Clone Sequence Records
BO05855.3prime Sequence
925 bp (789 high quality bases) assembled on 2005-12-02
> BO05855.3prime
ATGGTCTAGAAAGCTTGCATGATCAGCGACCAGCGGTCCCCAGAACATTT
TCGATATCTTCGAGTCGTCCTCGGTTAAAAAGAACTGACGGCCCAAATGC
ACAAACTCCTTGAGCGACAATTGGCCATCGCCGTTCTTGTCTATCACAGC
GAATGAAACGGCAGCATCGTCTTCGGTCAGTCCCAGACAACGGAAGAAGA
GCTTGTATTGTTCGAGATCCAAATGGCCAGTGTGATCAAAGTCCACAGCC
TTAAACAAGTAGGGCAGGAAGCGACCGATGCGTTTGGCCATCTTCTTGTC
GTTGAGACGATGGTGCAGATCGGTGAGGAACTGCTCGGCAGTTACCAGAT
TGTATGGGGTTATCTCCCCGAACTGCTCTTCCCAAGTATGCTTGATCACA
TCGTTGAATTCGGCAGCGACCTCTGGGGTCAAATGGCCCAGATCGCTAAA
GCGTTTGGCCAGCAAACTAAAGTCGTCGAAGGACACGACGCCGTCGTGAT
TAACGTCCAAAATGCGGTGGAGAGTACGCATTTTGCGGCGCCAGAATGCT
GAGTCGCCCCGTTCGCTGCGCTTGGAATCCATTTTCTGGCGACGACGCTC
GAACTCATCATCCGAGTCGGAATCGCTATCACTTTCCACCTCCCGTCGCA
ATTTGGCCGCTCCGGCCTTCTTTGAATATTGACGGACAGCCTGGACCACG
GCAGTTGGCATTTGATGCCAAAGCAGTGAATGTGCTCCATGTCCACAGAT
AATGCCGCCAGATGCCAGGCGGTGACAATCGCTGTGCGAAATGGGCGTGT
TTGGGGGCGGGGAGGCATTCTGCTGCAGAACGCCGACAGTTGCGGCCATG
TTGCGTTCCAGAATTTTCTCTTGAGTGCGCAAAATACCACGGCTCACGAT
GGAGATGCCATGTCGACTGATAACT
BO05855.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1435-PA | 897 | CBP-RA | 47..894 | 866..19 | 4240 | 100 | Minus |
CG1435-PB | 696 | CBP-RB | 1..693 | 711..19 | 3465 | 100 | Minus |
CG1435-PA | 897 | CBP-RA | 8..39 | 905..874 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 2185 | CG1435-RC | 365..1258 | 911..19 | 4400 | 99.7 | Minus |
CBP-RA | 2185 | CG1435-RA | 365..1258 | 911..19 | 4400 | 99.7 | Minus |
CBP-RB | 2225 | CG1435-RB | 546..1298 | 771..19 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7341194..7341504 | 559..249 | 1555 | 100 | Minus |
X | 23542271 | X | 7341572..7341804 | 251..19 | 1165 | 100 | Minus |
X | 23542271 | X | 7340300..7340517 | 775..558 | 1075 | 99.5 | Minus |
X | 23542271 | X | 7337723..7337856 | 905..772 | 580 | 95.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:54:42 has no hits.
BO05855.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:01 Download gff for
BO05855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-PA | 1..897 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:07 Download gff for
BO05855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1435-PA | 1..897 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:39 Download gff for
BO05855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1258 | 19..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:22 Download gff for
BO05855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1258 | 19..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:22 Download gff for
BO05855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7337716..7337856 | 772..911 | 97 | -> | Minus |
X | 7340304..7340516 | 559..771 | 100 | -> | Minus |
X | 7341195..7341503 | 250..558 | 100 | -> | Minus |
X | 7341574..7341804 | 19..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:39 Download gff for
BO05855.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7231749..7231889 | 772..911 | 97 | -> | Minus |
arm_X | 7234337..7234549 | 559..771 | 100 | -> | Minus |
arm_X | 7235228..7235536 | 250..558 | 100 | -> | Minus |
arm_X | 7235607..7235837 | 19..249 | 100 | | Minus |
BO05855.5prime Sequence
874 bp (849 high quality bases) assembled on 2005-11-29
> BO05855.5prime
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTAACGAGGACGACTCGAAGATAT
BO05855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1435-PA | 897 | CBP-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
CG1435-PB | 696 | CBP-RB | 1..638 | 218..855 | 3190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 2185 | CG1435-RC | 365..1223 | 17..874 | 4270 | 99.9 | Plus |
CBP-RA | 2185 | CG1435-RA | 365..1223 | 17..874 | 4270 | 99.9 | Plus |
CBP-RB | 2225 | CG1435-RB | 546..1263 | 158..874 | 3565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7341194..7341504 | 370..680 | 1555 | 100 | Plus |
X | 23542271 | X | 7340300..7340517 | 154..371 | 1075 | 99.5 | Plus |
X | 23542271 | X | 7341572..7341769 | 678..874 | 940 | 99.5 | Plus |
X | 23542271 | X | 7337716..7337856 | 17..157 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:58:42 has no hits.
BO05855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:02 Download gff for
BO05855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:09 Download gff for
BO05855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1435-PA | 1..859 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:26 Download gff for
BO05855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1223 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:20 Download gff for
BO05855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1223 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:20 Download gff for
BO05855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7341195..7341503 | 371..679 | 100 | -> | Plus |
X | 7337716..7337856 | 17..157 | 100 | -> | Plus |
X | 7340304..7340516 | 158..370 | 100 | -> | Plus |
X | 7341574..7341769 | 680..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:26 Download gff for
BO05855.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7231749..7231889 | 17..157 | 100 | -> | Plus |
arm_X | 7234337..7234549 | 158..370 | 100 | -> | Plus |
arm_X | 7235228..7235536 | 371..679 | 100 | -> | Plus |
arm_X | 7235607..7235802 | 680..874 | 99 | | Plus |
BO05855.complete Sequence
928 bp (928 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630168
> BO05855.complete
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTAACCGAGGACGACTCGAAGATATCGAAAATGTTCTGGGGACCGCTGGT
CGCTGATCATGCAAGCTTTCTAGACCAT
BO05855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 1656 | CG1435-PC | 1..894 | 17..910 | 4470 | 100 | Plus |
CBP-RA | 897 | CG1435-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
CBP-RB | 696 | CG1435-PB | 1..693 | 218..910 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-RC | 2185 | CG1435-RC | 365..1258 | 17..910 | 4470 | 100 | Plus |
CBP-RA | 2185 | CG1435-RA | 365..1258 | 17..910 | 4470 | 100 | Plus |
CBP-RB | 2225 | CG1435-RB | 546..1298 | 158..910 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7341194..7341504 | 370..680 | 1555 | 100 | Plus |
X | 23542271 | X | 7341572..7341804 | 678..910 | 1165 | 100 | Plus |
X | 23542271 | X | 7340300..7340517 | 154..371 | 1075 | 99.5 | Plus |
X | 23542271 | X | 7337716..7337856 | 17..157 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:13:10 has no hits.
BO05855.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:22 Download gff for
BO05855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:44 Download gff for
BO05855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 347..1240 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:53 Download gff for
BO05855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1258 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:23 Download gff for
BO05855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 347..1240 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:11 Download gff for
BO05855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CBP-RA | 365..1258 | 17..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:11 Download gff for
BO05855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7337716..7337856 | 17..157 | 100 | -> | Plus |
X | 7340304..7340516 | 158..370 | 100 | -> | Plus |
X | 7341195..7341503 | 371..679 | 100 | -> | Plus |
X | 7341574..7341804 | 680..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:53 Download gff for
BO05855.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7231749..7231889 | 17..157 | 100 | -> | Plus |
arm_X | 7234337..7234549 | 158..370 | 100 | -> | Plus |
arm_X | 7235228..7235536 | 371..679 | 100 | -> | Plus |
arm_X | 7235607..7235837 | 680..912 | 99 | | Plus |
BO05855.pep Sequence
Translation from 16 to 928
> BO05855.pep
MAFSIVSRGILRTSREILERNMAATVGVLQQNASPPPNTPISHSDCHRLA
SGGIICGHGAHSLLWHQMPTAVVQAVRQYSKKAGAAKLRREVESDSDSDS
DDEFERRRQKMDSKRSERGDSAFWRRKMRTLHRILDVNHDGVVSFDDFSL
LAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFGEITPYNLVTAEQFLTDLH
HRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDA
AVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVADHAS
FLDH
BO05855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CBP-PA | 298 | CG1435-PA | 1..298 | 1..298 | 1564 | 100 | Plus |
CBP-PC | 551 | CG1435-PC | 1..298 | 1..298 | 1564 | 100 | Plus |
CBP-PB | 231 | CG1435-PB | 1..231 | 68..298 | 1210 | 100 | Plus |