Clone BO05855 Report

Search the DGRC for BO05855

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCBP-RA
Protein status:BO05855.pep: validated full length
Sequenced Size:928

Clone Sequence Records

BO05855.3prime Sequence

925 bp (789 high quality bases) assembled on 2005-12-02

> BO05855.3prime
ATGGTCTAGAAAGCTTGCATGATCAGCGACCAGCGGTCCCCAGAACATTT
TCGATATCTTCGAGTCGTCCTCGGTTAAAAAGAACTGACGGCCCAAATGC
ACAAACTCCTTGAGCGACAATTGGCCATCGCCGTTCTTGTCTATCACAGC
GAATGAAACGGCAGCATCGTCTTCGGTCAGTCCCAGACAACGGAAGAAGA
GCTTGTATTGTTCGAGATCCAAATGGCCAGTGTGATCAAAGTCCACAGCC
TTAAACAAGTAGGGCAGGAAGCGACCGATGCGTTTGGCCATCTTCTTGTC
GTTGAGACGATGGTGCAGATCGGTGAGGAACTGCTCGGCAGTTACCAGAT
TGTATGGGGTTATCTCCCCGAACTGCTCTTCCCAAGTATGCTTGATCACA
TCGTTGAATTCGGCAGCGACCTCTGGGGTCAAATGGCCCAGATCGCTAAA
GCGTTTGGCCAGCAAACTAAAGTCGTCGAAGGACACGACGCCGTCGTGAT
TAACGTCCAAAATGCGGTGGAGAGTACGCATTTTGCGGCGCCAGAATGCT
GAGTCGCCCCGTTCGCTGCGCTTGGAATCCATTTTCTGGCGACGACGCTC
GAACTCATCATCCGAGTCGGAATCGCTATCACTTTCCACCTCCCGTCGCA
ATTTGGCCGCTCCGGCCTTCTTTGAATATTGACGGACAGCCTGGACCACG
GCAGTTGGCATTTGATGCCAAAGCAGTGAATGTGCTCCATGTCCACAGAT
AATGCCGCCAGATGCCAGGCGGTGACAATCGCTGTGCGAAATGGGCGTGT
TTGGGGGCGGGGAGGCATTCTGCTGCAGAACGCCGACAGTTGCGGCCATG
TTGCGTTCCAGAATTTTCTCTTGAGTGCGCAAAATACCACGGCTCACGAT
GGAGATGCCATGTCGACTGATAACT

BO05855.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1435-PA 897 CBP-RA 47..894 866..19 4240 100 Minus
CG1435-PB 696 CBP-RB 1..693 711..19 3465 100 Minus
CG1435-PA 897 CBP-RA 8..39 905..874 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 2185 CG1435-RC 365..1258 911..19 4400 99.7 Minus
CBP-RA 2185 CG1435-RA 365..1258 911..19 4400 99.7 Minus
CBP-RB 2225 CG1435-RB 546..1298 771..19 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7341194..7341504 559..249 1555 100 Minus
X 23542271 X 7341572..7341804 251..19 1165 100 Minus
X 23542271 X 7340300..7340517 775..558 1075 99.5 Minus
X 23542271 X 7337723..7337856 905..772 580 95.5 Minus
Blast to na_te.dros performed on 2015-02-13 11:54:42 has no hits.

BO05855.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:01 Download gff for BO05855.3prime
Subject Subject Range Query Range Percent Splice Strand
CBP-PA 1..897 16..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:07 Download gff for BO05855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1435-PA 1..897 16..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:39 Download gff for BO05855.3prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1258 19..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:22 Download gff for BO05855.3prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1258 19..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:22 Download gff for BO05855.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7337716..7337856 772..911 97 -> Minus
X 7340304..7340516 559..771 100 -> Minus
X 7341195..7341503 250..558 100 -> Minus
X 7341574..7341804 19..249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:39 Download gff for BO05855.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7231749..7231889 772..911 97 -> Minus
arm_X 7234337..7234549 559..771 100 -> Minus
arm_X 7235228..7235536 250..558 100 -> Minus
arm_X 7235607..7235837 19..249 100   Minus

BO05855.5prime Sequence

874 bp (849 high quality bases) assembled on 2005-11-29

> BO05855.5prime
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTAACGAGGACGACTCGAAGATAT

BO05855.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1435-PA 897 CBP-RA 1..839 17..855 4195 100 Plus
CG1435-PB 696 CBP-RB 1..638 218..855 3190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 2185 CG1435-RC 365..1223 17..874 4270 99.9 Plus
CBP-RA 2185 CG1435-RA 365..1223 17..874 4270 99.9 Plus
CBP-RB 2225 CG1435-RB 546..1263 158..874 3565 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7341194..7341504 370..680 1555 100 Plus
X 23542271 X 7340300..7340517 154..371 1075 99.5 Plus
X 23542271 X 7341572..7341769 678..874 940 99.5 Plus
X 23542271 X 7337716..7337856 17..157 705 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:58:42 has no hits.

BO05855.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:02 Download gff for BO05855.5prime
Subject Subject Range Query Range Percent Splice Strand
CBP-PA 1..859 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:09 Download gff for BO05855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1435-PA 1..859 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:26 Download gff for BO05855.5prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1223 17..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:20 Download gff for BO05855.5prime
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1223 17..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:20 Download gff for BO05855.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7341195..7341503 371..679 100 -> Plus
X 7337716..7337856 17..157 100 -> Plus
X 7340304..7340516 158..370 100 -> Plus
X 7341574..7341769 680..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:26 Download gff for BO05855.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7231749..7231889 17..157 100 -> Plus
arm_X 7234337..7234549 158..370 100 -> Plus
arm_X 7235228..7235536 371..679 100 -> Plus
arm_X 7235607..7235802 680..874 99   Plus

BO05855.complete Sequence

928 bp (928 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630168

> BO05855.complete
GAAGTTATCAGTCGACATGGCATTCTCCATCGTGAGCCGTGGTATTTTGC
GCACTTCAAGAGAAATTCTGGAACGCAACATGGCCGCAACTGTCGGCGTT
CTGCAGCAGAATGCCTCCCCGCCCCCAAACACGCCCATTTCGCACAGCGA
TTGTCACCGCCTGGCATCTGGCGGCATTATCTGTGGACATGGAGCACATT
CACTGCTTTGGCATCAAATGCCAACTGCCGTGGTCCAGGCTGTCCGTCAA
TATTCAAAGAAGGCCGGAGCGGCCAAATTGCGACGGGAGGTGGAAAGTGA
TAGCGATTCCGACTCGGATGATGAGTTCGAGCGTCGTCGCCAGAAAATGG
ATTCCAAGCGCAGCGAACGGGGCGACTCAGCATTCTGGCGCCGCAAAATG
CGTACTCTCCACCGCATTTTGGACGTTAATCACGACGGCGTCGTGTCCTT
CGACGACTTTAGTTTGCTGGCCAAACGCTTTAGCGATCTGGGCCATTTGA
CCCCAGAGGTCGCTGCCGAATTCAACGATGTGATCAAGCATACTTGGGAA
GAGCAGTTCGGGGAGATAACCCCATACAATCTGGTAACTGCCGAGCAGTT
CCTCACCGATCTGCACCATCGTCTCAACGACAAGAAGATGGCCAAACGCA
TCGGTCGCTTCCTGCCCTACTTGTTTAAGGCTGTGGACTTTGATCACACT
GGCCATTTGGATCTCGAACAATACAAGCTCTTCTTCCGTTGTCTGGGACT
GACCGAAGACGATGCTGCCGTTTCATTCGCTGTGATAGACAAGAACGGCG
ATGGCCAATTGTCGCTCAAGGAGTTTGTGCATTTGGGCCGTCAGTTCTTT
TTAACCGAGGACGACTCGAAGATATCGAAAATGTTCTGGGGACCGCTGGT
CGCTGATCATGCAAGCTTTCTAGACCAT

BO05855.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 1656 CG1435-PC 1..894 17..910 4470 100 Plus
CBP-RA 897 CG1435-PA 1..894 17..910 4470 100 Plus
CBP-RB 696 CG1435-PB 1..693 218..910 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-RC 2185 CG1435-RC 365..1258 17..910 4470 100 Plus
CBP-RA 2185 CG1435-RA 365..1258 17..910 4470 100 Plus
CBP-RB 2225 CG1435-RB 546..1298 158..910 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7341194..7341504 370..680 1555 100 Plus
X 23542271 X 7341572..7341804 678..910 1165 100 Plus
X 23542271 X 7340300..7340517 154..371 1075 99.5 Plus
X 23542271 X 7337716..7337856 17..157 705 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:13:10 has no hits.

BO05855.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:22 Download gff for BO05855.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:44 Download gff for BO05855.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 347..1240 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:53 Download gff for BO05855.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1258 17..912 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:23 Download gff for BO05855.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 347..1240 17..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:11 Download gff for BO05855.complete
Subject Subject Range Query Range Percent Splice Strand
CBP-RA 365..1258 17..912 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:11 Download gff for BO05855.complete
Subject Subject Range Query Range Percent Splice Strand
X 7337716..7337856 17..157 100 -> Plus
X 7340304..7340516 158..370 100 -> Plus
X 7341195..7341503 371..679 100 -> Plus
X 7341574..7341804 680..912 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:53 Download gff for BO05855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7231749..7231889 17..157 100 -> Plus
arm_X 7234337..7234549 158..370 100 -> Plus
arm_X 7235228..7235536 371..679 100 -> Plus
arm_X 7235607..7235837 680..912 99   Plus

BO05855.pep Sequence

Translation from 16 to 928

> BO05855.pep
MAFSIVSRGILRTSREILERNMAATVGVLQQNASPPPNTPISHSDCHRLA
SGGIICGHGAHSLLWHQMPTAVVQAVRQYSKKAGAAKLRREVESDSDSDS
DDEFERRRQKMDSKRSERGDSAFWRRKMRTLHRILDVNHDGVVSFDDFSL
LAKRFSDLGHLTPEVAAEFNDVIKHTWEEQFGEITPYNLVTAEQFLTDLH
HRLNDKKMAKRIGRFLPYLFKAVDFDHTGHLDLEQYKLFFRCLGLTEDDA
AVSFAVIDKNGDGQLSLKEFVHLGRQFFLTEDDSKISKMFWGPLVADHAS
FLDH

BO05855.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:44
Subject Length Description Subject Range Query Range Score Percent Strand
CBP-PA 298 CG1435-PA 1..298 1..298 1564 100 Plus
CBP-PC 551 CG1435-PC 1..298 1..298 1564 100 Plus
CBP-PB 231 CG1435-PB 1..231 68..298 1210 100 Plus