Clone Sequence Records
BO05829.5prime Sequence
783 bp (754 high quality bases) assembled on 2005-12-02
> BO05829.5prime
GAAGTTATCAGTCGACATGTCGCTTAAAAAGGCTCTCGACGATTGCATGA
TCGATTTCGATCGCTGTGTGCTGGTCACCGATCTTCTGGAGGAGTACAAA
CTGTCCTACAAGGAGGTGAACGATGTGCTGGAGGCCTACATCAAAGAGCA
GGAACCTGCCACAAAATTCGAGAAGAGATTTCTAGTCCATGGCAAGCGTA
AAACGCAAGGATCCGATTCCGGCGAAGATCTGTACTCTGTGGTGCTGGAG
AGCAGGATGCAGGATTGGCTGGCCAAAGTCCAGGATGCGGAGTCTCAGCT
GTATAGTGTGAAAATAGCCGGTGGCACCAAAGCGCCGGCTGCGATTTTCA
AGCCCATGCAGCATTTGGAGGTGAAGTTGGCAAAAGTGGAGCAGCGTCCT
GGAGCGGGAAAGATAGTGCCCAGTGCAAATGGGACGACTCCCCACAATGG
AGTCAAATCTGAACCCACTAAATCGGAGCCATCAAAGTCTGCGGTTAAGT
TGGAGCCTTCAAAATCTTCACTTAAATCAGAGCCAGCAAAGTCGAAGGCG
GAAAAGCCAGTGGCCAGCAAGTCCTCTCCGGAGGATAAGAAGACCTCGCC
CAAGGAACAGGCCTCTAAAGCCAAGCCTGCAGCAGCCAAAAAGGGTAGCA
TTAATAGCTTCTTCACAGCGGCGGCCAGCAAGCCAAAGGATGTCAAAGCC
ACGCCCAGCAAATCGACGTCCGGCACCGTGGACAACTTCTTTAAGAAGCA
ACCGGCAGGCGCCAAGAAGTCGCCACCGGAATC
BO05829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3975-PA | 1296 | CG3975-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 36..808 | 11..783 | 3850 | 99.9 | Plus |
| Pol32-RB | 1486 | CG3975-RB | 36..808 | 11..783 | 3850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15255497..15256269 | 783..11 | 3850 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:01:23 has no hits.
BO05829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:28 Download gff for
BO05829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:21 Download gff for
BO05829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:16 Download gff for
BO05829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 33..808 | 7..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:41 Download gff for
BO05829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 33..808 | 7..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:41 Download gff for
BO05829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15255497..15256272 | 7..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:16 Download gff for
BO05829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15255497..15256272 | 7..783 | 99 | | Minus |
BO05829.3prime Sequence
926 bp (723 high quality bases) assembled on 2005-12-02
> BO05829.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGAAAAAAAGTTCATAATGCCAGCTT
GTTTGGTTTTCGGCGCATCCTTTCCAGCTTTCGCGGCTGAAGGCGGTGAC
TTCTTTTTGTTGACGGGAGCAGCAGCCTTTGGGGAAACCTTTTTGTTGGC
AGGCTGGGCTTTTGTTGGTTTACGCTGCGTAATGACGAAGCCATCTTCAT
CCAGATAGGTTTCATTGGCCGGTTCCGTATCCATTTTCTCATCCAATGCG
ATGGTCTCTTCATCGGCGGACTTCTTGGGCGGCTGCTCCTCGTCCTCAGA
GTCGCTGATTCGTCGCCGCTTGGAGGACGAGGCCTTTTCCTGATCGGAGT
CGTTGTCCGACTCGATCACCTTCCGCCGCAGCATGTCCAGCTTTTCCTCC
TCGTCGGACGATTCGGCACTCTCCTCGTCGAACAGTTGCATGGAAGTGTT
TGCCGTTGTTGGCTTTTTGGTGGGACTGGGGGATTTCTTTTTCGAGGCTT
CCTTTTTGTTTGAATTGGAAGCATCTTTCTTCGATTTATCTTCGGATTCC
GGTGGCGACTTCTTGGCGCCTGCCGGTTGCTTCTTAAAGAAGTTGTCCAC
GGTGCCGGACGTCGATTTGCTGGGCGTGGCTTTGACATCCTTTGGCTTGC
TGGCCGCCGCTGTGAAGAAGCTATTAATGCTACCCTTTTTGGCTGCTGCA
GGCTTGGCTTTAGAGGCCTGTTCCTTGGGCGAGGTCTTCTTATCCTCCGG
AGAGGACTTGCTGGCCACTGGCTTTTCCGCCTTCGACTTTGCTGGCTCTG
ATTTAAGTGAAGATTTTGAAGGCTCCAACTTAACCGCAGACTTTGATGGC
TCCGATTTAGTGGGGTCAGATTTGACTCCATTGTGGGGAGTCGTCCCATT
TGCACTGGGCACTATCTTTTCCGCTC
BO05829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3975-PA | 1296 | CG3975-RA | 386..1293 | 926..19 | 4490 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 427..1334 | 926..19 | 4510 | 99.8 | Minus |
| Pol32-RB | 1486 | CG3975-RB | 427..1334 | 926..19 | 4510 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15254971..15255878 | 19..926 | 4510 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:03:02 has no hits.
BO05829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:27 Download gff for
BO05829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 386..1296 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:19 Download gff for
BO05829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-PA | 386..1296 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:56 Download gff for
BO05829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 427..1337 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:46 Download gff for
BO05829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 427..1337 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:46 Download gff for
BO05829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15254967..15255878 | 15..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:56 Download gff for
BO05829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15254967..15255878 | 15..926 | 99 | | Plus |
BO05829.complete Sequence
1327 bp (1327 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630161
> BO05829.complete
GAAGTTATCAGTCGACATGTCGCTTAAAAAGGCTCTCGACGATTGCATGA
TCGATTTCGATCGCTGTGTGCTGGTCACCGATCTTCTGGAGGAGTACAAA
CTGTCCTACAAGGAGGTGAACGATGTGCTGGAGGCCTACATCAAAGAGCA
GGAACCTGCCACAAAATTCGAGAAGAGATTTCTAGTCCATGGCAAGCGTA
AAACGCAAGGATCCGATTCCGGCGAAGATCTGTACTCTGTGGTGCTGGAG
AGCAGGATGCAGGATTGGCTGGCCAAAGTCCAGGATGCGGAGTCTCAGCT
GTATAGTGTGAAAATAGCCGGTGGCACCAAAGCGCCGGCTGCGATTTTCA
AGCCCATGCAGCATTTGGAGGTGAAGTTGGCAAAAGTGGAGCAGCGTCCT
GGAGCGGGAAAGATAGTGCCCAGTGCAAATGGGACGACTCCCCACAATGG
AGTCAAATCTGAACCCACTAAATCGGAGCCATCAAAGTCTGCGGTTAAGT
TGGAGCCTTCAAAATCTTCACTTAAATCAGAGCCAGCAAAGTCGAAGGCG
GAAAAGCCAGTGGCCAGCAAGTCCTCTCCGGAGGATAAGAAGACCTCGCC
CAAGGAACAGGCCTCTAAAGCCAAGCCTGCAGCAGCCAAAAAGGGTAGCA
TTAATAGCTTCTTCACAGCGGCGGCCAGCAAGCCAAAGGATGTCAAAGCC
ACGCCCAGCAAATCGACGTCCGGCACCGTGGACAACTTCTTTAAGAAGCA
ACCGGCAGGCGCCAAGAAGTCGCCACCGGAATCCGAAGATAAATCGAAGA
AAGATGCTTCCAATTCAAACAAAAAGGAAGCCTCGAAAAAGAAATCCCCC
AGTCCCACCAAAAAGCCAACAACGGCAAACACTTCCATGCAACTGTTCGA
CGAGGAGAGTGCCGAATCGTCCGACGAGGAGGAAAAGCTGGACATGCTGC
GGCGGAAGGTGATCGAGTCGGACAACGACTCCGATCAGGAAAAGGCCTCG
TCCTCCAAGCGGCGACGAATCAGCGACTCTGAGGACGAGGAGCAGCCGCC
CAAGAAGTCCGCCGATGAAGAGACCATCGCATTGGATGAGAAAATGGATA
CGGAACCGGCCAATGAAACCTATCTGGATGAAGATGGCTTCGTCATTACG
CAGCGTAAACCAACAAAAGCCCAGCCTGCCAACAAAAAGGTTTCCCCAAA
GGCTGCTGCTCCCGTCAACAAAAAGAAGTCACCGCCTTCAGCCGCGAAAG
CTGGAAAGGATGCGCCGAAAACCAAACAAGCTGGCATTATGAACTTTTTT
TCCAAGAAGGCAAGCTTTCTAGACCAT
BO05829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1296 | CG3975-PC | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| Pol32-RB | 1296 | CG3975-PB | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-RC | 1391 | CG3975-RC | 36..1334 | 11..1309 | 6480 | 99.9 | Plus |
| Pol32-RB | 1486 | CG3975-RB | 36..1334 | 11..1309 | 6480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15254971..15256269 | 1309..11 | 6480 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:50:51 has no hits.
BO05829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:18 Download gff for
BO05829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-RA | 1..1296 | 17..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:37 Download gff for
BO05829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-RA | 33..1337 | 7..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:38:39 Download gff for
BO05829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 42..1334 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:18 Download gff for
BO05829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3975-RA | 33..1337 | 7..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:43:57 Download gff for
BO05829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pol32-RB | 42..1334 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:43:57 Download gff for
BO05829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15254969..15256263 | 17..1311 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:38:39 Download gff for
BO05829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15254969..15256263 | 17..1311 | 99 | | Minus |
BO05829.pep Sequence
Translation from 16 to 1327
> BO05829.pep
MSLKKALDDCMIDFDRCVLVTDLLEEYKLSYKEVNDVLEAYIKEQEPATK
FEKRFLVHGKRKTQGSDSGEDLYSVVLESRMQDWLAKVQDAESQLYSVKI
AGGTKAPAAIFKPMQHLEVKLAKVEQRPGAGKIVPSANGTTPHNGVKSEP
TKSEPSKSAVKLEPSKSSLKSEPAKSKAEKPVASKSSPEDKKTSPKEQAS
KAKPAAAKKGSINSFFTAAASKPKDVKATPSKSTSGTVDNFFKKQPAGAK
KSPPESEDKSKKDASNSNKKEASKKKSPSPTKKPTTANTSMQLFDEESAE
SSDEEEKLDMLRRKVIESDNDSDQEKASSSKRRRISDSEDEEQPPKKSAD
EETIALDEKMDTEPANETYLDEDGFVITQRKPTKAQPANKKVSPKAAAPV
NKKKSPPSAAKAGKDAPKTKQAGIMNFFSKKASFLDH
BO05829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pol32-PC | 431 | CG3975-PC | 1..431 | 1..431 | 2172 | 100 | Plus |
| Pol32-PB | 431 | CG3975-PB | 1..431 | 1..431 | 2172 | 100 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 135..441 | 89..432 | 184 | 25.6 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 135..441 | 89..432 | 184 | 25.6 | Plus |
| Nopp140-PA | 720 | CG7421-PA | 135..441 | 89..432 | 184 | 25.6 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 82..391 | 135..421 | 177 | 25.4 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 82..391 | 135..421 | 177 | 25.4 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 161..554 | 32..432 | 175 | 23.3 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 161..554 | 32..432 | 166 | 23.3 | Plus |
