Clone Sequence Records
BO05846.3prime Sequence
845 bp (804 high quality bases) assembled on 2005-12-02
> BO05846.3prime
ATGGTCTAGAAAGCTTGCCAACTTCTCAAAGGCGTTGGCATTTGTGAGGA
GCTCGCGGGTCAAGCGCCACACCTGCTTGGCCGCCTGCTCCAAAGCACTG
GGGGATTTACCCTTGAACATGTCCAGTGCGGGAAGGAAGTAGTGGGGACA
ACGGCGATACTGCAGACAGGATATCAGCTGCAGGAATATCCCATTGATGC
GGTCAGCGATGCAGCCCTCGTCCCACTCAAAGTCCCGCGGATGCTTCTCG
CACTCGTAGAGCAGCAGGTTCTTCAGGTGATACGCACTGATGGGATTGCC
TGGTAAATCCAGATGCCTGTCCCTCAGGGTCTTCAGCATGCTCAGACAAC
GTCGACGACAGCCACCTTGCAGCAGACGGTTTTCGGCCTCGAAGAAGCTG
AGCACCCAGGCATCGCCCTCCATGCTGGCGGCATTGTTGTTCTTGTTCTG
CATGATGACGCTCTCCTTGGACAGAAGATCGAAGCCCTCGGTCTTGACCT
CCGCCACGATGTTGGGATGTGGCCACGGGAGATGTGGTACCGGCCAGTGG
GCCGCCGATCTTGGCCAGATGCCTGAGCACTTAAATGCCGGCGTAATCTG
GACCACGAATCGCTCCCGAATGCGCAACTTCACCTCGCTGGTGTCGCCCA
CCATTTTGACCATGTCGCGGTAGACACTTTTATCGCACGCCTGGGCCACC
AGAGTCTGGAAACGGGCACGGATCTTCCGGGAGGACAAATAACCACTGGC
CGTTATGAACTCCACCCACAGGGACATGGACCGCTTCCTTCCATCGCTCA
GCTTCAGAACAGCACATCCCGGCAAGGTGCCATCGTCCACGAAAT
BO05846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-PA | 1107 | CG4766-RA | 278..1104 | 845..19 | 4135 | 100 | Minus |
CG4746-PA | 1098 | mab-2-RA | 283..404 | 840..719 | 385 | 92.6 | Minus |
CG4746-PA | 1098 | mab-2-RA | 900..980 | 214..134 | 230 | 91.3 | Minus |
CG4746-PA | 1098 | mab-2-RA | 690..749 | 424..365 | 175 | 91.6 | Minus |
CG4746-PA | 1098 | mab-2-RA | 835..878 | 279..236 | 170 | 95.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 2673 | CG4766-RA | 879..1705 | 845..19 | 4135 | 100 | Minus |
mab-21-RA | 2082 | CG4746-RA | 642..1408 | 840..65 | 1720 | 82 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5998945..5999426 | 364..845 | 2410 | 100 | Plus |
X | 23542271 | X | 5998476..5998824 | 19..367 | 1745 | 100 | Plus |
X | 23542271 | X | 6012072..6012540 | 363..840 | 1065 | 82 | Plus |
X | 23542271 | X | 6008857..6009151 | 65..359 | 650 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:44:23 has no hits.
BO05846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:51 Download gff for
BO05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 278..1107 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:54 Download gff for
BO05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 278..1107 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:24 Download gff for
BO05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 879..1717 | 5..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:20 Download gff for
BO05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 879..1717 | 5..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:20 Download gff for
BO05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5998464..5998822 | 5..365 | 98 | <- | Plus |
X | 5998947..5999426 | 366..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:24 Download gff for
BO05846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5892497..5892855 | 5..365 | 98 | <- | Plus |
arm_X | 5892980..5893459 | 366..845 | 100 | | Plus |
BO05846.5prime Sequence
770 bp (752 high quality bases) assembled on 2005-11-29
> BO05846.5prime
GAAGTTATCAGTCGACATGCTGGTGCCGCCGGACATGATGGCCGCCCAGA
CGCGCATGGTCTATCAGATGAATCGATTCTGCACGGAGAGGGTTCAGGCC
AGGATGTACAAGACGGCCACCGCCATCCGGGAGATCTGCAAGATCGTCCA
GGACATCCTCAAAGAGGTGGAACTGCAGGAGCCGCGATTCATCTCCAGCC
TCGTCGAGTGCAATGGCAGATTCGAGGGCGTTGAAGTGATATCCCCGAAT
GAATTCGAGATAGTGCTGTATCTGAATCAAATGGGTGTCTTCAATTTCGT
GGACGATGGCACCTTGCCGGGATGTGCTGTTCTGAAGCTGAGCGATGGAA
GGAAGCGGTCCATGTCCCTGTGGGTGGAGTTCATAACGGCCAGTGGTTAT
TTGTCCTCCCGGAAGATCCGTGCCCGTTTCCAGACTCTGGTGGCCCAGGC
GTGCGATAAAAGTGTCTACCGCGACATGGTCAAAATGGTGGGCGACACCA
GCGAGGTGAAGTTGCGCATTCGGGAGCGATTCGTGGTCCAGATTACGCCG
GCATTTAAGTGCTCAGGCATCTGGCCAAGATCGGCGGCCCACTGGCCGGT
ACCACATCTCCCGTGGCCACATCCCAACATCGTGGCGGAGGTCAAGACCG
AGGGCTTCGATCTTCTGTCCAAGGAGAGCGTCATCATGCAGAACAAGAAC
AACAATGCCGCCAGCATGGAGGGCGATGCCTGNGTGCTCAGCTTCTTCGA
GGCCGAAAACCGTCTGCTGC
BO05846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-PA | 1107 | CG4766-RA | 1..754 | 17..770 | 3751 | 99.8 | Plus |
CG4746-PA | 1098 | mab-2-RA | 283..404 | 299..420 | 385 | 92.6 | Plus |
CG4746-PA | 1098 | mab-2-RA | 690..745 | 715..770 | 136 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 2673 | CG4766-RA | 601..1355 | 16..770 | 3764 | 99.9 | Plus |
mab-21-RA | 2082 | CG4746-RA | 486..1104 | 143..770 | 1269 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5998950..5999503 | 770..217 | 2759 | 99.8 | Minus |
X | 23542271 | X | 6012078..6012696 | 770..143 | 1219 | 79.9 | Minus |
X | 23542271 | X | 5999994..6000197 | 219..16 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:47:50 has no hits.
BO05846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:32:52 Download gff for
BO05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:58:56 Download gff for
BO05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-PA | 1..754 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:03 Download gff for
BO05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1355 | 10..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:43:18 Download gff for
BO05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1355 | 10..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:43:18 Download gff for
BO05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5998950..5999500 | 220..770 | 99 | <- | Minus |
X | 5999994..6000202 | 10..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:03 Download gff for
BO05846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5892983..5893533 | 220..770 | 99 | <- | Minus |
arm_X | 5894027..5894235 | 10..219 | 98 | | Minus |
BO05846.complete Sequence
1138 bp (1138 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630165
> BO05846.complete
GAAGTTATCAGTCGACATGCTGGTGCCGCCGGACATGATGGCCGCCCAGA
CGCGCATGGTCTATCAGATGAATCGATTCTGCACGGAGAGGGTTCAGGCC
AGGATGTACAAGACGGCCACCGCCATCCGGGAGATCTGCAAGATCGTCCA
GGACATCCTCAAAGAGGTGGAACTGCAGGAGCCGCGATTCATCTCCAGCC
TCGTCGAGTGCAATGGCAGATTCGAGGGCGTTGAAGTGATATCCCCGAAT
GAATTCGAGATAGTGCTGTATCTGAATCAAATGGGTGTCTTCAATTTCGT
GGACGATGGCACCTTGCCGGGATGTGCTGTTCTGAAGCTGAGCGATGGAA
GGAAGCGGTCCATGTCCCTGTGGGTGGAGTTCATAACGGCCAGTGGTTAT
TTGTCCTCCCGGAAGATCCGTGCCCGTTTCCAGACTCTGGTGGCCCAGGC
GTGCGATAAAAGTGTCTACCGCGACATGGTCAAAATGGTGGGCGACACCA
GCGAGGTGAAGTTGCGCATTCGGGAGCGATTCGTGGTCCAGATTACGCCG
GCATTTAAGTGCTCAGGCATCTGGCCAAGATCGGCGGCCCACTGGCCGGT
ACCACATCTCCCGTGGCCACATCCCAACATCGTGGCGGAGGTCAAGACCG
AGGGCTTCGATCTTCTGTCCAAGGAGAGCGTCATCATGCAGAACAAGAAC
AACAATGCCGCCAGCATGGAGGGCGATGCCTGGGTGCTCAGCTTCTTCGA
GGCCGAAAACCGTCTGCTGCAAGGTGGCTGTCGTCGACGTTGTCTGAGCA
TGCTGAAGACCCTGAGGGACAGGCATCTGGATTTACCAGGCAATCCCATC
AGTGCGTATCACCTGAAGAACCTGCTGCTCTACGAGTGCGAGAAGCATCC
GCGGGACTTTGAGTGGGACGAGGGCTGCATCGCTGACCGCATCAATGGGA
TATTCCTGCAGCTGATATCCTGTCTGCAGTATCGCCGTTGTCCCCACTAC
TTCCTTCCCGCACTGGACATGTTCAAGGGTAAATCCCCCAGTGCTTTGGA
GCAGGCGGCCAAGCAGGTGTGGCGCTTGACCCGCGAGCTCCTCACAAATG
CCAACGCCTTTGAGAAGTTGGCAAGCTTTCTAGACCAT
BO05846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 1107 | CG4766-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
mab-21-RA | 1098 | CG4746-PA | 127..1049 | 143..1074 | 1865 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-RA | 2673 | CG4766-RA | 601..1705 | 16..1120 | 5525 | 100 | Plus |
mab-21-RA | 2082 | CG4746-RA | 486..1408 | 143..1074 | 1865 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5998945..5999503 | 775..217 | 2795 | 100 | Minus |
X | 23542271 | X | 5998476..5998824 | 1120..772 | 1745 | 100 | Minus |
X | 23542271 | X | 6012072..6012696 | 776..143 | 1260 | 80.3 | Minus |
X | 23542271 | X | 5999994..6000197 | 219..16 | 1020 | 100 | Minus |
X | 23542271 | X | 6008857..6009151 | 1074..780 | 650 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:20:56 has no hits.
BO05846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:20 Download gff for
BO05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 1..1107 | 17..1124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:40 Download gff for
BO05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1717 | 10..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:05 Download gff for
BO05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 602..1705 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:20 Download gff for
BO05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 596..1717 | 10..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:38 Download gff for
BO05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4766-RA | 602..1705 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:38 Download gff for
BO05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5998474..5998822 | 774..1122 | 99 | <- | Minus |
X | 5998947..5999500 | 220..773 | 100 | <- | Minus |
X | 5999994..6000196 | 17..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:05 Download gff for
BO05846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5892507..5892855 | 774..1122 | 99 | <- | Minus |
arm_X | 5892980..5893533 | 220..773 | 100 | <- | Minus |
arm_X | 5894027..5894229 | 17..219 | 100 | | Minus |
BO05846.pep Sequence
Translation from 16 to 1138
> BO05846.pep
MLVPPDMMAAQTRMVYQMNRFCTERVQARMYKTATAIREICKIVQDILKE
VELQEPRFISSLVECNGRFEGVEVISPNEFEIVLYLNQMGVFNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSSRKIRARFQTLVAQACDKSV
YRDMVKMVGDTSEVKLRIRERFVVQITPAFKCSGIWPRSAAHWPVPHLPW
PHPNIVAEVKTEGFDLLSKESVIMQNKNNNAASMEGDAWVLSFFEAENRL
LQGGCRRRCLSMLKTLRDRHLDLPGNPISAYHLKNLLLYECEKHPRDFEW
DEGCIADRINGIFLQLISCLQYRRCPHYFLPALDMFKGKSPSALEQAAKQ
VWRLTRELLTNANAFEKLASFLDH
BO05846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4766-PA | 368 | CG4766-PA | 1..368 | 1..368 | 1941 | 100 | Plus |
mab-21-PA | 365 | CG4746-PA | 1..365 | 1..368 | 1567 | 77.7 | Plus |