTCCGGTGACTTGTGCAGCGGATGCTCCTCCAATCGCTTT
BO05817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4152-PA | 3168 | l(2)35Df-RA | 2442..3165 | 742..19 | 3620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Df-RA | 3585 | CG4152-RA | 2536..3259 | 742..19 | 3620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15754851..15755574 | 742..19 | 3620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:37:51 has no hits.
BO05817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:07 Download gff for
BO05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4152-PA | 2442..3168 | 15..742 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:50 Download gff for
BO05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4152-PA | 2442..3168 | 15..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:38 Download gff for
BO05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 2536..3270 | 6..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:29 Download gff for
BO05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 2536..3270 | 6..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:29 Download gff for
BO05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15754851..15755585 | 6..742 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:38 Download gff for
BO05817.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15754851..15755585 | 6..742 | 99 | | Minus |
BO05817.5prime Sequence
899 bp (851 high quality bases) assembled on 2005-12-02
> BO05817.5prime
GAAGTTATCAGTCGACATGGATATAGAAGAGCTGTTCGACTGTTTTGATG
AAGTGACGCCGTCGGTGCCGCCACCAGCACTTAACCAGGAGGAGAAGCCA
TCGGGAAGCAGTGCCTCCAAGAAAGGAAATAAGCGCCAAGCGGATGGCAC
CACTGCATCGAAAGAAGCTACATCCTCCAAAGGAGCGGAGGGCGATGACA
AAGGAGACGTCACTGAGGAGCCCACCAAGCGTCTGAAGCAGGAGGCGTCA
ACGGTTGCGGTGGATGACGATAATAATGCAGATGACGAACCCACTCGTAC
CCTCGACATAGACGATTCCGCGACTCTGGAGGCCCTGCGGACCAGGATTG
TCACGCACTTGTTGGACGCTCCCAAGTCATGCACCCACGAGGTTGCCGCC
CATCCCGACCAGGAGTACATACCCCTAAAGCCGTTCAGCGGCGTGCCTGC
AAAGGAGTATCCCTTCGTCCTCGATCCGTTCCAGCGCCAGGCGATTCTGT
GCATTGACAACAGCCAGAGTGTGCTGGTTTCCGCCCACACGTCAGCCGGT
AAGACGGTGGTGGCGGAGTATGCCATTGCAAAATCATTGGCCGCCAAGCA
GCGGGTTATATACACCACTCCCATCAAGGCTCTGTCCAACCAGAAGTTTC
GCGAATTCACCGACGAGTTTAAGGACGTGGGCTTGGTCACCGGTGATGTG
ACCATAAATCCATCGGCCTCCTGTTTGATCATGACCACCGAGATTCTGCG
AAACATGTTGTACCGCGGTAGCGAGATCATGCGCGAGGTGGGCTGGGTGG
TCTTCGATGAGATTCACTACATGCGCGACAAGGAGCGCGGCGTCGTCTGG
GAAGAACGCTCATCCTTCTGCCGGGACACGTGCGATATGTCTTTCTTTC
BO05817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4152-PA | 3168 | l(2)35Df-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Df-RA | 3585 | CG4152-RA | 94..978 | 16..899 | 4355 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15752356..15753240 | 16..899 | 4330 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:02:31 has no hits.
BO05817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:08 Download gff for
BO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4152-PA | 1..884 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:52 Download gff for
BO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4152-PA | 1..884 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:54 Download gff for
BO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 91..978 | 10..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:13 Download gff for
BO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 91..978 | 10..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:13 Download gff for
BO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15752353..15753240 | 10..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:54 Download gff for
BO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15752353..15753240 | 10..899 | 99 | | Plus |
BO05817.complete Sequence
3199 bp assembled on 2008-08-14
GenBank Submission: FJ630154
> BO05817.complete
GAAGTTATCAGTCGACATGGATATAGAAGAGCTGTTCGACTGTTTTGATG
AAGTGACGCCGTCGGTGCCGCCACCAGCACTTAACCAGGAGGAGAAGCCA
TCGGGAAGCAGTGCCTCCAAGAAAGGAAATAAGCGCCAAGCGGATGGCAC
CACTGCATCGAAAGAAGCTACATCCTCCAAAGGAGCGGAGGGCGATGACA
AAGGAGACGTCACTGAGGAGCCCACCAAGCGTCTGAAGCAGGAGGCGTCA
ACGGTTGCGGTGGATGACGATAATAATGCAGATGACGAACCCACTCGTAC
CCTCGACATAGACGATTCCGCGACTCTGGAGGCCCTGCGGACCAGGATTG
TCACGCACTTGTTGGACGCTCCCAAGTCATGCACCCACGAGGTTGCCGCC
CATCCCGACCAGGAGTACATACCCCTAAAGCCGTTCAGCGGCGTGCCTGC
AAAGGAGTATCCCTTCGTCCTCGATCCGTTCCAGCGCCAGGCGATTCTGT
GCATTGACAACAGCCAGAGTGTGCTGGTTTCCGCCCACACGTCAGCCGGT
AAGACGGTGGTGGCGGAGTATGCCATTGCAAAATCATTGGCCGCCAAGCA
GCGGGTTATATACACCACTCCCATCAAGGCTCTGTCCAACCAGAAGTTTC
GCGAATTCACCGACGAGTTTAAGGACGTGGGCTTGGTCACCGGTGATGTG
ACCATAAATCCATCGGCCTCCTGTTTGATCATGACCACCGAGATTCTGCG
AAACATGTTGTACCGCGGTAGCGAGATCATGCGCGAGGTGGGCTGGGTGG
TCTTCGATGAGATTCACTACATGCGCGACAAGGAGCGCGGCGTCGTCTGG
GAAGAAACGCTCATCCTTCTGCCGGACAACGTGCGATATGTCTTTCTTTC
GGCCACCATTCCCAATGCTCGACAATTCGCCGAGTGGGTCTGCCACCTGC
ACAAGCAGCCATGTCACGTGGTCTACACCGATTATCGTCCCACTCCTCTG
CAGCACTACATCTTTCCGGCCGGTGGCGATGGCATTCATCTTATCGTCGA
TGAAAAGGGGCAGTTCAAGGAGGACAACTTCACCACAGCAATGGCAGTGC
TGGCCAATGCAGGTGAGGCCGGCAAGGGAGATCAGAAAGGACGCCATGGG
GGCATTAAGGGAACCAATGCCGGACAAACGAATATCTTTAAAATAGTCAA
GATGATAATGGAGCGCAATTTTGCACCGGTCATCATTTTTTCGTTCAGCA
AAAAGGACTGCGAGATCTACGCCATGCAGATGGCCAAGTTGGACTTCAAC
ACTCCCGACGAAAAGAAACTAGTGGACGAAGTGTTCAACAATGCCATGGA
CGTGCTCACCGAGGAGGATCGTCGCCTGCCACAGGTGGAAAACGTGTTGC
CGTTGTTGCGTCGCGGCATTGGCATCCATCACGGCGGTCTGTTGCCCATT
CTGAAGGAGACCATTGAGATTCTGTTCGGCGAAGGTCTGATCAAGGCCTT
ATTCGCCACCGAAACCTTTGCAATGGGCCTTAATATGCCGGCTCGAACTG
TGCTGTTTACGGCTCCGCGTAAGTTCGATGGCAAGAAATTCCGATGGATC
AGCTCTGGCGAGTACATCCAGATGGCGGGACGTGCCGGTCGACGTGGATT
GGATGACAAGGGCATCGTCATTCTCATGATCGATGAAAAAGTTTCGCCGG
CTGTTGGTCGTGACATTGTTCAGGGCAAGGCAGATCCCATCAATTCGGCC
TTCCATCTTACATACAATATGGTGCTGAATCTGCTTCGTGTGGAGGAAAT
CAATCCGGAATACATGCTGGAACGCAGTTTCTATCAGTTCCAAAATCAAG
CTGCACTGCCCGGCCTGCATGACCAGGTGGAGCAGAAGACGCTGGAGCTG
AATAAGCTGACTATCAAGGACGAGCACAACATTGCCTCCTACCATCACAT
ACGCTCTCAGCTGGATCAACACGGCAAGCAGTTCCGTCAATGGATAACGA
AGCCGCAATACCTATTGCCCTTCCTACAGCCTGGTAGGTTGGTCAAGGTG
GCCGCCGGCTCACAGGAGTACGATTGGGGCATTGTGCTGAACTTCAAGAA
ACAAGACCAAAGCCGCAAGAACCCTTTAAAGGCGGAGCCCAGCGTCACGA
TTGATGTTTTGCTGCACGTTAGTGAAGCGGCCGCCAAAACCGGCGACACG
GAGCCATGCAAACCGAACGAACGTGGATGCATGGAGGTGGTGCCCGTGGC
CCACACCCTCATCACCCAGATCAGCTCAATCCGCGTGTACTTCCCCAACG
ATCTACGCAGTGCTGACAATCGGCGAGCCGTGCTCAAGACTATCCAGGAG
GCCAAGAAACGATTCCCCCTGGGACCACCGGTCCTCAATCCCATCGATGA
CATGAACATCAAGGATCGAGAGTTCCGCGATATTGTCAATACCATTTCCC
AATTTGAAAAGCGATTGGAGGAGCATCCGCTGCACAAGTCACCGGAATTG
GAGCGCATCCACCGGCGGTACCAGGACAAGGTGACGCTACAAAAGCAGCT
GCAAGACCTAAAGGCCGAGCTAAAGGCTGCCCGCAGTCTGCTGCAAATGG
ATGAACTGAAGCATCGCAAGCGTGTGCTTCGGCGCATGGGCTACTGCAAG
CCTGGCGACGTTATCGAGTTCAAGGGTCGTGTTGCCTGCGAACTGAGCTC
GGCGGATGAGCTTCTCATGACCGAGATGATCTTCAACGGAGTATTTAACG
ACCTCACCGCTCCGCAAGCCGTGGCTCTACTCTCCTGCTTTGTTTGCGAC
GAGAAGTCCAGCGAGTCGGTGAAAAGCGCCACGGAGCTATCGGGCCCACT
ACGTTCGATGCAGGATCTGGCGCGGCGCATTGCCAAGGTGTCCACGGAAT
GCAAACTCGATCTGGACGCCGATACGTATGTGGACAAGTTTAAGCCCTTC
CTAATGGACGTGGTGCTGGCGTGGTGCAAGGGCTCCAGTTTCCTTGCCGT
CTGCAAGATGACCGACATCTTCGAAGGCTCCATCATCCGCTGCATGAGGC
GACTGGAGGAGCTTCTGCGCCAGATGTGCCAGGCCTCGAAGACCATTGGC
AACACGGACCTGGAGAACAAGTTCTCCGAAGGAATAAGGCTGCTCAAGCG
TGACATTGTCTTTGCCGCGTCGTTGTATCTGGCAAGCTTTCTAGACCAT
BO05817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Df-RA | 3168 | CG4152-PA | 1..3165 | 17..3181 | 15825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Df-RA | 3585 | CG4152-RA | 94..3259 | 16..3181 | 15830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15753501..15755574 | 1108..3181 | 10370 | 100 | Plus |
| 2L | 23513712 | 2L | 15752356..15753454 | 16..1114 | 5495 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4477..4626 | 1311..1462 | 141 | 60.9 | Plus |
BO05817.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:37 Download gff for
BO05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 101..3280 | 10..3194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:38 Download gff for
BO05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 95..3259 | 17..3183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:52 Download gff for
BO05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 105..3269 | 17..3183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:02 Download gff for
BO05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Df-RA | 95..3259 | 17..3183 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:02 Download gff for
BO05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15752357..15753452 | 17..1112 | 100 | -> | Plus |
| 2L | 15753506..15755574 | 1113..3183 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:38 Download gff for
BO05817.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15752357..15753452 | 17..1112 | 100 | -> | Plus |
| arm_2L | 15753506..15755574 | 1113..3183 | 99 | | Plus |
BO05817.pep Sequence
Translation from 16 to 3199
> BO05817.pep
MDIEELFDCFDEVTPSVPPPALNQEEKPSGSSASKKGNKRQADGTTASKE
ATSSKGAEGDDKGDVTEEPTKRLKQEASTVAVDDDNNADDEPTRTLDIDD
SATLEALRTRIVTHLLDAPKSCTHEVAAHPDQEYIPLKPFSGVPAKEYPF
VLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYT
TPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYR
GSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPN
ARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQF
KEDNFTTAMAVLANAGEAGKGDQKGRHGGIKGTNAGQTNIFKIVKMIMER
NFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEE
DRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATET
FAMGLNMPARTVLFTAPRKFDGKKFRWISSGEYIQMAGRAGRRGLDDKGI
VILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYM
LERSFYQFQNQAALPGLHDQVEQKTLELNKLTIKDEHNIASYHHIRSQLD
QHGKQFRQWITKPQYLLPFLQPGRLVKVAAGSQEYDWGIVLNFKKQDQSR
KNPLKAEPSVTIDVLLHVSEAAAKTGDTEPCKPNERGCMEVVPVAHTLIT
QISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPLGPPVLNPIDDMNIKD
REFRDIVNTISQFEKRLEEHPLHKSPELERIHRRYQDKVTLQKQLQDLKA
ELKAARSLLQMDELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELL
MTEMIFNGVFNDLTAPQAVALLSCFVCDEKSSESVKSATELSGPLRSMQD
LARRIAKVSTECKLDLDADTYVDKFKPFLMDVVLAWCKGSSFLAVCKMTD
IFEGSIIRCMRRLEELLRQMCQASKTIGNTDLENKFSEGIRLLKRDIVFA
ASLYLASFLDH
BO05817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Df-PA | 1055 | CG4152-PA | 1..1055 | 1..1055 | 5456 | 100 | Plus |
| tst-PB | 1197 | CG10210-PB | 255..1194 | 144..1054 | 1345 | 35 | Plus |
| tst-PA | 1197 | CG10210-PA | 255..1194 | 144..1054 | 1345 | 35 | Plus |
| CG5205-PA | 2183 | CG5205-PA | 1308..1720 | 130..558 | 299 | 27.2 | Plus |
| mus301-PA | 1051 | CG7972-PA | 277..664 | 163..565 | 277 | 25.7 | Plus |
