Clone Sequence Records
BO05825.3prime Sequence
810 bp (747 high quality bases) assembled on 2005-12-02
> BO05825.3prime
ATGGTCTAGAAAGCTTGCCATGACCATATTTTGACGTACCCAGTCAATGT
GCCGTGCAACATCGCAATAGATAACATACTTGCTAAGGTCGCAAATCTCT
CCGTGGCGAGGCGATAAAGAGACCACACCACGAACGTACCATCGATTGTT
ACGCAGGACGATCAGAGCAGATCCCGAGTCTCCGAAGCAGGGACCATGTG
ATTCTGAATTGCCGGCACAGACGGTCCGCCGCGTGATGAAGTCCTCCGCC
CGCTTCATCTCCTTGAGACACTGATCCCGGGGCACCAATCGAACACTCAC
TGTCTTGGGAAACCGCGTCTTCTGGGCACTCCTGTCGTAGCCCCAACCGG
CTACTGCTCCAGTATCGCCCTCATTCGGTGGCAATCCCATATTGGAGCCC
CAAAGGCAGAGGGGTCGAATGTACTTGGTGTACACCATCGGAGAGGTCAG
CACCAGCAGACCAACGTCCGCATCCGGAACTGGATTGCCCTCGTAGGCGG
ACGGAGTCAGCACGCTGGTCACGCTAACCAGGGAGGCTCCATTCTCAGGA
TTCTCGTTGCGATCATGCCTGCCCAAATAGACCCAAAGCTGGCTGGCGCT
CTTTCCATAAATGCAGTGAGCTGCCGTGATCACAGTCCGTTTGGAGATAA
CCGACACCACGCATTTGTATGTAGCCGTGCCAACACCTTCGTAAAGGGCC
GCGAGCCAGGGGTACTGACCGCGGGTCACCAGGTCGCCTCCGATTTGAAG
AGGCGAAAAGCCCTCAACGCCGCATTCCTCAAAGTCCGAATCTATTCTGG
GCATGATTGA
BO05825.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-PA | 1320 | CG9631-RA | 526..1317 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 572..1363 | 810..19 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225184..14225975 | 19..810 | 3960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:39:22 has no hits.
BO05825.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:21 Download gff for
BO05825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 527..1320 | 16..809 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:11 Download gff for
BO05825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 527..1320 | 16..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:45 Download gff for
BO05825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 570..1366 | 13..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:44 Download gff for
BO05825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 573..1369 | 13..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:44 Download gff for
BO05825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14225178..14225974 | 13..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:45 Download gff for
BO05825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10050900..10051696 | 13..809 | 99 | | Plus |
BO05825.5prime Sequence
790 bp (789 high quality bases) assembled on 2005-11-29
> BO05825.5prime
GAAGTTATCAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTT
GTCTCAATCTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGT
GAGAGGTATTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGT
CTTCACGGCGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTT
TCACTGCTCACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCG
TATCCCAATAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGG
CGAGGTGTTTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTG
TCCGGGCGGAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGAT
GCCCCTTCAAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCC
AATTAGTCAAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGC
CGCCGAGCACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATG
CCCAGAATAGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCC
TCTTCAAATCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCG
CGGCCCTTTACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCG
GTTATCTCCAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAA
GAGCGCCAGCCAGCTTTGGGTCTATTTGGGCAGGCATGAT
BO05825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-PA | 1320 | CG9631-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 47..820 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225727..14226121 | 790..396 | 1975 | 100 | Minus |
| 3R | 32079331 | 3R | 14226505..14226716 | 228..17 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14226261..14226438 | 399..222 | 875 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:55:35 has no hits.
BO05825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:22 Download gff for
BO05825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:13 Download gff for
BO05825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:23 Download gff for
BO05825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 32..817 | 4..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:44:49 Download gff for
BO05825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 35..820 | 4..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:44:49 Download gff for
BO05825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14225727..14226121 | 396..790 | 100 | <- | Minus |
| 3R | 14226265..14226436 | 224..395 | 100 | <- | Minus |
| 3R | 14226510..14226721 | 11..223 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:23 Download gff for
BO05825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10051449..10051843 | 396..790 | 100 | <- | Minus |
| arm_3R | 10051987..10052158 | 224..395 | 100 | <- | Minus |
| arm_3R | 10052232..10052443 | 11..223 | 98 | <- | Minus |
BO05825.complete Sequence
1351 bp (1351 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630159
> BO05825.complete
GAAGTTATCAGTCGACATGACAATCTTGTGGCTGACCTTGCTGGGCCTTT
GTCTCAATCTGAAACTCGGGTCGGCGTTGCACGTGCCGCAGCATAATTGT
GAGAGGTATTTCTCCTACTACAAAGAGGACAGTGGAGCCTACATTGGCGT
CTTCACGGCGCCACGCGCTGGTGTGAACAGCCTATCATGGGAGGTGGTTT
TCACTGCTCACGGAACTGGTGAGGCAAACACTGTGGGCTCACTCATTCCG
TATCCCAATAAGGAAAGGGCCTTTGAAAAGATACACAGCGGAGAACGTGG
CGAGGTGTTTGTGCGTTTCACGGATTTTGGAAACGAGCTGCCCAAACTTG
TCCGGGCGGAATTCAACGGCGAGGTTCTGTGTCAAAATGAGGAGTATGAT
GCCCCTTCAAGCACAATGACCCGACGCCAGTCCATGTCCACCTCAACGCC
AATTAGTCAAAAGTCAGCACCAAGAGAAATAGTGCGTCAGCGGCGTCCGC
CGCCGAGCACACCGAGCAATGACCCCAATCCTTTCCTTCCTTCAATCATG
CCCAGAATAGATTCGGACTTTGAGGAATGCGGCGTTGAGGGCTTTTCGCC
TCTTCAAATCGGAGGCGACCTGGTGACCCGCGGTCAGTACCCCTGGCTCG
CGGCCCTTTACGAAGGTGTTGGCACGGCTACATACAAATGCGTGGTGTCG
GTTATCTCCAAACGGACTGTGATCACGGCAGCTCACTGCATTTATGGAAA
GAGCGCCAGCCAGCTTTGGGTCTATTTGGGCAGGCATGATCGCAACGAGA
ATCCTGAGAATGGAGCCTCCCTGGTTAGCGTGACCAGCGTGCTGACTCCG
TCCGCCTACGAGGGCAATCCAGTTCCGGATGCGGACGTTGGTCTGCTGGT
GCTGACCTCTCCGATGGTGTACACCAAGTACATTCGACCCCTCTGCCTTT
GGGGCTCCAATATGGGATTGCCACCGAATGAGGGCGATACTGGAGCAGTA
GCCGGTTGGGGCTACGACAGGAGTGCCCAGAAGACGCGGTTTCCCAAGAC
AGTGAGTGTTCGATTGGTGCCCCGGGATCAGTGTCTCAAGGAGATGAAGC
GGGCGGAGGACTTCATCACGCGGCGGACCGTCTGTGCCGGCAATTCAGAA
TCACATGGTCCCTGCTTCGGAGACTCGGGATCTGCTCTGATCGTCCTGCG
TAACAATCGATGGTACGTTCGTGGTGTGGTCTCTTTATCGCCTCGCCACG
GAGAGATTTGCGACCTTAGCAAGTATGTTATCTATTGCGATGTTGCACGG
CACATTGACTGGGTACGTCAAAATATGGTCATGGCAAGCTTTCTAGACCA
T
BO05825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1320 | CG9631-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-RA | 1449 | CG9631-RA | 47..1363 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14225184..14226121 | 1333..396 | 4690 | 100 | Minus |
| 3R | 32079331 | 3R | 14226505..14226716 | 228..17 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14226261..14226438 | 399..222 | 875 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:55:15 has no hits.
BO05825.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:27 Download gff for
BO05825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 1..1320 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:49 Download gff for
BO05825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 19..1353 | 4..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:27 Download gff for
BO05825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 44..1360 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:27 Download gff for
BO05825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 19..1353 | 4..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:19 Download gff for
BO05825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9631-RA | 47..1363 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:19 Download gff for
BO05825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14225181..14226121 | 396..1335 | 99 | <- | Minus |
| 3R | 14226265..14226436 | 224..395 | 100 | <- | Minus |
| 3R | 14226510..14226716 | 17..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:27 Download gff for
BO05825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10050903..10051843 | 396..1335 | 99 | <- | Minus |
| arm_3R | 10051987..10052158 | 224..395 | 100 | <- | Minus |
| arm_3R | 10052232..10052438 | 17..223 | 100 | | Minus |
BO05825.pep Sequence
Translation from 16 to 1351
> BO05825.pep
MTILWLTLLGLCLNLKLGSALHVPQHNCERYFSYYKEDSGAYIGVFTAPR
AGVNSLSWEVVFTAHGTGEANTVGSLIPYPNKERAFEKIHSGERGEVFVR
FTDFGNELPKLVRAEFNGEVLCQNEEYDAPSSTMTRRQSMSTSTPISQKS
APREIVRQRRPPPSTPSNDPNPFLPSIMPRIDSDFEECGVEGFSPLQIGG
DLVTRGQYPWLAALYEGVGTATYKCVVSVISKRTVITAAHCIYGKSASQL
WVYLGRHDRNENPENGASLVSVTSVLTPSAYEGNPVPDADVGLLVLTSPM
VYTKYIRPLCLWGSNMGLPPNEGDTGAVAGWGYDRSAQKTRFPKTVSVRL
VPRDQCLKEMKRAEDFITRRTVCAGNSESHGPCFGDSGSALIVLRNNRWY
VRGVVSLSPRHGEICDLSKYVIYCDVARHIDWVRQNMVMASFLDH
BO05825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9631-PA | 439 | CG9631-PA | 1..439 | 1..439 | 2346 | 100 | Plus |
| Sp212-PC | 516 | CG33329-PC | 197..515 | 129..437 | 481 | 32.9 | Plus |
| CG9649-PA | 504 | CG9649-PA | 4..502 | 6..437 | 457 | 29.6 | Plus |
| CG31326-PA | 520 | CG31326-PA | 170..518 | 103..437 | 337 | 29.3 | Plus |
| gd-PC | 528 | CG1505-PC | 254..523 | 203..433 | 317 | 29.5 | Plus |
| Sp212-PC | 516 | CG33329-PC | 3..138 | 6..143 | 165 | 31.2 | Plus |
