Clone BO05835 Report

Search the DGRC for BO05835

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptmbf1-RA
Protein status:BO05835.pep: validated full length
Sequenced Size:469

Clone Sequence Records

BO05835.5prime Sequence

467 bp (466 high quality bases) assembled on 2005-11-29

> BO05835.5prime
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GGCAAGCTTTCTAGACC

BO05835.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4143-PA 438 mbf1-RA 1..435 17..451 2175 100 Plus
CG4143-PB 438 mbf1-RB 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..683 17..451 2175 100 Plus
mbf1-RB 1648 CG4143-RB 209..643 17..451 2175 100 Plus
mbf1-RA 1085 CG4143-RA 109..543 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 141..301 805 100 Plus
3L 28110227 3L 16575717..16575866 302..451 750 100 Plus
3L 28110227 3L 16574853..16574976 17..140 620 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:58:17 has no hits.

BO05835.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:38 Download gff for BO05835.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-PB 1..438 17..454 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:34 Download gff for BO05835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4143-PB 1..438 17..454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:20 Download gff for BO05835.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..547 9..455 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:17 Download gff for BO05835.5prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..547 9..455 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:17 Download gff for BO05835.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16574853..16574976 17..140 100 -> Plus
3L 16575187..16575347 141..301 100 -> Plus
3L 16575717..16575870 302..455 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:20 Download gff for BO05835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16567953..16568076 17..140 100 -> Plus
arm_3L 16568287..16568447 141..301 100 -> Plus
arm_3L 16568817..16568970 302..455 98   Plus

BO05835.3prime Sequence

467 bp (466 high quality bases) assembled on 2005-12-02

> BO05835.3prime
ATGGTCTAGAAAGCTTGCCTTTTTACCGGGAGGTGCTATTGGTTGGCCGC
GCTCCTTGCCGCGCAGCTTAATGCCGAGAACGCGTTCCATTTTACCCAGA
ATCAAGTTGTTTGGAATACCGCGACCGGCCTCGTAGTCGGTTACCACTTG
CTGCTTTTCGCAGATTTTAGTTGCCAGGTCCTTTTGGCTGAGGCCCTTGC
TCTGTCGTCCCTGCTGGATGAGCTTGCCCACATCGAGGGGAATCTTGTCG
TGGCGCAGCTCCTCGGTCTCGCGGTCTAGTTTGGCAGTGTTCTTGGTGGT
CACATGCTGCTTGTTGGTGCCAGCACCATACTTCTGTTGGGTATCCACGG
CGACTCCTTGACGGCGTGCCTGGTTGACCGCCGATTCCGTCTTGAGGGTC
GACGATTTCGGTGCTTTCTTCCGAAGAACAGTCACAGAGTCCCAGTCCGA
CATGTCGACTGATAACT

BO05835.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4143-PA 438 mbf1-RA 1..435 453..19 2175 100 Minus
CG4143-PB 438 mbf1-RB 1..435 453..19 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..683 453..19 2175 100 Minus
mbf1-RB 1648 CG4143-RB 209..643 453..19 2175 100 Minus
mbf1-RA 1085 CG4143-RA 109..543 453..19 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 329..169 805 100 Minus
3L 28110227 3L 16575717..16575866 168..19 750 100 Minus
3L 28110227 3L 16574853..16574976 453..330 620 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:39:46 has no hits.

BO05835.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:37 Download gff for BO05835.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-PB 1..438 16..453 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:32 Download gff for BO05835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4143-PB 1..438 16..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:47 Download gff for BO05835.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..547 15..461 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:48 Download gff for BO05835.3prime
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 101..547 15..461 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:48 Download gff for BO05835.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16574853..16574976 330..453 100 -> Minus
3L 16575187..16575347 169..329 100 -> Minus
3L 16575717..16575870 15..168 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:47 Download gff for BO05835.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16567953..16568076 330..453 100 -> Minus
arm_3L 16568287..16568447 169..329 100 -> Minus
arm_3L 16568817..16568970 15..168 98   Minus

BO05835.complete Sequence

469 bp (469 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630163

> BO05835.complete
GAAGTTATCAGTCGACATGTCGGACTGGGACTCTGTGACTGTTCTTCGGA
AGAAAGCACCGAAATCGTCGACCCTCAAGACGGAATCGGCGGTCAACCAG
GCACGCCGTCAAGGAGTCGCCGTGGATACCCAACAGAAGTATGGTGCTGG
CACCAACAAGCAGCATGTGACCACCAAGAACACTGCCAAACTAGACCGCG
AGACCGAGGAGCTGCGCCACGACAAGATTCCCCTCGATGTGGGCAAGCTC
ATCCAGCAGGGACGACAGAGCAAGGGCCTCAGCCAAAAGGACCTGGCAAC
TAAAATCTGCGAAAAGCAGCAAGTGGTAACCGACTACGAGGCCGGTCGCG
GTATTCCAAACAACTTGATTCTGGGTAAAATGGAACGCGTTCTCGGCATT
AAGCTGCGCGGCAAGGAGCGCGGCCAACCAATAGCACCTCCCGGTAAAAA
GGCAAGCTTTCTAGACCAT

BO05835.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 438 CG4143-PC 1..435 17..451 2175 100 Plus
mbf1-RB 438 CG4143-PB 1..435 17..451 2175 100 Plus
mbf1-RA 438 CG4143-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-RC 1225 CG4143-RC 249..683 17..451 2175 100 Plus
mbf1-RB 1648 CG4143-RB 209..643 17..451 2175 100 Plus
mbf1-RA 1085 CG4143-RA 109..543 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16575187..16575347 141..301 805 100 Plus
3L 28110227 3L 16575717..16575866 302..451 750 100 Plus
3L 28110227 3L 16574853..16574976 17..140 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:33:39 has no hits.

BO05835.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:41 Download gff for BO05835.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RB 1..438 17..454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:07 Download gff for BO05835.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RB 79..517 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:16 Download gff for BO05835.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 109..543 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:41 Download gff for BO05835.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RB 79..517 17..455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:06 Download gff for BO05835.complete
Subject Subject Range Query Range Percent Splice Strand
mbf1-RA 109..543 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:06 Download gff for BO05835.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16574853..16574976 17..140 100 -> Plus
3L 16575187..16575347 141..301 100 -> Plus
3L 16575717..16575866 302..453 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:16 Download gff for BO05835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16567953..16568076 17..140 100 -> Plus
arm_3L 16568287..16568447 141..301 100 -> Plus
arm_3L 16568817..16568966 302..453 98   Plus

BO05835.pep Sequence

Translation from 16 to 469

> BO05835.pep
MSDWDSVTVLRKKAPKSSTLKTESAVNQARRQGVAVDTQQKYGAGTNKQH
VTTKNTAKLDRETEELRHDKIPLDVGKLIQQGRQSKGLSQKDLATKICEK
QQVVTDYEAGRGIPNNLILGKMERVLGIKLRGKERGQPIAPPGKKASFLD
H

BO05835.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
mbf1-PC 145 CG4143-PC 1..145 1..145 738 100 Plus
mbf1-PB 145 CG4143-PB 1..145 1..145 738 100 Plus
mbf1-PA 145 CG4143-PA 1..145 1..145 738 100 Plus
mbf1-PD 145 CG4143-PD 1..145 1..145 738 100 Plus
mbf1-PE 188 CG4143-PE 1..145 1..145 738 100 Plus