Clone BO05820 Report

Search the DGRC for BO05820

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptNep2-RA
Protein status:BO05820.pep: Imported from assembly
Sequenced Size:2323

Clone Sequence Records

BO05820.3prime Sequence

953 bp (865 high quality bases) assembled on 2005-12-02

> BO05820.3prime
ATGGTCTAGAAAGCTTGCCCAAACCTCGCACTTTTGGACCGGATTCATGG
GTGATCCCTCTGGACAATGGAAGTCCTTGGCGAAGTCCTTCATGTTGCTG
AGCGACCCGAGGACTCGGAACTCGGATGGAGAATGCACGCCGGTAGTAAT
ACGCATCTTGAGAGATTCTTTTCGGTACTTAGCACACCAAGTCTGTCCGG
CTGCCACCCAGAACATCTGCTCCGGGGTGTAGTCCAATCCCGGAAGCTTT
GCTTCCGGTCCGTGCTTCTCAGCCCATCTGCGGTAGGCGATGTATGACTC
CTTGACGCCACCATTGTCGGCGATATTCTCCCCCTGGGTGTTGATGCCAT
TCAAGTTCAATCCCGTGGCCCTTTCGGTGTAGTTGCCGTACTGCTCAATG
ATGCACTTCGCCTTGGCCAGATAGGCCTTCTGGGTGTCCGGGTGCCACCA
GTCCCGCAGGTTGCCCTTCACGTCGAACTGGCGACCCTGGTCGTCGAAAC
CATGGGTGATCTCGTGACCAATCACGTAGCCAATGGCGCCAAAGTTCATG
TACTTCGGACGTTGGGCGTTGAAGAAGTGCCCCTGCAGGATGCCGGCCGG
GAATTGAATACTGTTCTCTAAGGACGAGTAGAACGCGTTCACGATCGCCG
GACGAGCGTGGCGAACCCAGTCCGTCTTGTTGACCGGCAAACGAAGCTTG
TTGAACGAGTAATCCGTGCCAAATATGTTCATGCCCAGGAACGACTCGAA
GTACTTGTCGGGATCGATGTCGAGCTTGGCGTAGTAGGCGGCCAGCTTCT
CGTTGTCGAGCATCTCGTCCGGATAGCCGATGTGGGTGGCCATGCTGTGC
AGCTTTAGCTTGGCCTCCTTTTCTCGTCTGGCGTCCATCCAGTTGACCTC
GTCCAGGATGTCGTTGAACACGTTGCGGATTTCGTTGACCATCTCCAGGG
CGT

BO05820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9761-PA 2292 Nep2-RA 1438..2289 870..19 4260 100 Minus
CG9761-PA 2292 Nep2-RA 1355..1429 953..879 375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 3103 CG9761-RC 1671..2605 953..19 4615 99.7 Minus
Nep2-RB 2796 CG9761-RB 1704..2638 953..19 4615 99.7 Minus
Nep2-RA 2763 CG9761-RA 1671..2605 953..19 4615 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4720981..4721328 606..953 1635 98 Plus
3R 32079331 3R 4720465..4720715 355..605 1255 100 Plus
3R 32079331 3R 4720224..4720410 168..354 935 100 Plus
3R 32079331 3R 4719956..4720106 19..169 755 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:48:26 has no hits.

BO05820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:11 Download gff for BO05820.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-PA 1355..2292 18..953 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:56 Download gff for BO05820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9761-PA 1355..2292 18..953 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:32 Download gff for BO05820.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 1671..2605 19..953 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:42:20 Download gff for BO05820.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 1671..2605 19..953 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:42:20 Download gff for BO05820.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4719956..4720104 19..167 100 <- Plus
3R 4720224..4720410 168..354 100 <- Plus
3R 4720465..4720715 355..605 100 <- Plus
3R 4720981..4721328 606..953 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:32 Download gff for BO05820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 545678..545826 19..167 100 <- Plus
arm_3R 545946..546132 168..354 100 <- Plus
arm_3R 546187..546437 355..605 100 <- Plus
arm_3R 546703..547050 606..953 99   Plus

BO05820.5prime Sequence

865 bp (861 high quality bases) assembled on 2005-12-02

> BO05820.5prime
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAG
GATTCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACATC
GCGGTTCTTTTCGGA

BO05820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9761-PA 2292 Nep2-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 3103 CG9761-RC 315..1165 15..865 4255 100 Plus
Nep2-RB 2796 CG9761-RB 315..1165 15..865 4255 100 Plus
Nep2-RA 2763 CG9761-RA 315..1165 15..865 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4723796..4724301 539..34 2530 100 Minus
3R 32079331 3R 4723515..4723729 754..540 1075 100 Minus
3R 32079331 3R 4723270..4723380 865..755 555 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:55:30 has no hits.

BO05820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:12 Download gff for BO05820.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:57:58 Download gff for BO05820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9761-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:20 Download gff for BO05820.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 307..1164 7..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:35 Download gff for BO05820.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 307..1164 7..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:35 Download gff for BO05820.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4723271..4723380 755..864 100 <- Minus
3R 4723515..4723729 540..754 100 <- Minus
3R 4723796..4724301 34..539 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:20 Download gff for BO05820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 548993..549102 755..864 100 <- Minus
arm_3R 549237..549451 540..754 100 <- Minus
arm_3R 549518..550023 34..539 100 <- Minus

BO05820.complete Sequence

2323 bp assembled on 2008-08-14

GenBank Submission: FJ630156

> BO05820.complete
GAAGTTATCAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGC
GTCGCCGTAACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATG
TTCGTGGTGCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAG
GACGAGTCCCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCA
CCACCATCAACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGC
GATTCGGGCGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCAC
CGTTTTGCGGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACG
AGTTCGCCTGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAG
GTCTCCATCAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTT
GAAGGACATCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCC
GACTGCCCAACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAG
ACCCTGGGCCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTG
GCCGCTGATCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGC
AGGAGCAGGTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATC
ATCGACTTTTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTAT
AGATCTGGACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAG
GATTCAATGAGACGCTGGTGACGGCATACTACAAGTATATGGTTGACATC
GCGGTTCTTTTCGGAGCAAATAGGGACTTGGCCAAGACGGAGCTGCTGTT
ATCTTTGGAGTTCGAGATGGCGCTGGCCAATATCTCCTGGCCCAACGAGA
AGCGACGCAACTCCTCTGAGCTGTACAATCTAAGAACTCCAGCGCAGCTC
CAGGCCGCCTACCCCTACGTGCAGTGGGTGGACTACATGAACGCCCTGCT
GCCGGAGGGACTGAACGTGGCCGAGGACGAGATGATCAACCTGTCGGTGC
CCAGCTTCTTCGAGGACCTTGGCAAGCTGCTGGCCAAGACGCCGAAGCGT
GTCATCGCCAACTATATGTTCTGGCGTATCCACGGCTTCTCCGTGGGATT
TCTGAGTGAGGAGTTCCGCAAGCGACAGCTGCAGTACGCCACAGCCCTTT
CGGGGCGCCAGGAACAGGAGGCTAGATGGAAGGAGTGCGTCGACATCGCC
ACCAGCAGTCTTGGCATTTCCGTGGGATCGCTCTACGTGGGCAAGCACTT
CCACAAGGATTCGAAGGCCAACGCCCTGGAGATGGTCAACGAAATCCGCA
ACGTGTTCAACGACATCCTGGACGAGGTCAACTGGATGGACGCCAAGACG
AAGAAGGAGGCCAAGCTAAAGCTGCACAGCATGGCCACCCACATCGGCTA
TCCGGACGAGATGCTCGACAACGAGAAGCTGGCCGCCTACTACGCCAAGC
TCGACATCGATCCCGACAAGTACTTCGAGTCGTTCCTGGGCATGAACATA
TTTGGCACGGATTACTCGTTCAACAAGCTTCGTTTGCCGGTCAACAAGAC
GGACTGGGTTCGCCACGCTCGTCCGGCGATCGTGAACGCGTTCTACTCGT
CCTTAGAGAACAGTATTCAATTCCCGGCCGGCATCCTGCAGGGGCACTTC
TTCAACGCCCAACGTCCGAAGTACATGAACTTTGGCGCCATTGGCTACGT
GATTGGTCACGAGATCACCCATGGTTTCGACGACCAGGGTCGCCAGTTCG
ACGTGAAGGGCAACCTGCGGGACTGGTGGCACCCGGACACCCAGAAGGCC
TATCTGGCCAAGGCGAAGTGCATCATTGAGCAGTACGGCAACTACACCGA
AAGGGCCACGGGATTGAACTTGAATGGCATCAACACCCAGGGGGAGAATA
TCGCCGACAATGGTGGCGTCAAGGAGTCATACATCGCCTACCGCAGATGG
GCTGAGAAGCACGGACCGGAAGCAAAGCTTCCGGGATTGGACTACACCCC
GGAGCAGATGTTCTGGGTGGCAGCCGGACAGACTTGGTGTGCTAAGTACC
GAAAAGAATCTCTCAAGATGCGTATTACTACCGGCGTGCATTCTCCATCC
GAGTTCCGAGTCCTCGGGTCGCTCAGCAACATGAAGGACTTCGCCAAGGA
CTTCCATTGTCCAGAGGGATCACCCATGAATCCGGTCCAAAAGTGCGAGG
TTTGGGCAAGCTTTCTAGACCAT

BO05820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 2292 CG9761-PC 1..2289 17..2305 11445 100 Plus
Nep2-RA 2292 CG9761-PA 1..2289 17..2305 11445 100 Plus
Nep2-RB 2325 CG9761-PB 1..1292 17..1308 6460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 3103 CG9761-RC 315..2605 15..2305 11455 100 Plus
Nep2-RA 2763 CG9761-RA 315..2605 15..2305 11455 100 Plus
Nep2-RB 2796 CG9761-RB 315..1608 15..1308 6470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4723796..4724301 539..34 2530 100 Minus
3R 32079331 3R 4720981..4721393 1718..1306 2065 100 Minus
3R 32079331 3R 4722774..4723150 1308..932 1885 100 Minus
3R 32079331 3R 4720465..4720715 1969..1719 1255 100 Minus
3R 32079331 3R 4723515..4723729 754..540 1075 100 Minus
3R 32079331 3R 4720224..4720410 2156..1970 935 100 Minus
3R 32079331 3R 4723204..4723380 931..755 885 100 Minus
3R 32079331 3R 4719956..4720106 2305..2155 755 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:32:51 has no hits.

BO05820.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:21 Download gff for BO05820.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 302..2600 7..2305 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:35 Download gff for BO05820.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 317..2605 17..2307 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:42 Download gff for BO05820.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 312..2600 17..2307 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:36 Download gff for BO05820.complete
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 317..2605 17..2307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:36 Download gff for BO05820.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4719954..4720104 2157..2307 98 <- Minus
3R 4720224..4720410 1970..2156 100 <- Minus
3R 4720465..4720715 1719..1969 100 <- Minus
3R 4720981..4721390 1309..1718 100 <- Minus
3R 4722774..4723150 932..1308 100 <- Minus
3R 4723204..4723380 755..931 100 <- Minus
3R 4723515..4723729 540..754 100 <- Minus
3R 4723796..4724301 34..539 100 <- Minus
3R 4731546..4731562 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:35 Download gff for BO05820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 548926..549102 755..931 100 <- Minus
arm_3R 546703..547112 1309..1718 100 <- Minus
arm_3R 548496..548872 932..1308 100 <- Minus
arm_3R 545676..545826 2157..2307 98 <- Minus
arm_3R 545946..546132 1970..2156 100 <- Minus
arm_3R 546187..546437 1719..1969 100 <- Minus
arm_3R 549237..549451 540..754 100 <- Minus
arm_3R 549518..550023 34..539 100 <- Minus
arm_3R 557268..557284 17..33 100   Minus

BO05820.pep Sequence

Translation from 16 to 2323

> BO05820.pep
MQTVIQNPNWWRRRNKLEKSLLVSLGIMFVVLATGFGLWIGKVLRTSPPS
NPQATALHGDSTTINQVPTGTASKGKSGDSGDVCLTQECIHTASTVLRKM
KPEVEPCDNFYEFACGTYLEEENIPDDKVSISTFSVISDKLQEQLKDIIT
AERPETEPKHFRLPNLLYKACMNKTLIETLGPEPITRVAERLGGWPLIKG
DSWNADDSWTWQEQVKKFRTAGFSMDYIIDFSIGVDLQNSTKRLIDLDQS
SLALSREYLVKGFNETLVTAYYKYMVDIAVLFGANRDLAKTELLLSLEFE
MALANISWPNEKRRNSSELYNLRTPAQLQAAYPYVQWVDYMNALLPEGLN
VAEDEMINLSVPSFFEDLGKLLAKTPKRVIANYMFWRIHGFSVGFLSEEF
RKRQLQYATALSGRQEQEARWKECVDIATSSLGISVGSLYVGKHFHKDSK
ANALEMVNEIRNVFNDILDEVNWMDAKTKKEAKLKLHSMATHIGYPDEML
DNEKLAAYYAKLDIDPDKYFESFLGMNIFGTDYSFNKLRLPVNKTDWVRH
ARPAIVNAFYSSLENSIQFPAGILQGHFFNAQRPKYMNFGAIGYVIGHEI
THGFDDQGRQFDVKGNLRDWWHPDTQKAYLAKAKCIIEQYGNYTERATGL
NLNGINTQGENIADNGGVKESYIAYRRWAEKHGPEAKLPGLDYTPEQMFW
VAAGQTWCAKYRKESLKMRITTGVHSPSEFRVLGSLSNMKDFAKDFHCPE
GSPMNPVQKCEVWASFLDH

BO05820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-PC 763 CG9761-PC 1..763 1..763 4059 100 Plus
Nep2-PA 763 CG9761-PA 1..763 1..763 4059 100 Plus
Nep2-PB 774 CG9761-PB 1..774 1..763 4037 98.6 Plus
Nep1-PD 849 CG5905-PD 102..849 11..763 1357 37 Plus
Nep1-PC 849 CG5905-PC 102..849 11..763 1357 37 Plus