Clone Sequence Records
BO05820.3prime Sequence
953 bp (865 high quality bases) assembled on 2005-12-02
> BO05820.3prime
ATGGTCTAGAAAGCTTGCCCAAACCTCGCACTTTTGGACCGGATTCATGG
GTGATCCCTCTGGACAATGGAAGTCCTTGGCGAAGTCCTTCATGTTGCTG
AGCGACCCGAGGACTCGGAACTCGGATGGAGAATGCACGCCGGTAGTAAT
ACGCATCTTGAGAGATTCTTTTCGGTACTTAGCACACCAAGTCTGTCCGG
CTGCCACCCAGAACATCTGCTCCGGGGTGTAGTCCAATCCCGGAAGCTTT
GCTTCCGGTCCGTGCTTCTCAGCCCATCTGCGGTAGGCGATGTATGACTC
CTTGACGCCACCATTGTCGGCGATATTCTCCCCCTGGGTGTTGATGCCAT
TCAAGTTCAATCCCGTGGCCCTTTCGGTGTAGTTGCCGTACTGCTCAATG
ATGCACTTCGCCTTGGCCAGATAGGCCTTCTGGGTGTCCGGGTGCCACCA
GTCCCGCAGGTTGCCCTTCACGTCGAACTGGCGACCCTGGTCGTCGAAAC
CATGGGTGATCTCGTGACCAATCACGTAGCCAATGGCGCCAAAGTTCATG
TACTTCGGACGTTGGGCGTTGAAGAAGTGCCCCTGCAGGATGCCGGCCGG
GAATTGAATACTGTTCTCTAAGGACGAGTAGAACGCGTTCACGATCGCCG
GACGAGCGTGGCGAACCCAGTCCGTCTTGTTGACCGGCAAACGAAGCTTG
TTGAACGAGTAATCCGTGCCAAATATGTTCATGCCCAGGAACGACTCGAA
GTACTTGTCGGGATCGATGTCGAGCTTGGCGTAGTAGGCGGCCAGCTTCT
CGTTGTCGAGCATCTCGTCCGGATAGCCGATGTGGGTGGCCATGCTGTGC
AGCTTTAGCTTGGCCTCCTTTTCTCGTCTGGCGTCCATCCAGTTGACCTC
GTCCAGGATGTCGTTGAACACGTTGCGGATTTCGTTGACCATCTCCAGGG
CGT
BO05820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9761-PA | 2292 | Nep2-RA | 1438..2289 | 870..19 | 4260 | 100 | Minus |
CG9761-PA | 2292 | Nep2-RA | 1355..1429 | 953..879 | 375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 3103 | CG9761-RC | 1671..2605 | 953..19 | 4615 | 99.7 | Minus |
Nep2-RB | 2796 | CG9761-RB | 1704..2638 | 953..19 | 4615 | 99.7 | Minus |
Nep2-RA | 2763 | CG9761-RA | 1671..2605 | 953..19 | 4615 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4720981..4721328 | 606..953 | 1635 | 98 | Plus |
3R | 32079331 | 3R | 4720465..4720715 | 355..605 | 1255 | 100 | Plus |
3R | 32079331 | 3R | 4720224..4720410 | 168..354 | 935 | 100 | Plus |
3R | 32079331 | 3R | 4719956..4720106 | 19..169 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:48:26 has no hits.
BO05820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:11 Download gff for
BO05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-PA | 1355..2292 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:56 Download gff for
BO05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9761-PA | 1355..2292 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:32 Download gff for
BO05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 1671..2605 | 19..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:42:20 Download gff for
BO05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 1671..2605 | 19..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:42:20 Download gff for
BO05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4719956..4720104 | 19..167 | 100 | <- | Plus |
3R | 4720224..4720410 | 168..354 | 100 | <- | Plus |
3R | 4720465..4720715 | 355..605 | 100 | <- | Plus |
3R | 4720981..4721328 | 606..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:32 Download gff for
BO05820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 545678..545826 | 19..167 | 100 | <- | Plus |
arm_3R | 545946..546132 | 168..354 | 100 | <- | Plus |
arm_3R | 546187..546437 | 355..605 | 100 | <- | Plus |
arm_3R | 546703..547050 | 606..953 | 99 | | Plus |
BO05820.5prime Sequence
865 bp (861 high quality bases) assembled on 2005-12-02
> BO05820.5prime
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAG
GATTCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACATC
GCGGTTCTTTTCGGA
BO05820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9761-PA | 2292 | Nep2-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 3103 | CG9761-RC | 315..1165 | 15..865 | 4255 | 100 | Plus |
Nep2-RB | 2796 | CG9761-RB | 315..1165 | 15..865 | 4255 | 100 | Plus |
Nep2-RA | 2763 | CG9761-RA | 315..1165 | 15..865 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4723796..4724301 | 539..34 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 4723515..4723729 | 754..540 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 4723270..4723380 | 865..755 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:55:30 has no hits.
BO05820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:12 Download gff for
BO05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:58 Download gff for
BO05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9761-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:20 Download gff for
BO05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 307..1164 | 7..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:35 Download gff for
BO05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 307..1164 | 7..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:35 Download gff for
BO05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4723271..4723380 | 755..864 | 100 | <- | Minus |
3R | 4723515..4723729 | 540..754 | 100 | <- | Minus |
3R | 4723796..4724301 | 34..539 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:20 Download gff for
BO05820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 548993..549102 | 755..864 | 100 | <- | Minus |
arm_3R | 549237..549451 | 540..754 | 100 | <- | Minus |
arm_3R | 549518..550023 | 34..539 | 100 | <- | Minus |
BO05820.complete Sequence
2323 bp assembled on 2008-08-14
GenBank Submission: FJ630156
> BO05820.complete
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAG
GATTCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACATC
GCGGTTCTTTTCGGAGCAAATAGGGACTTGGCCAAGACGGAGCTGCTGTT
ATCTTTGGAGTTCGAGATGGCGCTGGCCAATATCTCCTGGCCCAACGAGA
AGCGACGCAACTCCTCTGAGCTGTACAATCTAAGAACTCCAGCGCAGCTC
CAGGCCGCCTACCCCTACGTGCAGTGGGTGGACTACATGAACGCCCTGCT
GCCGGAGGGACTGAACGTGGCCGAGGACGAGATGATCAACCTGTCGGTGC
CCAGCTTCTTCGAGGACCTTGGCAAGCTGCTGGCCAAGACGCCGAAGCGT
GTCATCGCCAACTATATGTTCTGGCGTATCCACGGCTTCTCCGTGGGATT
TCTGAGTGAGGAGTTCCGCAAGCGACAGCTGCAGTACGCCACAGCCCTTT
CGGGGCGCCAGGAACAGGAGGCTAGATGGAAGGAGTGCGTCGACATCGCC
ACCAGCAGTCTTGGCATTTCCGTGGGATCGCTCTACGTGGGCAAGCACTT
CCACAAGGATTCGAAGGCCAACGCCCTGGAGATGGTCAACGAAATCCGCA
ACGTGTTCAACGACATCCTGGACGAGGTCAACTGGATGGACGCCAAGACG
AAGAAGGAGGCCAAGCTAAAGCTGCACAGCATGGCCACCCACATCGGCTA
TCCGGACGAGATGCTCGACAACGAGAAGCTGGCCGCCTACTACGCCAAGC
TCGACATCGATCCCGACAAGTACTTCGAGTCGTTCCTGGGCATGAACATA
TTTGGCACGGATTACTCGTTCAACAAGCTTCGTTTGCCGGTCAACAAGAC
GGACTGGGTTCGCCACGCTCGTCCGGCGATCGTGAACGCGTTCTACTCGT
CCTTAGAGAACAGTATTCAATTCCCGGCCGGCATCCTGCAGGGGCACTTC
TTCAACGCCCAACGTCCGAAGTACATGAACTTTGGCGCCATTGGCTACGT
GATTGGTCACGAGATCACCCATGGTTTCGACGACCAGGGTCGCCAGTTCG
ACGTGAAGGGCAACCTGCGGGACTGGTGGCACCCGGACACCCAGAAGGCC
TATCTGGCCAAGGCGAAGTGCATCATTGAGCAGTACGGCAACTACACCGA
AAGGGCCACGGGATTGAACTTGAATGGCATCAACACCCAGGGGGAGAATA
TCGCCGACAATGGTGGCGTCAAGGAGTCATACATCGCCTACCGCAGATGG
GCTGAGAAGCACGGACCGGAAGCAAAGCTTCCGGGATTGGACTACACCCC
GGAGCAGATGTTCTGGGTGGCAGCCGGACAGACTTGGTGTGCTAAGTACC
GAAAAGAATCTCTCAAGATGCGTATTACTACCGGCGTGCATTCTCCATCC
GAGTTCCGAGTCCTCGGGTCGCTCAGCAACATGAAGGACTTCGCCAAGGA
CTTCCATTGTCCAGAGGGATCACCCATGAATCCGGTCCAAAAGTGCGAGG
TTTGGGCAAGCTTTCTAGACCAT
BO05820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 2292 | CG9761-PC | 1..2289 | 17..2305 | 11445 | 100 | Plus |
Nep2-RA | 2292 | CG9761-PA | 1..2289 | 17..2305 | 11445 | 100 | Plus |
Nep2-RB | 2325 | CG9761-PB | 1..1292 | 17..1308 | 6460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 3103 | CG9761-RC | 315..2605 | 15..2305 | 11455 | 100 | Plus |
Nep2-RA | 2763 | CG9761-RA | 315..2605 | 15..2305 | 11455 | 100 | Plus |
Nep2-RB | 2796 | CG9761-RB | 315..1608 | 15..1308 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4723796..4724301 | 539..34 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 4720981..4721393 | 1718..1306 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 4722774..4723150 | 1308..932 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 4720465..4720715 | 1969..1719 | 1255 | 100 | Minus |
3R | 32079331 | 3R | 4723515..4723729 | 754..540 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 4720224..4720410 | 2156..1970 | 935 | 100 | Minus |
3R | 32079331 | 3R | 4723204..4723380 | 931..755 | 885 | 100 | Minus |
3R | 32079331 | 3R | 4719956..4720106 | 2305..2155 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:32:51 has no hits.
BO05820.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:21 Download gff for
BO05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 302..2600 | 7..2305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:35 Download gff for
BO05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 317..2605 | 17..2307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:42 Download gff for
BO05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 312..2600 | 17..2307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:36 Download gff for
BO05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 317..2605 | 17..2307 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:36 Download gff for
BO05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4719954..4720104 | 2157..2307 | 98 | <- | Minus |
3R | 4720224..4720410 | 1970..2156 | 100 | <- | Minus |
3R | 4720465..4720715 | 1719..1969 | 100 | <- | Minus |
3R | 4720981..4721390 | 1309..1718 | 100 | <- | Minus |
3R | 4722774..4723150 | 932..1308 | 100 | <- | Minus |
3R | 4723204..4723380 | 755..931 | 100 | <- | Minus |
3R | 4723515..4723729 | 540..754 | 100 | <- | Minus |
3R | 4723796..4724301 | 34..539 | 100 | <- | Minus |
3R | 4731546..4731562 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:35 Download gff for
BO05820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 548926..549102 | 755..931 | 100 | <- | Minus |
arm_3R | 546703..547112 | 1309..1718 | 100 | <- | Minus |
arm_3R | 548496..548872 | 932..1308 | 100 | <- | Minus |
arm_3R | 545676..545826 | 2157..2307 | 98 | <- | Minus |
arm_3R | 545946..546132 | 1970..2156 | 100 | <- | Minus |
arm_3R | 546187..546437 | 1719..1969 | 100 | <- | Minus |
arm_3R | 549237..549451 | 540..754 | 100 | <- | Minus |
arm_3R | 549518..550023 | 34..539 | 100 | <- | Minus |
arm_3R | 557268..557284 | 17..33 | 100 | | Minus |
BO05820.pep Sequence
Translation from 16 to 2323
> BO05820.pep
MQTVIQNPNWWRRRNKLEKSLLVSLGIMFVVLATGFGLWIGKVLRTSPPS
NPQATALHGDSTTINQVPTGTASKGKSGDSGDVCLTQECIHTASTVLRKM
KPEVEPCDNFYEFACGTYLEEENIPDDKVSISTFSVISDKLQEQLKDIIT
AERPETEPKHFRLPNLLYKACMNKTLIETLGPEPITRVAERLGGWPLIKG
DSWNADDSWTWQEQVKKFRTAGFSMDYIIDFSIGVDLQNSTKRLIDLDQS
SLALSREYLVKGFNETLVTAYYKYMVDIAVLFGANRDLAKTELLLSLEFE
MALANISWPNEKRRNSSELYNLRTPAQLQAAYPYVQWVDYMNALLPEGLN
VAEDEMINLSVPSFFEDLGKLLAKTPKRVIANYMFWRIHGFSVGFLSEEF
RKRQLQYATALSGRQEQEARWKECVDIATSSLGISVGSLYVGKHFHKDSK
ANALEMVNEIRNVFNDILDEVNWMDAKTKKEAKLKLHSMATHIGYPDEML
DNEKLAAYYAKLDIDPDKYFESFLGMNIFGTDYSFNKLRLPVNKTDWVRH
ARPAIVNAFYSSLENSIQFPAGILQGHFFNAQRPKYMNFGAIGYVIGHEI
THGFDDQGRQFDVKGNLRDWWHPDTQKAYLAKAKCIIEQYGNYTERATGL
NLNGINTQGENIADNGGVKESYIAYRRWAEKHGPEAKLPGLDYTPEQMFW
VAAGQTWCAKYRKESLKMRITTGVHSPSEFRVLGSLSNMKDFAKDFHCPE
GSPMNPVQKCEVWASFLDH
BO05820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-PC | 763 | CG9761-PC | 1..763 | 1..763 | 4059 | 100 | Plus |
Nep2-PA | 763 | CG9761-PA | 1..763 | 1..763 | 4059 | 100 | Plus |
Nep2-PB | 774 | CG9761-PB | 1..774 | 1..763 | 4037 | 98.6 | Plus |
Nep1-PD | 849 | CG5905-PD | 102..849 | 11..763 | 1357 | 37 | Plus |
Nep1-PC | 849 | CG5905-PC | 102..849 | 11..763 | 1357 | 37 | Plus |