Clone Sequence Records
BO05827.3prime Sequence
857 bp (742 high quality bases) assembled on 2005-12-02
> BO05827.3prime
ATGGTCTAGAAAGCTTGCATCGAATGTTGTCCAGTTGTTCATGCCCTTTC
CGGTGGTGAGCTGCTGCGACTTCTCCGTTCCGTTGGCGTTCAGGGTGAAC
TGGTCCAGGCCGTACTTGCGGAGCAGCTCGAAGTCGTCGTCGGGCTTGGC
GGCAATGGTGTTGCGCTGGATCTGCGGCGGTGGGTGCATCGGTGGCGTCC
GTCCCGTCACAGCTGCCACCGTGGCCATGTGCTTGGGCGCGAAATACGGG
TACAGTGGATTGCTGACGCTACTGGCCACCACACTGCTGTTGACGCCAGC
GGGCAGTGTGCTGCACTTCTTGGCAAATGCCGTGCTGAGCGGCGGCAACG
GACGAGCATTCTGATTGAGCGGATCGAAGTCCTCCAGGTCGAAGCTGGTG
TTGTTGCTATCGTCCAGCGATATCAGATCATTCATGCTGTCCTCCAGTGG
CTGCTGTTGCTCTCTCTTGGCCCGCGGTGTCGGAATGGGCGGATCAGACA
CATTAAGATGCGAGAACGTCGACGCCGCCGTCACAAACGATGCGCCCGAG
GAGGATGAGGTCGCCGATGACGAGGATGCATTCGAGCTGCGTACAGAATC
ATTTCCGGGCTCGTCCTTCCAGCAGTTACGTTCCAGTTTGCTAATCTCTG
CACTGACGGCTGCAGCCGTGGCCGCCACAATCGCATTCGAGCTGCCCTGC
CTCCGGGGCGGAATCGGTGGAGATTGTACGTCCGGCGGACTATCAAAGCT
GCTGGAATCGGCGGTAGGCAGGGGCTGACGCGGTCTGGTGGGCGTGGAGG
TGTGCCTTGGCGGCTTAGACTCCACGTGCGGATGCGCGGCATAGGGATGA
TTGTAGT
BO05827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-PA | 2727 | CG18659-RA | 1886..2724 | 857..19 | 4195 | 100 | Minus |
| CG18659-PB | 1500 | CG18659-RB | 659..1497 | 857..19 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RH | 3759 | CG18659-RH | 2520..3358 | 857..19 | 4195 | 100 | Minus |
| CG18659-RF | 3816 | CG18659-RF | 2577..3415 | 857..19 | 4195 | 100 | Minus |
| CG18659-RE | 3655 | CG18659-RE | 2416..3254 | 857..19 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9123705..9124147 | 19..461 | 2215 | 100 | Plus |
| 2R | 25286936 | 2R | 9124734..9125141 | 450..857 | 1995 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:24:44 has no hits.
BO05827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:23 Download gff for
BO05827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PA | 1886..2727 | 16..857 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:14 Download gff for
BO05827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PB | 659..1500 | 16..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:05 Download gff for
BO05827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 2416..3259 | 14..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:05 Download gff for
BO05827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 2416..3259 | 14..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:05 Download gff for
BO05827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9123700..9124145 | 14..459 | 99 | <- | Plus |
| 2R | 9124744..9125141 | 460..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:05 Download gff for
BO05827.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5011205..5011650 | 14..459 | 99 | <- | Plus |
| arm_2R | 5012249..5012646 | 460..857 | 100 | | Plus |
BO05827.5prime Sequence
803 bp (797 high quality bases) assembled on 2005-11-29
> BO05827.5prime
GAAGTTATCAGTCGACATGTTCATTCCCACACACCTTATTTGCAATACTA
ATCCGGCTGTAAAGTCTGCCGTCAAATCGGTTAAGGAGGGCTCGCGGGGC
ATGAAGACCGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAA
CCAGTTTGGTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATT
CGGATCGTCCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCC
ATCGGGGCTGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCG
TCTTGATGGAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCG
GCGCCAGGGAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCC
ATGTCTAGCTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGC
GAGTGCTGGTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTA
GCTCGGCGAGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAA
CTGCAGAACCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCCTTAA
GCCAAACGCAGAGCACAGGCGAGGAGCAGCACCGCCAGCCCGTCCACCGC
CACCGCAATCTACGCCCGCCTCCTACTACAATCATCCCTATGCCGCGCAT
CCGCACGTGGAGTCTAAGCCGCCAAGGCACACCTCCACGCCCACCAGACC
GCGTCAGCCCCTGCCTACCGCCGATTCCAGCAGCTTTGATAGTCCGCCGG
ACG
BO05827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-PB | 1500 | CG18659-RB | 1..787 | 17..803 | 3935 | 100 | Plus |
| CG18659-PA | 2727 | CG18659-RA | 1258..2014 | 47..803 | 3785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RE | 3655 | CG18659-RE | 1758..2544 | 17..803 | 3935 | 100 | Plus |
| CG18659-RI | 3513 | CG18659-RI | 1648..2408 | 43..803 | 3790 | 99.9 | Plus |
| CG18659-RA | 3519 | CG18659-RA | 1648..2408 | 43..803 | 3790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9125551..9126067 | 595..79 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 9125013..9125220 | 803..596 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:56:59 has no hits.
BO05827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:24 Download gff for
BO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PB | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:16 Download gff for
BO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-PB | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:49 Download gff for
BO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1752..2544 | 10..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:01:14 Download gff for
BO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1752..2544 | 10..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:01:14 Download gff for
BO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9125013..9125220 | 596..803 | 100 | <- | Minus |
| 2R | 9125551..9126066 | 80..595 | 100 | <- | Minus |
| 2R | 9126181..9126213 | 47..79 | 100 | <- | Minus |
| 2R | 9127027..9127062 | 10..46 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:49 Download gff for
BO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5012518..5012725 | 596..803 | 100 | <- | Minus |
| arm_2R | 5013056..5013571 | 80..595 | 100 | <- | Minus |
| arm_2R | 5013686..5013718 | 47..79 | 100 | <- | Minus |
| arm_2R | 5014532..5014567 | 10..46 | 94 | | Minus |
BO05827.complete Sequence
1531 bp (1531 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630160
> BO05827.complete
GAAGTTATCAGTCGACATGTTCATTCCCACACACCTTATTTGCAATACTA
ATCCGGCTGTAAAGTCTGCCGTCAAATCGGTTAAGGAGGGCTCGCGGGGC
ATGAAGACCGCCTATAAGGGATTCAAGACAAAGCTGCGCGAGAACGGAAA
CCAGTTTGGTGGCACGCACTTCCACTTTGGACTTGGCTCCCCGAATCATT
CGGATCGTCCTGACGGCACCAGCGGAGGATACGTTCGTGGTGGCAAGGCC
ATCGGGGCTGCACACCACTCGGCGCCCAGTTCTCCAGTGACCAGCAAGCG
TCTTGATGGAATTGCCTCCGTCACGGGAAGCAGCGGCAGCGGTGGATCCG
GCGCCAGGGAGCCGCGGGAGTTCCTGCGACGCGGTCCCGTCCCGCTGGCC
ATGTCTAGCTCGAGCAGCCACATTCAGCCGAACGGCCATGCGTACGGTGC
GAGTGCTGGTGCTCATTATGGTCATCATCTCGCTGCGTCTCCTGCTGTTA
GCTCGGCGAGCTCGCTCTGCTCATCTTCGGAGATGAACCTGTCGCAGGAA
CTGCAGAACCATCCGCTTTTCAAGACGCCGGCAGTGGACCGCAGCCTTAA
GCCAAACGCAGAGCACAGGCGAGGAGCAGCACCGCCAGCCCGTCCACCGC
CACCGCAATCTACGCCCGCCTCCTACTACAATCATCCCTATGCCGCGCAT
CCGCACGTGGAGTCTAAGCCGCCAAGGCACACCTCCACGCCCACCAGACC
GCGTCAGCCCCTGCCTACCGCCGATTCCAGCAGCTTTGATAGTCCGCCGG
ACGTACAATCTCCACCGATTCCGCCCCGGAGGCAGGGCAGCTCGAATGCG
ATTGTGGCGGCCACGGCTGCAGCCGTCAGTGCAGAGATTAGCAAACTGGA
ACGTAACTGCTGGAAGGACGAGCCCGGAAATGATTCTGTACGCAGCTCGA
ATGCATCCTCGTCATCGGCGACCTCATCCTCCTCGGGCGCATCGTTTGTG
ACGGCGGCGTCGACGTTCTCGCATCTTAATGTGTCTGATCCGCCCATTCC
GACACCGCGGGCCAAGAGAGAGCAACAGCAGCCACTGGAGGACAGCATGA
ATGATCTGATATCGCTGGACGATAGCAACAACACCAGCTTCGACCTGGAG
GACTTCGATCCGCTCAATCAGAATGCTCGTCCGTTGCCGCCGCTCAGCAC
GGCATTTGCCAAGAAGTGCAGCACACTGCCCGCTGGCGTCAACAGCAGTG
TGGTGGCCAGTAGCGTCAGCAATCCACTGTACCCGTATTTCGCGCCCAAG
CACATGGCCACGGTGGCAGCTGTGACGGGACGGACGCCACCGATGCACCC
ACCGCCGCAGATCCAGCGCAACACCATTGCCGCCAAGCCCGACGACGACT
TCGAGCTGCTCCGCAAGTACGGCCTGGACCAGTTCACCCTGAACGCCAAC
GGAACGGAGAAGTCGCAGCAGCTCACCACCGGAAAGGGCATGAACAACTG
GACAACATTCGATGCAAGCTTTCTAGACCAT
BO05827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RA | 2727 | CG18659-PA | 1254..2724 | 43..1513 | 7340 | 99.9 | Plus |
| CG18659-RI | 2721 | CG18659-PI | 1254..2718 | 43..1513 | 7215 | 99.5 | Plus |
| CG18659-RC | 2694 | CG18659-PC | 1257..2691 | 79..1513 | 7175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-RE | 3655 | CG18659-RE | 1758..3254 | 17..1513 | 7485 | 100 | Plus |
| CG18659-RA | 3519 | CG18659-RA | 1648..3118 | 43..1513 | 7340 | 99.9 | Plus |
| CG18659-RI | 3513 | CG18659-RI | 1648..3112 | 43..1513 | 7215 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9125551..9126067 | 595..79 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 9124734..9125220 | 1082..596 | 2390 | 99.4 | Minus |
| 2R | 25286936 | 2R | 9123705..9124147 | 1513..1071 | 2215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:19:18 has no hits.
BO05827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:17 Download gff for
BO05827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 1..1500 | 17..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:34 Download gff for
BO05827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 626..2133 | 10..1518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:56 Download gff for
BO05827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1763..3254 | 22..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:17 Download gff for
BO05827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RB | 626..2133 | 10..1518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:51 Download gff for
BO05827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18659-RE | 1763..3254 | 22..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:51 Download gff for
BO05827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9127027..9127051 | 22..46 | 100 | | Minus |
| 2R | 9123702..9124145 | 1073..1515 | 99 | <- | Minus |
| 2R | 9124744..9125220 | 596..1072 | 100 | <- | Minus |
| 2R | 9125551..9126066 | 80..595 | 100 | <- | Minus |
| 2R | 9126181..9126213 | 47..79 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:56 Download gff for
BO05827.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5011207..5011650 | 1073..1515 | 99 | <- | Minus |
| arm_2R | 5012249..5012725 | 596..1072 | 100 | <- | Minus |
| arm_2R | 5013056..5013571 | 80..595 | 100 | <- | Minus |
| arm_2R | 5013686..5013718 | 47..79 | 100 | <- | Minus |
| arm_2R | 5014532..5014556 | 22..46 | 100 | | Minus |
BO05827.pep Sequence
Translation from 16 to 1531
> BO05827.pep
MFIPTHLICNTNPAVKSAVKSVKEGSRGMKTAYKGFKTKLRENGNQFGGT
HFHFGLGSPNHSDRPDGTSGGYVRGGKAIGAAHHSAPSSPVTSKRLDGIA
SVTGSSGSGGSGAREPREFLRRGPVPLAMSSSSSHIQPNGHAYGASAGAH
YGHHLAASPAVSSASSLCSSSEMNLSQELQNHPLFKTPAVDRSLKPNAEH
RRGAAPPARPPPPQSTPASYYNHPYAAHPHVESKPPRHTSTPTRPRQPLP
TADSSSFDSPPDVQSPPIPPRRQGSSNAIVAATAAAVSAEISKLERNCWK
DEPGNDSVRSSNASSSSATSSSSGASFVTAASTFSHLNVSDPPIPTPRAK
REQQQPLEDSMNDLISLDDSNNTSFDLEDFDPLNQNARPLPPLSTAFAKK
CSTLPAGVNSSVVASSVSNPLYPYFAPKHMATVAAVTGRTPPMHPPPQIQ
RNTIAAKPDDDFELLRKYGLDQFTLNANGTEKSQQLTTGKGMNNWTTFDA
SFLDH
BO05827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18659-PA | 908 | CG18659-PA | 420..908 | 11..499 | 2570 | 100 | Plus |
| CG18659-PI | 906 | CG18659-PI | 420..906 | 11..499 | 2547 | 99.6 | Plus |
| CG18659-PC | 897 | CG18659-PC | 413..897 | 15..499 | 2521 | 98.8 | Plus |
| CG18659-PD | 749 | CG18659-PD | 420..602 | 11..193 | 954 | 100 | Plus |
| CG18659-PF | 607 | CG18659-PF | 413..592 | 15..194 | 906 | 96.1 | Plus |
| CG18659-PD | 749 | CG18659-PD | 537..749 | 286..499 | 805 | 74.4 | Plus |
