Clone Sequence Records
BO05836.3prime Sequence
836 bp (733 high quality bases) assembled on 2005-12-02
> BO05836.3prime
ATGGTCTAGAAAGCTTGCTTGCTGCTGCGTGGAGTTTCCATTATAAGTTG
CCTTGTCCTTATCCTTTTCATCCTTCTTCGTATCCTGCAATCTTCGAATA
TTCGAGTCACCATATTTTGGCGGCTGATAGCCACCGGGTCGCTGTTGGAA
TTGCTGAGACTGCGAAGCGGAAGCTTGGCTGGTGTTATGAGCCGGCGGAG
TATTTCCCGGTCCCGGTTGATTTTGTGGAGTGGGCCGCTCCGCTGATCCG
CCAGTCTGTTCCGTTGAAGCACCATCGTATTCGTAGCCTGGAGCTGGTGT
CGGTCGCAGGGAGAACATATCCATGTTGCGACGGGCAGCAGCATCGCCCT
GGTAAACTTCCAGGCCGGCCCGTTGCCCTGGCCACCGGAAGTTGGCCATG
AACACGCTCAGCTTCTGGGTGAGCGGTCGAAGACCCATCTTGTTTATGTA
GTCGAAAGCCTTGGCCGCCGGTGTGAGCAAAGCCCAAATTACGGTGCCCA
GCATGGTCATCAGGGAGCCACCGCTTTGAACCACACGATTCACTTGCTCC
TTGGTCAGCACCAGAACCACCGCATTGGGCACTAGATTTAGCTCGTTCAG
GGTCTTGACCTCGTCCTCCGTTTGGAACTCCCTTCGTGGGTAACTGGTAG
CCAGGGTAAAGTCGCGTACATCGCTCGCCGCCAGCATCTCGTTTCGCACG
TAGACACGAACGGTAGCCAGCACCTCGCCGGCTGGAAAGGATTTGGTGCG
CTGAATGCCACCGGGTAGTCGGATCTGCAGCCTCGTCTCGTCCACCGAAC
TCACCGAGGCGTCTGTTGTGATCACGTTGGAGGCAG
BO05836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-PA | 1971 | CG8042-RA | 1151..1968 | 836..19 | 4090 | 100 | Minus |
| CG8042-PB | 1530 | CG8042-RB | 710..1527 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-RA | 2173 | CG8042-RA | 1241..2058 | 836..19 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7972946..7973441 | 341..836 | 2480 | 100 | Plus |
| 3L | 28110227 | 3L | 7972564..7972885 | 19..340 | 1610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:49:03 has no hits.
BO05836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:39 Download gff for
BO05836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-PB | 710..1530 | 18..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:35 Download gff for
BO05836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-PB | 710..1530 | 18..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:38 Download gff for
BO05836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 1241..2058 | 19..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:42:35 Download gff for
BO05836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 1241..2058 | 19..836 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:42:35 Download gff for
BO05836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7972564..7972885 | 19..340 | 100 | <- | Plus |
| 3L | 7972946..7973441 | 341..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:38 Download gff for
BO05836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7965664..7965985 | 19..340 | 100 | <- | Plus |
| arm_3L | 7966046..7966541 | 341..836 | 100 | | Plus |
BO05836.5prime Sequence
832 bp (767 high quality bases) assembled on 2005-12-02
> BO05836.5prime
GAAGTTATCAGTCGACATGAACTGGCACAAGGGCAACATTGCGGAGGCCG
TGGCGGCATCAAAGGCCAAGGGCGCCGTGTTTGTCGTCTTCATCGAGGGC
CAGGACGAAATGACCCGAAAACTAGAGCGGTTCGTGGATGACAGTCAGGT
GCGCTCCCGCCTGGAAACCTCCGATTTTGTCGCCATCAAAGTCCAGGGAA
ATAGCTCCGCCTACGGACAGTTCATGTCGTTATACAAAATCGTGCCAATT
CCCTCGCTCTTCTTTATTGGCAAAACGGGTACACCTCTGGAGATAGCCAC
TGGGGTTACGGCCAGCGTAGATGAACTGACGGAAAAGATCGATAAGGTTC
TGATCCTGGCGGGAAAACGAACCGAGCCTGTGGCAGCCAGCAGCTCTTCA
TGTGCGAAGACACTTGACCCCAATGAAGTCAGGAGCTTCGCCGGAGCAGA
TGGCTCAAGCAGCACTGGGGAATCTCAAGTAGTTCAAACAGCATCAGAAA
ACTTTAGAGATCCTGAAACCACCTCAGTTTCAAACTCACCAACTGGAGGT
GTGGAGGAGGCCAAGACGAATCCACCAAATTCTCCTGTAGCAGCCAGCTT
GGCATCTATACCCGCTGCTGTATCAACCTCCAGTTTGGAAGGAAAATCAG
GATCAGAGGCAGAGGCTGCTTCTCCCACCGCTTTGGCGGCCGAAAAGAGA
GCAGCAGCGAGCAAAGTGGAGGGTTCAGCTACCACATCCGGGGCAGCTGC
TCGGAATTTTGCCACTAATAATCTTATACCGGCTGTGCCGCTAATGACAC
CTGCTGTCCCAGTTCCAACACAACGACCGCTC
BO05836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-PA | 1971 | CG8042-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
| CG8042-PB | 1530 | CG8042-RB | 92..375 | 549..832 | 1420 | 100 | Plus |
| CG8042-PB | 1530 | CG8042-RB | 1..93 | 138..230 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-RA | 2173 | CG8042-RA | 89..906 | 15..832 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7973842..7974185 | 832..489 | 1720 | 100 | Minus |
| 3L | 28110227 | 3L | 7974301..7974558 | 491..234 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 7974628..7974763 | 233..98 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 7974819..7974903 | 99..15 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:21:24 has no hits.
BO05836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:40 Download gff for
BO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:38 Download gff for
BO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:12:41 Download gff for
BO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 83..906 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:51 Download gff for
BO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 83..906 | 9..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:51 Download gff for
BO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7973842..7974182 | 492..832 | 100 | <- | Minus |
| 3L | 7974301..7974558 | 234..491 | 100 | <- | Minus |
| 3L | 7974628..7974762 | 99..233 | 100 | <- | Minus |
| 3L | 7974820..7974906 | 9..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:12:41 Download gff for
BO05836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7967728..7967862 | 99..233 | 100 | <- | Minus |
| arm_3L | 7967920..7968006 | 9..98 | 95 | | Minus |
| arm_3L | 7967401..7967658 | 234..491 | 100 | <- | Minus |
| arm_3L | 7966942..7967282 | 492..832 | 100 | <- | Minus |
BO05836.complete Sequence
2002 bp assembled on 2008-08-14
GenBank Submission: FJ630164
> BO05836.complete
GAAGTTATCAGTCGACATGAACTGGCACAAGGGCAACATTGCGGAGGCCG
TGGCGGCATCAAAGGCCAAGGGCGCCGTGTTTGTCGTCTTCATCGAGGGC
CAGGACGAAATGACCCGAAAACTAGAGCGGTTCGTGGATGACAGTCAGGT
GCGCTCCCGCCTGGAAACCTCCGATTTTGTCGCCATCAAAGTCCAGGGAA
ATAGCTCCGCCTACGGACAGTTCATGTCGTTATACAAAATCGTGCCAATT
CCCTCGCTCTTCTTTATTGGCAAAACGGGTACACCTCTGGAGATAGCCAC
TGGGGTTACGGCCAGCGTAGATGAACTGACGGAAAAGATCGATAAGGTTC
TGATCCTGGCGGGAAAACGAACCGAGCCTGTGGCAGCCAGCAGCTCTTCA
TGTGCGAAGACACTTGACCCCAATGAAGTCAGGAGCTTCGCCGGAGCAGA
TGGCTCAAGCAGCACTGGGGAATCTCAAGTAGTTCAAACAGCATCAGAAA
ACTTTAGAGATCCTGAAACCACCTCAGTTTCAAACTCACCAACTGGAGGT
GTGGAGGAGGCCAAGACGAATCCACCAAATTCTCCTGTAGCAGCCAGCTT
GGCATCTATACCCGCTGCTGTATCAACCTCCAGTTTGGAAGGAAAATCAG
GATCAGAGGCAGAGGCTGCTTCTCCCACCGCTTTGGCGGCCGAAAAGAGA
GCAGCAGCGAGCAAAGTGGAGGGTTCAGCTACCACATCCGGGGCAGCTGC
TCGGAATTTTGCCACTAATAATCTTATACCGGCTGTGCCGCTAATGACAC
CTGCTGTCCCAGTTCCAACACAACGACCGCTCGAAGCCCAGGACAACACC
GAATCCGAGGAAAGGTTGGCCGAAGTCAGGAACATTCTGGAGCAAAAGCG
AAAGGAGCGTGTGGAGGAGGAGAAACGTATGGAGAAGGAGAACGAGCTGA
GACGACGCAGGGACGGAAGGGAGGCACAGAGCCAACAGGCAAGGGCCAAG
GAGCAGGAGCTCAAGAATATGCAGGAACAGATTAAGCGTGAGCGTCAGGA
GGAGCTGGCGGCCAGGGAGCGCATTCGTGCCCAAATTGCAGCCGATCGGG
CAGAGCAGGCACAACGTTTTAATACGCCGGACATTAGCAGCACGACCAAT
TCGGTGGCGGCCACCGCTGCCTCCAACGTGATCACAACAGACGCCTCGGT
GAGTTCGGTGGACGAGACGAGGCTGCAGATCCGACTACCCGGTGGCATTC
AGCGCACCAAATCCTTTCCAGCCGGCGAGGTGCTGGCTACCGTTCGTGTC
TACGTGCGAAACGAGATGCTGGCGGCGAGCGATGTACGCGACTTTACCCT
GGCTACCAGTTACCCACGAAGGGAGTTCCAAACGGAGGACGAGGTCAAGA
CCCTGAACGAGCTAAATCTAGTGCCCAATGCGGTGGTTCTGGTGCTGACC
AAGGAGCAAGTGAATCGTGTGGTTCAAAGCGGTGGCTCCCTGATGACCAT
GCTGGGCACCGTAATTTGGGCTTTGCTCACACCGGCGGCCAAGGCTTTCG
ACTACATAAACAAGATGGGTCTTCGACCGCTCACCCAGAAGCTGAGCGTG
TTCATGGCCAACTTCCGGTGGCCAGGGCAACGGGCCGGCCTGGAAGTTTA
CCAGGGCGATGCTGCTGCCCGTCGCAACATGGATATGTTCTCCCTGCGAC
CGACACCAGCTCCAGGCTACGAATACGATGGTGCTTCAACGGAACAGACT
GGCGGATCAGCGGAGCGGCCCACTCCACAAAATCAACCGGGACCGGGAAA
TACTCCGCCGGCTCATAACACCAGCCAAGCTTCCGCTTCGCAGTCTCAGC
AATTCCAACAGCGACCCGGTGGCTATCAGCCGCCAAAATATGGTGACTCG
AATATTCGAAGATTGCAGGATACGAAGAAGGATGAAAAGGATAAGGACAA
GGCAACTTATAATGGAAACTCCACGCAGCAGCAAGCAAGCTTTCTAGACC
AT
BO05836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-RA | 1971 | CG8042-PA | 1..1968 | 17..1984 | 9840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-RA | 2173 | CG8042-RA | 89..2058 | 15..1984 | 9850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7972946..7973585 | 1662..1023 | 3200 | 100 | Minus |
| 3L | 28110227 | 3L | 7973649..7974185 | 1025..489 | 2685 | 100 | Minus |
| 3L | 28110227 | 3L | 7972564..7972885 | 1984..1663 | 1610 | 100 | Minus |
| 3L | 28110227 | 3L | 7974301..7974558 | 491..234 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 7974628..7974763 | 233..98 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 7974819..7974903 | 99..15 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:17:24 has no hits.
BO05836.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:16 Download gff for
BO05836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 100..2075 | 9..1984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:12 Download gff for
BO05836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 91..2058 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:08 Download gff for
BO05836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 108..2075 | 17..1986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:58 Download gff for
BO05836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 91..2058 | 17..1986 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:58 Download gff for
BO05836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7972562..7972885 | 1663..1986 | 99 | <- | Minus |
| 3L | 7972946..7973583 | 1025..1662 | 100 | <- | Minus |
| 3L | 7973650..7974182 | 492..1024 | 100 | <- | Minus |
| 3L | 7974301..7974558 | 234..491 | 100 | <- | Minus |
| 3L | 7974628..7974762 | 99..233 | 100 | <- | Minus |
| 3L | 7974820..7974901 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:12 Download gff for
BO05836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7967728..7967862 | 99..233 | 100 | <- | Minus |
| arm_3L | 7967920..7968001 | 17..98 | 100 | | Minus |
| arm_3L | 7965662..7965985 | 1663..1986 | 99 | <- | Minus |
| arm_3L | 7966046..7966683 | 1025..1662 | 100 | <- | Minus |
| arm_3L | 7966750..7967282 | 492..1024 | 100 | <- | Minus |
| arm_3L | 7967401..7967658 | 234..491 | 100 | <- | Minus |
BO05836.pep Sequence
Translation from 16 to 2002
> BO05836.pep
MNWHKGNIAEAVAASKAKGAVFVVFIEGQDEMTRKLERFVDDSQVRSRLE
TSDFVAIKVQGNSSAYGQFMSLYKIVPIPSLFFIGKTGTPLEIATGVTAS
VDELTEKIDKVLILAGKRTEPVAASSSSCAKTLDPNEVRSFAGADGSSST
GESQVVQTASENFRDPETTSVSNSPTGGVEEAKTNPPNSPVAASLASIPA
AVSTSSLEGKSGSEAEAASPTALAAEKRAAASKVEGSATTSGAAARNFAT
NNLIPAVPLMTPAVPVPTQRPLEAQDNTESEERLAEVRNILEQKRKERVE
EEKRMEKENELRRRRDGREAQSQQARAKEQELKNMQEQIKRERQEELAAR
ERIRAQIAADRAEQAQRFNTPDISSTTNSVAATAASNVITTDASVSSVDE
TRLQIRLPGGIQRTKSFPAGEVLATVRVYVRNEMLAASDVRDFTLATSYP
RREFQTEDEVKTLNELNLVPNAVVLVLTKEQVNRVVQSGGSLMTMLGTVI
WALLTPAAKAFDYINKMGLRPLTQKLSVFMANFRWPGQRAGLEVYQGDAA
ARRNMDMFSLRPTPAPGYEYDGASTEQTGGSAERPTPQNQPGPGNTPPAH
NTSQASASQSQQFQQRPGGYQPPKYGDSNIRRLQDTKKDEKDKDKATYNG
NSTQQQASFLDH
BO05836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-PA | 656 | CG8042-PA | 1..656 | 1..656 | 3279 | 100 | Plus |
| CG8209-PA | 331 | CG8209-PA | 46..324 | 206..474 | 278 | 32.3 | Plus |
