Clone BO05822 Report

Search the DGRC for BO05822

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptSap-r-RA
Protein status:BO05822.pep: Imported from assembly
Sequenced Size:2893

Clone Sequence Records

BO05822.3prime Sequence

911 bp (856 high quality bases) assembled on 2005-12-02

> BO05822.3prime
ATGGTCTAGAAAGCTTGCGGCTGAAATTCTAGCAAAGGCCAGCGAAGACT
TCTCGCTTTCGAAACACTTGCCAATCTCGGCGCAAATATGCGACTGATCA
ATATAGGGTCGTTTGGCCAAGTTCTTAATGCTACTGCCATAGATGGAGAT
CATCTCAGAGCAGATCTTGTAGTACTTGGCTGGCAAGTTCTCGCATCCCA
CCGATGTCATCTGTAGGGCTGTCACTTCGGATACGTTATCTTTCTTCTCG
CGCAGGAAGGGCAACAGAGCCTGGGTGACTCCATGGCACACACCACACTC
CAAAACTTCATCGGTGACGGCCACGCTGAAGCAGAGCTGCAGTTTCTGGC
ACACCTGCTTGGGCGGCACATCGCTCAGCAATTTCAGGACCGCAGAGGCA
TATCCATCGACGAAGGTGTCGCACTGTTTGCGCACCGTGGCTGGCAGGCG
ATTGCACACGGCTTCAATCGCTCGCTTAATGTCGTCCTGTTCGGTCTTAT
TCTTTAGATCGGCATCCAACTTGGTCATGATAAATTCGCAAAGGACGCAG
GTGGGCGGCTCCTTGATGCTGCTAGACAGCTTGTTGTCCTGGCGCGGCAG
AGCAATCACGTCGTACTTCAAAGCCTCATCCACTTCGAGATCATCCAGAT
CAGCCAGGATGCACATTCCCAACTCCGTGCAGATAAGCTTGGGATCCATT
TCCTTTAACAGCAGATCGGCGATCTTATCGCCGTACTTGTCGATAACCTT
GTGGCATTTAGTGTTCATTGGCTTCCTCATTCGGTCGCAAGACTCCTCCA
GGATATGCTTGATGCTGTCTCTGGTGGGGTGCTTGCCCATACGCTTCTCC
AAGGTCTTAACCAACTCCTCGCAGATCAGGCAGTTCGGAGCAGCGGTGAA
TCCTGGGTCGA

BO05822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12070-PA 2862 Sap-r-RA 1967..2859 911..19 4465 100 Minus
CG12070-PB 2631 Sap-r-RB 1736..2628 911..19 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RB 3349 CG12070-RB 2005..2897 911..19 4465 100 Minus
Sap-r-RA 3440 CG12070-RA 2096..2988 911..19 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30884175..30884650 163..638 2380 100 Plus
3R 32079331 3R 30884720..30884992 639..911 1365 100 Plus
3R 32079331 3R 30883976..30884117 21..162 710 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:56:49 has no hits.

BO05822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:15 Download gff for BO05822.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-PA 1968..2862 15..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:02 Download gff for BO05822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12070-PB 1737..2631 15..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:48 Download gff for BO05822.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 2097..2992 14..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:49 Download gff for BO05822.3prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 2097..2992 14..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:49 Download gff for BO05822.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30883969..30884117 12..162 98 <- Plus
3R 30884175..30884650 163..638 100 <- Plus
3R 30884720..30884991 639..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:48 Download gff for BO05822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26709691..26709839 12..162 98 <- Plus
arm_3R 26709897..26710372 163..638 100 <- Plus
arm_3R 26710442..26710713 639..910 100   Plus

BO05822.5prime Sequence

927 bp (798 high quality bases) assembled on 2005-12-02

> BO05822.5prime
GAAGTTATCAGTCGACATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCAC
TGTGCTGCGCCTTTGGCGTCTTCGCCGCTGCCACGCCCCTTTTGGGCTCC
AGCAAGTGCACCTGGGGACCCTCCTACTGGTGCGGAAATTTCAGCAACTC
CAAGGAATGTCGTGCCACCCGCCACTGCATCCAAACCGTTTGGGAAACCC
AAAAGGTGCCGGTGGACACGGACTCCATCTGCACGATATGCAAGGACATG
GTTACTCAGGCCCGCGACCAGCTGAAGAGCAACCAGACAGAGGAGGAGCT
GAAGGAGGTCTTCGAGGGCTCCTGCAAGCTGATTCCGATCAAGCCGATCC
AGAAGGAGTGCATCAAGGTGGCCGATGACTTCCTGCCCGAGTTGGTCGAG
GCCCTGGCCTCGCAGATGAATCCAGATCAAGTTTGCTCTGTGGCCGGACT
TTGCAACAGTGCTCGCATCGACGAATTGTATAAGAACGGCATTCAGGCTG
GTCTTGATGGAACCGTCCAGAATGAAGATGACAGCTCCGAGGAGACCGAG
TTGGCCATGCAGCCTAACCAACTTTCCTGCGGCAACTGCAACCTGCTTTC
CCGCCTGATGCACTCGAAATTTGCGGCTACCGATCGCGATGACATGGTGG
AAACGATGCTTCATATGTGCGGATCGCTATCTAGTTTCTCAGACGCCTGT
GCCAACATTGTGCTCACCTATTTTAATGATATCTACGACCATGTGAGCAA
GCACTTGACCACGGATGCCGTGTGCCATGTGTCCGGAGTGTGTGCCTCCA
GATATCACCAGCATGAAGAGGAAAAGCAACCGCAAGAAGCCTTAGTTGCC
TTGGATGCCGGCGATGATATTCCATGCGAACTATGCGAGCAACTAGTAAA
GCACCTTCGCGACGTCTTGGTGGCCAA

BO05822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12070-PA 2862 Sap-r-RA 1..911 17..927 4555 100 Plus
CG12070-PB 2631 Sap-r-RB 1..680 248..927 3400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RA 3440 CG12070-RA 130..1040 17..927 4555 100 Plus
Sap-r-RB 3349 CG12070-RB 87..949 65..927 4315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30886048..30886547 927..428 2500 100 Minus
3R 32079331 3R 30886622..30886907 427..142 1430 100 Minus
3R 32079331 3R 30888661..30888740 144..65 400 100 Minus
3R 32079331 3R 30888884..30888933 66..17 250 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:54:01 has no hits.

BO05822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:16 Download gff for BO05822.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:04 Download gff for BO05822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12070-PA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:27 Download gff for BO05822.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..1038 17..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:44 Download gff for BO05822.5prime
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..1038 17..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:44 Download gff for BO05822.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30886050..30886547 428..925 100 <- Minus
3R 30886622..30886904 145..427 100 <- Minus
3R 30888661..30888739 66..144 100 <- Minus
3R 30888885..30888933 17..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:27 Download gff for BO05822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26711772..26712269 428..925 100 <- Minus
arm_3R 26712344..26712626 145..427 100 <- Minus
arm_3R 26714383..26714461 66..144 100 <- Minus
arm_3R 26714607..26714655 17..65 100   Minus

BO05822.complete Sequence

2893 bp assembled on 2008-08-14

GenBank Submission: FJ630157

> BO05822.complete
GAAGTTATCAGTCGACATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCAC
TGTGCTGCGCCTTTGGCGTCTTCGCCGCTGCCACGCCCCTTTTGGGCTCC
AGCAAGTGCACCTGGGGACCCTCCTACTGGTGCGGAAATTTCAGCAACTC
CAAGGAATGTCGTGCCACCCGCCACTGCATCCAAACCGTTTGGGAAACCC
AAAAGGTGCCGGTGGACACGGACTCCATCTGCACGATATGCAAGGACATG
GTTACTCAGGCCCGCGACCAGCTGAAGAGCAACCAGACAGAGGAGGAGCT
GAAGGAGGTCTTCGAGGGCTCCTGCAAGCTGATTCCGATCAAGCCGATCC
AGAAGGAGTGCATCAAGGTGGCCGATGACTTCCTGCCCGAGTTGGTCGAG
GCCCTGGCCTCGCAGATGAATCCAGATCAAGTTTGCTCTGTGGCCGGACT
TTGCAACAGTGCTCGCATCGACGAATTGTATAAGAACGGCATTCAGGCTG
GTCTTGATGGAACCGTCCAGAATGAAGATGACAGCTCCGAGGAGACCGAG
TTGGCCATGCAGCCTAACCAACTTTCCTGCGGCAACTGCAACCTGCTTTC
CCGCCTGATGCACTCGAAATTTGCGGCTACCGATCGCGATGACATGGTGG
AAACGATGCTTCATATGTGCGGATCGCTATCTAGTTTCTCAGACGCCTGT
GCCAACATTGTGCTCACCTATTTTAATGATATCTACGACCATGTGAGCAA
GCACTTGACCACGGATGCCGTGTGCCATGTGTCCGGAGTGTGTGCCTCCA
GATATCACCAGCATGAAGAGGAAAAGCAACCGCAAGAAGCCTTAGTTGCC
TTGGATGCCGGCGATGATATTCCATGCGAACTATGCGAGCAACTAGTAAA
GCACCTTCGCGACGTCTTGGTGGCCAACACCACTGAAACGGAGTTCAAGC
AAGTTATGGAAGGATTCTGCAAGCAGTCAAAGGGATTCAAGGACGAGTGC
CTTAGCATTGTTGACCAATACTACCATGTGATTTACGAGACTCTGGTCAG
CAAGTTAGATGCCAATGGAGCCTGCTGCATGATCGGCATTTGCCAGAAGA
ACTCCGCCTCCTCGATGAAGGATGTCCCAATCATGCCGCTGCTGCCTGTT
ATTGAGCCGGCTCAGGTAAAGATCACCATCGAGAAGCTGGAGAAGCACGA
GAAGAAGCAACTGGGCGCCAGTGAGCCGAAGTTCAGCCAGCAAGAGATCC
TGGACATGCAGCTGCCCATTGATCACCTAATGGGTGCAGCTAATCCCGGA
GCTTTGGTCGAGGGTGGAGAGCTGTGCACCCTGTGTGAGTACATGCTGCA
TTTCATTCAGGAGACTCTGGCTACCCCCTCCACGGATGACGAGATCAAGC
ACACCGTGGAGAACATCTGCGCCAAACTGCCCTCGGGAGTTGCCGGTCAA
TGCCGCAACTTCGTGGAGATGTATGGCGATGCTGTGATAGCTCTGCTCGT
CCAAGGACTGAATCCTCGTGACGTGTGCCCCCTCATGCAGATGTGCCCGA
AGAATCTGCCCAAGAAGGAAGATGTCGAAGTGTTCAATCCCCAGCCAGCC
AGCGATGAGCAGGATCCCCCAACTTGCCCTCTGTGCCTCTTTGCCGTTGA
GCAGGCCCAGATGAAGATCCGCGACAACAAGTCCAAGGATAATATCAAAA
AGGTTCTGAATGGCCTTTGCAGCCATCTGCCCAACGAGATAAAGGAAGAA
TGCGTAGACTTCGTGAACACCTATTCCAATGAGCTGATCGACATGCTGAT
CACAGATTTTAAGCCGCAGGAGATCTGCGTCCAACTGAAGCTCTGCCCAA
AGACCACTTACGCTCTCTGGGACTTGCGCATCTCGCTGGAGGACGATGTC
GATGGTGAGGACAAATCCAGCAGTGAGGAAATCAGCTTCAATGACATTGA
GTCCCTTGAGGAGCTGCCCCCTCAGCTGGCCTTCGACCCAGGATTCACCG
CTGCTCCGAACTGCCTGATCTGCGAGGAGTTGGTTAAGACCTTGGAGAAG
CGTATGGGCAAGCACCCCACCAGAGACAGCATCAAGCATATCCTGGAGGA
GTCTTGCGACCGAATGAGGAAGCCAATGAACACTAAATGCCACAAGGTTA
TCGACAAGTACGGCGATAAGATCGCCGATCTGCTGTTAAAGGAAATGGAT
CCCAAGCTTATCTGCACGGAGTTGGGAATGTGCATCCTGGCTGATCTGGA
TGATCTCGAAGTGGATGAGGCTTTGAAGTACGACGTGATTGCTCTGCCGC
GCCAGGACAACAAGCTGTCTAGCAGCATCAAGGAGCCGCCCACCTGCGTC
CTTTGCGAATTTATCATGACCAAGTTGGATGCCGATCTAAAGAATAAGAC
CGAACAGGACGACATTAAGCGAGCGATTGAAGCCGTGTGCAATCGCCTGC
CAGCCACGGTGCGCAAACAGTGCGACACCTTCGTCGATGGATATGCCTCT
GCGGTCCTGAAATTGCTGAGCGATGTGCCGCCCAAGCAGGTGTGCCAGAA
ACTGCAGCTCTGCTTCAGCGTGGCCGTCACCGATGAAGTTTTGGAGTGTG
GTGTGTGCCATGGAGTCACCCAGGCTCTGTTGCCCTTCCTGCGCGAGAAG
AAAGATAACGTATCCGAAGTGACAGCCCTACAGATGACATCGGTGGGATG
CGAGAACTTGCCAGCCAAGTACTACAAGATCTGCTCTGAGATGATCTCCA
TCTATGGCAGTAGCATTAAGAACTTGGCCAAACGACCCTATATTGATCAG
TCGCATATTTGCGCCGAGATTGGCAAGTGTTTCGAAAGCGAGAAGTCTTC
GCTGGCCTTTGCTAGAATTTCAGCCGCAAGCTTTCTAGACCAT

BO05822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RA 2862 CG12070-PA 1..2859 17..2875 14295 100 Plus
Sap-r-RB 2631 CG12070-PB 1..2628 248..2875 13140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-RA 3440 CG12070-RA 130..2988 17..2875 14295 100 Plus
Sap-r-RB 3349 CG12070-RB 87..2897 65..2875 14055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30884720..30886547 2255..428 9140 100 Minus
3R 32079331 3R 30884175..30884650 2731..2256 2380 100 Minus
3R 32079331 3R 30886622..30886907 427..142 1430 100 Minus
3R 32079331 3R 30883976..30884117 2873..2732 710 100 Minus
3R 32079331 3R 30888661..30888740 144..65 400 100 Minus
3R 32079331 3R 30888884..30888933 66..17 250 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:38:40 has no hits.

BO05822.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:44 Download gff for BO05822.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 141..3003 17..2880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:22 Download gff for BO05822.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..2988 17..2877 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:34 Download gff for BO05822.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 141..2999 17..2877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:47 Download gff for BO05822.complete
Subject Subject Range Query Range Percent Splice Strand
Sap-r-RA 130..2988 17..2877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:47 Download gff for BO05822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30883974..30884117 2732..2877 97 <- Minus
3R 30884175..30884650 2256..2731 100 <- Minus
3R 30884720..30886547 428..2255 100 <- Minus
3R 30886622..30886904 145..427 100 <- Minus
3R 30888661..30888739 66..144 100 <- Minus
3R 30888885..30888933 17..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:22 Download gff for BO05822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26709696..26709839 2732..2877 97 <- Minus
arm_3R 26709897..26710372 2256..2731 100 <- Minus
arm_3R 26710442..26712269 428..2255 100 <- Minus
arm_3R 26712344..26712626 145..427 100 <- Minus
arm_3R 26714383..26714461 66..144 100 <- Minus
arm_3R 26714607..26714655 17..65 100   Minus

BO05822.pep Sequence

Translation from 16 to 2893

> BO05822.pep
MERAGLLAVLALCCAFGVFAAATPLLGSSKCTWGPSYWCGNFSNSKECRA
TRHCIQTVWETQKVPVDTDSICTICKDMVTQARDQLKSNQTEEELKEVFE
GSCKLIPIKPIQKECIKVADDFLPELVEALASQMNPDQVCSVAGLCNSAR
IDELYKNGIQAGLDGTVQNEDDSSEETELAMQPNQLSCGNCNLLSRLMHS
KFAATDRDDMVETMLHMCGSLSSFSDACANIVLTYFNDIYDHVSKHLTTD
AVCHVSGVCASRYHQHEEEKQPQEALVALDAGDDIPCELCEQLVKHLRDV
LVANTTETEFKQVMEGFCKQSKGFKDECLSIVDQYYHVIYETLVSKLDAN
GACCMIGICQKNSASSMKDVPIMPLLPVIEPAQVKITIEKLEKHEKKQLG
ASEPKFSQQEILDMQLPIDHLMGAANPGALVEGGELCTLCEYMLHFIQET
LATPSTDDEIKHTVENICAKLPSGVAGQCRNFVEMYGDAVIALLVQGLNP
RDVCPLMQMCPKNLPKKEDVEVFNPQPASDEQDPPTCPLCLFAVEQAQMK
IRDNKSKDNIKKVLNGLCSHLPNEIKEECVDFVNTYSNELIDMLITDFKP
QEICVQLKLCPKTTYALWDLRISLEDDVDGEDKSSSEEISFNDIESLEEL
PPQLAFDPGFTAAPNCLICEELVKTLEKRMGKHPTRDSIKHILEESCDRM
RKPMNTKCHKVIDKYGDKIADLLLKEMDPKLICTELGMCILADLDDLEVD
EALKYDVIALPRQDNKLSSSIKEPPTCVLCEFIMTKLDADLKNKTEQDDI
KRAIEAVCNRLPATVRKQCDTFVDGYASAVLKLLSDVPPKQVCQKLQLCF
SVAVTDEVLECGVCHGVTQALLPFLREKKDNVSEVTALQMTSVGCENLPA
KYYKICSEMISIYGSSIKNLAKRPYIDQSHICAEIGKCFESEKSSLAFAR
ISAASFLDH

BO05822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sap-r-PA 953 CG12070-PA 1..953 1..953 5029 100 Plus
Sap-r-PB 876 CG12070-PB 1..876 78..953 4598 100 Plus
Sap-r-PB 876 CG12070-PB 354..861 66..610 296 20.1 Plus