Clone BO05834 Report

Search the DGRC for BO05834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptwal-RA
Protein status:BO05834.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO05834.3prime Sequence

773 bp (759 high quality bases) assembled on 2005-12-02

> BO05834.3prime
ATGGTCTAGAAAGCTTGCCAACTTTCCGGTTAGTTCGGGCACGGCCTTGA
AAAGATCTGCCACGATGCCAATATCGGCGACCTGGAAGATGGGCGCTTCG
GGATCCTTGTTGATGGCCACAATCGTCTTGGAGTCCTTCATGCCAGCCAA
GTGCTGGATGGCGCCTGAGATTCCGACAGCGATGTACAGCTCGGGAGCCA
CAATCTTGCCGGTCTGACCGATCTGCAGATCATTGGGCACAAATCCAGCA
TCCACGGCAGCACGAGAGGCACCCACAGCGGCACCAAACTTATCGGCCAG
ATCATACAGCAGCTTGAAGTTATCTCCGGACTTCAGGCCCCGTCCTCCGG
ACACAATAACCTTGGCTCCGGCCAGCTCGGGGCGATCGGACTTGGTCAGC
TCCTGGGATACAAATTCGGACAGGCTGCTGGCGAAGTCACCAGCTGGTGC
CTGCTCCACGGCTCCACTTCCACCGCTGGTGGCTGCCGGTGGGAAATTGG
TGCTCCTTACGGTGATCACCTTAACGGCGTCCTTGGATTTCAGGGTGAGG
ATAGCATTTCCGGCGTAGATAGTGCGCACAAAGGTGTCGTCCGACTTAAC
ATCGATGATCTCCGAAATGGGCGACACATCCAGCTTGGCCGCCACGCGTG
GCAGCACGTTTTTGCCGAAAGCCGAAGCTCCGGCCAGGATGTGGGTGAAC
TTGAACTGAGACTGGGCGGCCAGGACCAATGGGGTCAGCGACTCCGCGGT
AAATCCGTTGAAGGCGGCATTTT

BO05834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8996-PA 993 wal-RA 236..990 773..19 3775 100 Minus
CG8996-PB 993 wal-RB 236..990 773..19 3775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 312..1066 773..19 3775 100 Minus
wal-RA 1212 CG8996-RA 312..1066 773..19 3775 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689082..11689836 19..773 3775 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:57:22 has no hits.

BO05834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:35 Download gff for BO05834.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-PA 236..993 15..773 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:30 Download gff for BO05834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8996-PB 236..993 15..773 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:53 Download gff for BO05834.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 312..1070 14..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:10 Download gff for BO05834.3prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 312..1070 14..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:10 Download gff for BO05834.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11689078..11689836 14..773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:53 Download gff for BO05834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576583..7577341 14..773 99   Plus

BO05834.5prime Sequence

907 bp (705 high quality bases) assembled on 2005-11-29

> BO05834.5prime
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTNCAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTC
GGAATCTCAGGGCGCATCCAGCACTGGGCTGGCATGAAGGACTCCCAGAC
GATTGTG

BO05834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8996-PA 993 wal-RA 1..845 17..861 4181 99.7 Plus
CG8996-PB 993 wal-RB 1..845 17..861 4181 99.7 Plus
CG8996-PA 993 wal-RA 849..891 865..907 165 95.3 Plus
CG8996-PB 993 wal-RB 849..891 865..907 165 95.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 77..967 17..907 4354 99.3 Plus
wal-RA 1212 CG8996-RA 77..967 17..907 4354 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689181..11689888 907..200 3439 99 Minus
2R 25286936 2R 11690445..11690586 200..59 710 100 Minus
2R 25286936 2R 11690678..11690719 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:48:52 has no hits.

BO05834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:36 Download gff for BO05834.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:31 Download gff for BO05834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8996-PB 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:36 Download gff for BO05834.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 69..967 9..907 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:42:30 Download gff for BO05834.5prime
Subject Subject Range Query Range Percent Splice Strand
wal-RA 69..967 9..907 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:42:30 Download gff for BO05834.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11689181..11689888 200..907 99 <- Minus
2R 11690446..11690586 59..199 100 <- Minus
2R 11690678..11690727 9..58 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:36 Download gff for BO05834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576686..7577393 200..907 99 <- Minus
arm_2R 7577951..7578091 59..199 100 <- Minus
arm_2R 7578183..7578232 9..58 92   Minus

BO05834.complete Sequence

1024 bp (1024 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630162

> BO05834.complete
GAAGTTATCAGTCGACATGTTCGCCAGCAACACGCGTAATCTTATGCGCA
GCAGCATTTTGCAGCGATGCAAGAGCACTTTGGTGGTGGCTGAGCACAAC
AATGAGGTACTCAATCCGATCACCCTGAACACCATCTCTGCGGCCAAGAA
GATCGGTGGTGACGTCACAGTTCTGGTGGCAGGCACAAAATGCGGACCCG
CTTCCGAGGCTCTTTCCAAGGTGGATGGCGTGACCAAGGTTCTGGTGGCC
GAAAATGCCGCCTTCAACGGATTTACCGCGGAGTCGCTGACCCCATTGGT
CCTGGCCGCCCAGTCTCAGTTCAAGTTCACCCACATCCTGGCCGGAGCTT
CGGCTTTCGGCAAAAACGTGCTGCCACGCGTGGCGGCCAAGCTGGATGTG
TCGCCCATTTCGGAGATCATCGATGTTAAGTCGGACGACACCTTTGTGCG
CACTATCTACGCCGGAAATGCTATCCTCACCCTGAAATCCAAGGACGCCG
TTAAGGTGATCACCGTAAGGAGCACCAATTTCCCACCGGCAGCCACCAGC
GGTGGAAGTGGAGCCGTGGAGCAGGCACCAGCTGGTGACTTCGCCAGCAG
CCTGTCCGAATTTGTATCCCAGGAGCTGACCAAGTCCGATCGCCCCGAGC
TGGCCGGAGCCAAGGTTATTGTGTCCGGAGGACGGGGCCTGAAGTCCGGA
GATAACTTCAAGCTGCTGTATGATCTGGCCGATAAGTTTGGTGCCGCTGT
GGGTGCCTCTCGTGCTGCCGTGGATGCTGGATTTGTGCCCAATGATCTGC
AGATCGGTCAGACCGGCAAGATTGTGGCTCCCGAGCTGTACATCGCTGTC
GGAATCTCAGGCGCCATCCAGCACTTGGCTGGCATGAAGGACTCCAAGAC
GATTGTGGCCATCAACAAGGATCCCGAAGCGCCCATCTTCCAGGTCGCCG
ATATTGGCATCGTGGCAGATCTTTTCAAGGCCGTGCCCGAACTAACCGGA
AAGTTGGCAAGCTTTCTAGACCAT

BO05834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 993 CG8996-PB 1..990 17..1006 4950 100 Plus
wal-RA 993 CG8996-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
wal-RB 1579 CG8996-RB 77..1066 17..1006 4950 100 Plus
wal-RA 1212 CG8996-RA 77..1066 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11689082..11689888 1006..200 4035 100 Minus
2R 25286936 2R 11690445..11690586 200..59 710 100 Minus
2R 25286936 2R 11690678..11690719 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:22:50 has no hits.

BO05834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:19 Download gff for BO05834.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 1..993 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:39 Download gff for BO05834.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 24..1025 9..1011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:18 Download gff for BO05834.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 82..1066 22..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:19 Download gff for BO05834.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RB 24..1025 9..1011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:21 Download gff for BO05834.complete
Subject Subject Range Query Range Percent Splice Strand
wal-RA 82..1066 22..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:21 Download gff for BO05834.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11689080..11689888 200..1008 99 <- Minus
2R 11690446..11690586 59..199 100 <- Minus
2R 11690678..11690714 22..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:18 Download gff for BO05834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7576585..7577393 200..1008 99 <- Minus
arm_2R 7577951..7578091 59..199 100 <- Minus
arm_2R 7578183..7578219 22..58 100   Minus

BO05834.pep Sequence

Translation from 16 to 1024

> BO05834.pep
MFASNTRNLMRSSILQRCKSTLVVAEHNNEVLNPITLNTISAAKKIGGDV
TVLVAGTKCGPASEALSKVDGVTKVLVAENAAFNGFTAESLTPLVLAAQS
QFKFTHILAGASAFGKNVLPRVAAKLDVSPISEIIDVKSDDTFVRTIYAG
NAILTLKSKDAVKVITVRSTNFPPAATSGGSGAVEQAPAGDFASSLSEFV
SQELTKSDRPELAGAKVIVSGGRGLKSGDNFKLLYDLADKFGAAVGASRA
AVDAGFVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
KDPEAPIFQVADIGIVADLFKAVPELTGKLASFLDH

BO05834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
wal-PB 330 CG8996-PB 1..330 1..330 1621 100 Plus
wal-PA 330 CG8996-PA 1..330 1..330 1621 100 Plus