Clone BO05823 Report

Search the DGRC for BO05823

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG5498-RB
Protein status:BO05823.pep: validated full length
Sequenced Size:1378

Clone Sequence Records

BO05823.3prime Sequence

852 bp (851 high quality bases) assembled on 2005-12-02

> BO05823.3prime
ATGGTCTAGAAAGCTTGCTATCGCAGTTTTCACGGATTTTACACTGGATT
GCGATACAGTACCATCCTCCACCTCAAGATCCTGCAGCATGGCAATCATC
TCCTCGTCCGTAATCACAACCTCCGCCCTTAGGTTGTTATTAATATGTGG
ACTAAACGTAGCCGGCGCAGATTCTCCAGCCAGTTCACGCAATTCCTGCT
CAAGTTGATCATCTTCCTGGCTCGCGTTCTCCACAACGCTATTGGACATT
ATGTCCTGAACTTCCCGATGCTGGTCGAGCGTGTCCCGCACATCGGCCAA
TACTTCGTCGACATTGTCGTACTTCAATCCAGAATTCGAGAGAACCTTCT
TCAAGGTATTTGATCCGATCTTGTAGGCATCCAGAACAACGCCACTGTTC
TGGGCCTCATCCACACTGGACAGAAGAGATTCGATGTTGTGCAGGGCAAG
ACTGCGACGTTCATGATTCTTTTCCAGGAGATGCCTTTTTCGTAGATAGG
TTTTTGCCATTTGCCGTTTGTTCTCCTTCATGTACTGGCGCACTTTGTCA
TCGTTCACCTTGATCTCCTCCTCTAGGTCCTCCAACTGCTTGAGTAACTG
AGCTTGGGTATTCTGAAGATTGTGGACGGCCTGGTCTTCTTGGCTTATAT
TAAGATCGTCGCCAGGTTTTTTTGGTATTTTGATCAAGTGAATTTGGCGT
ATGCCTTTTTCTACTTTAAATTCTAGGCCCAAGATTTGACGAACATTTAA
GGCCAACAGGCAAGCGCATAGATCTTTGTCTGAGTAAGTGGGAACTCCGT
GAGTCTTACAAAGCGTTTTCAAAGCATTAAAGTGCAGTAGTTTTCCAGTG
TT

BO05823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 1347 CG5498-RB 511..1344 852..19 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 597..1430 852..19 4170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20382498..20382941 19..462 2220 100 Plus
3L 28110227 3L 20383010..20383219 462..671 1050 100 Plus
3L 28110227 3L 20383281..20383461 672..852 905 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:47:38 has no hits.

BO05823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:17 Download gff for BO05823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 511..1347 15..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:05 Download gff for BO05823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 511..1347 15..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:00 Download gff for BO05823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 597..1438 11..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:28 Download gff for BO05823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 597..1438 11..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:28 Download gff for BO05823.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20382490..20382940 11..461 99 <- Plus
3L 20383010..20383219 462..671 100 <- Plus
3L 20383281..20383461 672..852 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:00 Download gff for BO05823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20375590..20376040 11..461 99 <- Plus
arm_3L 20376110..20376319 462..671 100 <- Plus
arm_3L 20376381..20376561 672..852 100   Plus

BO05823.5prime Sequence

854 bp (805 high quality bases) assembled on 2005-11-29

> BO05823.5prime
GAAGTTATCAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAA
CCGACCACTTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAG
GTGCAGTTCGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGA
CGCAAAAATGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCA
GCGGACGACCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGG
GGTGACCAACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCA
GAGGAAGCAGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATT
CCTGGGGTGGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGG
AGCTGGTCGAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTC
CGCTTTAATTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATC
TCATCGCCGAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTT
AATGCTTTGAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGA
CAAAGATCTATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGG
GCCTAGAATTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAA
ATACCAAAAAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGC
CGTCCACAATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGG
ACCTAGAGGAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATG
AAAG

BO05823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 1347 CG5498-RB 1..836 17..852 4180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 87..922 17..852 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20383553..20384023 487..17 2355 100 Minus
3L 28110227 3L 20383281..20383500 707..488 1100 100 Minus
3L 28110227 3L 20383075..20383219 852..708 725 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:38:59 has no hits.

BO05823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:18 Download gff for BO05823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 1..837 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:07 Download gff for BO05823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-PB 1..837 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:43 Download gff for BO05823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..923 17..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:41 Download gff for BO05823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..923 17..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:41 Download gff for BO05823.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20383073..20383219 708..854 99 <- Minus
3L 20383281..20383500 488..707 100 <- Minus
3L 20383553..20384023 17..487 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:43 Download gff for BO05823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20376173..20376319 708..854 99 <- Minus
arm_3L 20376381..20376600 488..707 100 <- Minus
arm_3L 20376653..20377123 17..487 100   Minus

BO05823.complete Sequence

1378 bp (1378 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630158

> BO05823.complete
GAAGTTATCAGTCGACATGGGCCTTGGAAGCGGTGACAGGGTAAATGAAA
CCGACCACTTCAGCTTTCCCGCAAGCTGGCAGGACAACGGTAGAATGCAG
GTGCAGTTCGCCATGTTTCGATCGAGGCATCTGGATGCGGAGGGCTACGA
CGCAAAAATGAATTTCTGGATGGATTTAATTGCAAAATATCTAAAGTTCA
GCGGACGACCAATCTTCAGCCTGCGGGATCTGCAACTGCTGTTCATGAGG
GGTGACCAACTGCCCGCCTGCCTGGACACCGTGATATCCGAGATGCAGCA
GAGGAAGCAGATCCGCTCTCGCAGTGAATTTGAGTACGATCCGGCCAATT
CCTGGGGTGGTTGGCTCGTCAACAGCCTGGTAAAGCGCCCCCTTTCATGG
AGCTGGTCGAAAATCAAGCACAGCGTGGTGACGGAGGACCTGGAAGCCTC
CGCTTTAATTGAATGGATTCACCTAGATGCCTTAAACAACACTTGCGATC
TCATCGCCGAAAAAGTCCTGTCGGAAAACACTGGAAAACTACTGCACTTT
AATGCTTTGAAAACGCTTTGTAAGACTCACGGAGTTCCCACTTACTCAGA
CAAAGATCTATGCGCTTGCCTGTTGGCCTTAAATGTTCGTCAAATCTTGG
GCCTAGAATTTAAAGTAGAAAAAGGCATACGCCAAATTCACTTGATCAAA
ATACCAAAAAAACCTGGCGACGATCTTAATATAAGCCAAGAAGACCAGGC
CGTCCACAATCTTCAGAATACCCAAGCTCAGTTACTCAAGCAGTTGGAGG
ACCTAGAGGAGGAGATCAAGGTGAACGATGACAAAGTGCGCCAGTACATG
AAGGAGAACAAACGGCAAATGGCAAAAACCTATCTACGAAAAAGGCATCT
CCTGGAAAAGAATCATGAACGTCGCAGTCTTGCCCTGCACAACATCGAAT
CTCTTCTGTCCAGTGTGGATGAGGCCCAGAACAGTGGCGTTGTTCTGGAT
GCCTACAAGATCGGATCAAATACCTTGAAGAAGGTTCTCTCGAATTCTGG
ATTGAAGTACGACAATGTCGACGAAGTATTGGCCGATGTGCGGGACACGC
TCGACCAGCATCGGGAAGTTCAGGACATAATGTCCAATAGCGTTGTGGAG
AACGCGAGCCAGGAAGATGATCAACTTGAGCAGGAATTGCGTGAACTGGC
TGGAGAATCTGCGCCGGCTACGTTTAGTCCACATATTAATAACAACCTAA
GGGCGGAGGTTGTGATTACGGACGAGGAGATGATTGCCATGCTGCAGGAT
CTTGAGGTGGAGGATGGTACTGTATCGCAATCCAGTGTAAAATCCGTGAA
AACTGCGATAGCAAGCTTTCTAGACCAT

BO05823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1347 CG5498-PB 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-RB 1523 CG5498-RB 87..1430 17..1360 6720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20383553..20384023 487..17 2355 100 Minus
3L 28110227 3L 20382498..20382941 1360..917 2220 100 Minus
3L 28110227 3L 20383281..20383500 707..488 1100 100 Minus
3L 28110227 3L 20383010..20383219 917..708 1050 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:48:35 has no hits.

BO05823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:26 Download gff for BO05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 1..1347 17..1364 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:47 Download gff for BO05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 72..1423 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:41 Download gff for BO05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..1430 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:26 Download gff for BO05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 72..1423 17..1368 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:04 Download gff for BO05823.complete
Subject Subject Range Query Range Percent Splice Strand
CG5498-RB 87..1430 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:04 Download gff for BO05823.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20382496..20382940 918..1362 99 <- Minus
3L 20383010..20383219 708..917 100 <- Minus
3L 20383281..20383500 488..707 100 <- Minus
3L 20383553..20384023 17..487 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:41 Download gff for BO05823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20375596..20376040 918..1362 99 <- Minus
arm_3L 20376110..20376319 708..917 100 <- Minus
arm_3L 20376381..20376600 488..707 100 <- Minus
arm_3L 20376653..20377123 17..487 100   Minus

BO05823.pep Sequence

Translation from 16 to 1378

> BO05823.pep
MGLGSGDRVNETDHFSFPASWQDNGRMQVQFAMFRSRHLDAEGYDAKMNF
WMDLIAKYLKFSGRPIFSLRDLQLLFMRGDQLPACLDTVISEMQQRKQIR
SRSEFEYDPANSWGGWLVNSLVKRPLSWSWSKIKHSVVTEDLEASALIEW
IHLDALNNTCDLIAEKVLSENTGKLLHFNALKTLCKTHGVPTYSDKDLCA
CLLALNVRQILGLEFKVEKGIRQIHLIKIPKKPGDDLNISQEDQAVHNLQ
NTQAQLLKQLEDLEEEIKVNDDKVRQYMKENKRQMAKTYLRKRHLLEKNH
ERRSLALHNIESLLSSVDEAQNSGVVLDAYKIGSNTLKKVLSNSGLKYDN
VDEVLADVRDTLDQHREVQDIMSNSVVENASQEDDQLEQELRELAGESAP
ATFSPHINNNLRAEVVITDEEMIAMLQDLEVEDGTVSQSSVKSVKTAIAS
FLDH

BO05823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5498-PB 448 CG5498-PB 1..448 1..448 2297 100 Plus
shrb-PA 226 CG8055-PA 20..171 244..398 177 31 Plus
Vps20-PC 212 CG4071-PC 17..180 239..400 156 25.9 Plus
Vps20-PA 212 CG4071-PA 17..180 239..400 156 25.9 Plus