Clone Sequence Records
BO05835.5prime Sequence
467 bp (466 high quality bases) assembled on 2005-11-29
> BO05835.5prime
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GGCAAGCTTTCTAGACC
BO05835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4143-PA | 438 | mbf1-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
CG4143-PB | 438 | mbf1-RB | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RC | 1225 | CG4143-RC | 249..683 | 17..451 | 2175 | 100 | Plus |
mbf1-RB | 1648 | CG4143-RB | 209..643 | 17..451 | 2175 | 100 | Plus |
mbf1-RA | 1085 | CG4143-RA | 109..543 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16575187..16575347 | 141..301 | 805 | 100 | Plus |
3L | 28110227 | 3L | 16575717..16575866 | 302..451 | 750 | 100 | Plus |
3L | 28110227 | 3L | 16574853..16574976 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:58:17 has no hits.
BO05835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:38 Download gff for
BO05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-PB | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:34 Download gff for
BO05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4143-PB | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:20 Download gff for
BO05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..547 | 9..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:17 Download gff for
BO05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..547 | 9..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:17 Download gff for
BO05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16574853..16574976 | 17..140 | 100 | -> | Plus |
3L | 16575187..16575347 | 141..301 | 100 | -> | Plus |
3L | 16575717..16575870 | 302..455 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:20 Download gff for
BO05835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16567953..16568076 | 17..140 | 100 | -> | Plus |
arm_3L | 16568287..16568447 | 141..301 | 100 | -> | Plus |
arm_3L | 16568817..16568970 | 302..455 | 98 | | Plus |
BO05835.3prime Sequence
467 bp (466 high quality bases) assembled on 2005-12-02
> BO05835.3prime
ATGGTCTAGAAAGCTTGCCTTTTTACCGGGAGGTGCTATTGGTTGGCCGC
GCTCCTTGCCGCGCAGCTTAATGCCGAGAACGCGTTCCATTTTACCCAGA
ATCAAGTTGTTTGGAATACCGCGACCGGCCTCGTAGTCGGTTACCACTTG
CTGCTTTTCGCAGATTTTAGTTGCCAGGTCCTTTTGGCTGAGGCCCTTGC
TCTGTCGTCCCTGCTGGATGAGCTTGCCCACATCGAGGGGAATCTTGTCG
TGGCGCAGCTCCTCGGTCTCGCGGTCTAGTTTGGCAGTGTTCTTGGTGGT
CACATGCTGCTTGTTGGTGCCAGCACCATACTTCTGTTGGGTATCCACGG
CGACTCCTTGACGGCGTGCCTGGTTGACCGCCGATTCCGTCTTGAGGGTC
GACGATTTCGGTGCTTTCTTCCGAAGAACAGTCACAGAGTCCCAGTCCGA
CATGTCGACTGATAACT
BO05835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4143-PA | 438 | mbf1-RA | 1..435 | 453..19 | 2175 | 100 | Minus |
CG4143-PB | 438 | mbf1-RB | 1..435 | 453..19 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RC | 1225 | CG4143-RC | 249..683 | 453..19 | 2175 | 100 | Minus |
mbf1-RB | 1648 | CG4143-RB | 209..643 | 453..19 | 2175 | 100 | Minus |
mbf1-RA | 1085 | CG4143-RA | 109..543 | 453..19 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16575187..16575347 | 329..169 | 805 | 100 | Minus |
3L | 28110227 | 3L | 16575717..16575866 | 168..19 | 750 | 100 | Minus |
3L | 28110227 | 3L | 16574853..16574976 | 453..330 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:39:46 has no hits.
BO05835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:37 Download gff for
BO05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-PB | 1..438 | 16..453 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:32 Download gff for
BO05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4143-PB | 1..438 | 16..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:47 Download gff for
BO05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..547 | 15..461 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:48 Download gff for
BO05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 101..547 | 15..461 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:48 Download gff for
BO05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16574853..16574976 | 330..453 | 100 | -> | Minus |
3L | 16575187..16575347 | 169..329 | 100 | -> | Minus |
3L | 16575717..16575870 | 15..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:47 Download gff for
BO05835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16567953..16568076 | 330..453 | 100 | -> | Minus |
arm_3L | 16568287..16568447 | 169..329 | 100 | -> | Minus |
arm_3L | 16568817..16568970 | 15..168 | 98 | | Minus |
BO05835.complete Sequence
469 bp (469 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630163
> BO05835.complete
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GGCAAGCTTTCTAGACCAT
BO05835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RC | 438 | CG4143-PC | 1..435 | 17..451 | 2175 | 100 | Plus |
mbf1-RB | 438 | CG4143-PB | 1..435 | 17..451 | 2175 | 100 | Plus |
mbf1-RA | 438 | CG4143-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-RC | 1225 | CG4143-RC | 249..683 | 17..451 | 2175 | 100 | Plus |
mbf1-RB | 1648 | CG4143-RB | 209..643 | 17..451 | 2175 | 100 | Plus |
mbf1-RA | 1085 | CG4143-RA | 109..543 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16575187..16575347 | 141..301 | 805 | 100 | Plus |
3L | 28110227 | 3L | 16575717..16575866 | 302..451 | 750 | 100 | Plus |
3L | 28110227 | 3L | 16574853..16574976 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:33:39 has no hits.
BO05835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:41 Download gff for
BO05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RB | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:07 Download gff for
BO05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RB | 79..517 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:16 Download gff for
BO05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 109..543 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:41 Download gff for
BO05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RB | 79..517 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:06 Download gff for
BO05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbf1-RA | 109..543 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:06 Download gff for
BO05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16574853..16574976 | 17..140 | 100 | -> | Plus |
3L | 16575187..16575347 | 141..301 | 100 | -> | Plus |
3L | 16575717..16575866 | 302..453 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:16 Download gff for
BO05835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16567953..16568076 | 17..140 | 100 | -> | Plus |
arm_3L | 16568287..16568447 | 141..301 | 100 | -> | Plus |
arm_3L | 16568817..16568966 | 302..453 | 98 | | Plus |
BO05835.pep Sequence
Translation from 16 to 469
> BO05835.pep
MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQH
VTTKNTAKLDRETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEK
QQVVTDYEAGRGIPNNLILGKMERVLGIKLRGKERGQPIAPPGKKASFLD
H
BO05835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbf1-PC | 145 | CG4143-PC | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PB | 145 | CG4143-PB | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PA | 145 | CG4143-PA | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PD | 145 | CG4143-PD | 1..145 | 1..145 | 738 | 100 | Plus |
mbf1-PE | 188 | CG4143-PE | 1..145 | 1..145 | 738 | 100 | Plus |