Clone Sequence Records
BO05834.3prime Sequence
773 bp (759 high quality bases) assembled on 2005-12-02
> BO05834.3prime
ATGGTCTAGAAAGCTTGCCAACTTTCCGGTTAGTTCGGGCACGGCCTTGA
AAAGATCTGCCACGATGCCAATATCGGCGACCTGGAAGATGGGCGCTTCG
GGATCCTTGTTGATGGCCACAATCGTCTTGGAGTCCTTCATGCCAGCCAA
GTGCTGGATGGCGCCTGAGATTCCGACAGCGATGTACAGCTCGGGAGCCA
CAATCTTGCCGGTCTGACCGATCTGCAGATCATTGGGCACAAATCCAGCA
TCCACGGCAGCACGAGAGGCACCCACAGCGGCACCAAACTTATCGGCCAG
ATCATACAGCAGCTTGAAGTTATCTCCGGACTTCAGGCCCCGTCCTCCGG
ACACAATAACCTTGGCTCCGGCCAGCTCGGGGCGATCGGACTTGGTCAGC
TCCTGGGATACAAATTCGGACAGGCTGCTGGCGAAGTCACCAGCTGGTGC
CTGCTCCACGGCTCCACTTCCACCGCTGGTGGCTGCCGGTGGGAAATTGG
TGCTCCTTACGGTGATCACCTTAACGGCGTCCTTGGATTTCAGGGTGAGG
ATAGCATTTCCGGCGTAGATAGTGCGCACAAAGGTGTCGTCCGACTTAAC
ATCGATGATCTCCGAAATGGGCGACACATCCAGCTTGGCCGCCACGCGTG
GCAGCACGTTTTTGCCGAAAGCCGAAGCTCCGGCCAGGATGTGGGTGAAC
TTGAACTGAGACTGGGCGGCCAGGACCAATGGGGTCAGCGACTCCGCGGT
AAATCCGTTGAAGGCGGCATTTT
BO05834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8996-PA | 993 | wal-RA | 236..990 | 773..19 | 3775 | 100 | Minus |
CG8996-PB | 993 | wal-RB | 236..990 | 773..19 | 3775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 1579 | CG8996-RB | 312..1066 | 773..19 | 3775 | 100 | Minus |
wal-RA | 1212 | CG8996-RA | 312..1066 | 773..19 | 3775 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11689082..11689836 | 19..773 | 3775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:57:22 has no hits.
BO05834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:35 Download gff for
BO05834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-PA | 236..993 | 15..773 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:30 Download gff for
BO05834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8996-PB | 236..993 | 15..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:53 Download gff for
BO05834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 312..1070 | 14..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:10 Download gff for
BO05834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 312..1070 | 14..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:10 Download gff for
BO05834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11689078..11689836 | 14..773 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:53 Download gff for
BO05834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7576583..7577341 | 14..773 | 99 | | Plus |
BO05834.5prime Sequence
907 bp (705 high quality bases) assembled on 2005-11-29
> BO05834.5prime
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTNCAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTC
GGAATCTCAGGGCGCATCCAGCACTGGGCTGGCATGAAGGACTCCCAGAC
GATTGTG
BO05834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8996-PA | 993 | wal-RA | 1..845 | 17..861 | 4181 | 99.7 | Plus |
CG8996-PB | 993 | wal-RB | 1..845 | 17..861 | 4181 | 99.7 | Plus |
CG8996-PA | 993 | wal-RA | 849..891 | 865..907 | 165 | 95.3 | Plus |
CG8996-PB | 993 | wal-RB | 849..891 | 865..907 | 165 | 95.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 1579 | CG8996-RB | 77..967 | 17..907 | 4354 | 99.3 | Plus |
wal-RA | 1212 | CG8996-RA | 77..967 | 17..907 | 4354 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11689181..11689888 | 907..200 | 3439 | 99 | Minus |
2R | 25286936 | 2R | 11690445..11690586 | 200..59 | 710 | 100 | Minus |
2R | 25286936 | 2R | 11690678..11690719 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:48:52 has no hits.
BO05834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:36 Download gff for
BO05834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:31 Download gff for
BO05834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8996-PB | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:36 Download gff for
BO05834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 69..967 | 9..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:42:30 Download gff for
BO05834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 69..967 | 9..907 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:42:30 Download gff for
BO05834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11689181..11689888 | 200..907 | 99 | <- | Minus |
2R | 11690446..11690586 | 59..199 | 100 | <- | Minus |
2R | 11690678..11690727 | 9..58 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:36 Download gff for
BO05834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7576686..7577393 | 200..907 | 99 | <- | Minus |
arm_2R | 7577951..7578091 | 59..199 | 100 | <- | Minus |
arm_2R | 7578183..7578232 | 9..58 | 92 | | Minus |
BO05834.complete Sequence
1024 bp (1024 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630162
> BO05834.complete
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTCAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTC
GGAATCTCAGGCGCCATCCAGCACTTGGCTGGCATGAAGGACTCCAAGAC
GATTGTGGCCATCAACAAGGATCCCGAAGCGCCCATCTTCCAGGTCGCCG
ATATTGGCATCGTGGCAGATCTTTTCAAGGCCGTGCCCGAACTAACCGGA
AAGTTGGCAAGCTTTCTAGACCAT
BO05834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 993 | CG8996-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
wal-RA | 993 | CG8996-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-RB | 1579 | CG8996-RB | 77..1066 | 17..1006 | 4950 | 100 | Plus |
wal-RA | 1212 | CG8996-RA | 77..1066 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11689082..11689888 | 1006..200 | 4035 | 100 | Minus |
2R | 25286936 | 2R | 11690445..11690586 | 200..59 | 710 | 100 | Minus |
2R | 25286936 | 2R | 11690678..11690719 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:22:50 has no hits.
BO05834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:19 Download gff for
BO05834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RB | 1..993 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:39 Download gff for
BO05834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RB | 24..1025 | 9..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:18 Download gff for
BO05834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 82..1066 | 22..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:19 Download gff for
BO05834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RB | 24..1025 | 9..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:21 Download gff for
BO05834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wal-RA | 82..1066 | 22..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:21 Download gff for
BO05834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11689080..11689888 | 200..1008 | 99 | <- | Minus |
2R | 11690446..11690586 | 59..199 | 100 | <- | Minus |
2R | 11690678..11690714 | 22..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:18 Download gff for
BO05834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7576585..7577393 | 200..1008 | 99 | <- | Minus |
arm_2R | 7577951..7578091 | 59..199 | 100 | <- | Minus |
arm_2R | 7578183..7578219 | 22..58 | 100 | | Minus |
BO05834.pep Sequence
Translation from 16 to 1024
> BO05834.pep
MFASNTRNLMRSSILQRCKSTLVVAEHNNEVLNPITLNTISAAKKIGGDV
TVLVAGTKCGPASEALSKVDGVTKVLVAENAAFNGFTAESLTPLVLAAQS
QFKFTHILAGASAFGKNVLPRVAAKLDVSPISEIIDVKSDDTFVRTIYAG
NAILTLKSKDAVKVITVRSTNFPPAATSGGSGAVEQAPAGDFASSLSEFV
SQELTKSDRPELAGAKVIVSGGRGLKSGDNFKLLYDLADKFGAAVGASRA
AVDAGFVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
KDPEAPIFQVADIGIVADLFKAVPELTGKLASFLDH
BO05834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wal-PB | 330 | CG8996-PB | 1..330 | 1..330 | 1621 | 100 | Plus |
wal-PA | 330 | CG8996-PA | 1..330 | 1..330 | 1621 | 100 | Plus |