Clone BO05856 Report

Search the DGRC for BO05856

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptken-RA
Protein status:BO05856.pep: validated full length
Sequenced Size:1837

Clone Sequence Records

BO05856.3prime Sequence

858 bp (827 high quality bases) assembled on 2005-12-02

> BO05856.3prime
ATGGTCTAGAAAGCTTGCTTCGCGCAGATTCTTTGTCAGCAGCAGGTTAT
TGTGGTGGCCGGACAGGTGACGGACGAGCTCCTGTACCGACTCGAAGCAC
ATGGAGCAGAAGCAGCAGCTGTACCGGTTCTCCGTATCCGCCCCGTTGGT
GGTGGTGATGACGTTCCGGTGAACCGAGCACAGATGCTTCAGCAGGTGGG
CCTTCTGCTTGAACATGGCCACGCAAAGGCGGCAGGCGAACGGCTTTTCG
CCGGTGTGAACGCGCAGATGGGTCTTGAGGTTCCAGGACATGCCGAACTG
TTTGCCACAGTACTCGCATCGATACTCCCGGACCGAGGAGGCGTGCGTGT
TGCTGCCGGCCAAGTTCGCACCCGAACCGGAGGCCGACCCACTGCGTCCC
TCCGGATGATCCAGGTTTAGGCTGATGTGCGACAGACTAGAGAGTCGCGA
CTGGAGATTGGGCATTGCGGACATGGCTGCGTTCTGGTTGGACTGCCACT
GGTACACGAACTGGGGGCCCAAGTGCATCGGTATCTCGGGACTCTGGGCT
CGATTGCGCTGCGCCTCCAGCAGATGCTTCCTGTCCGGCGTCAGTGTGTC
CCCATTGAGTGCTCCGTCCTCCAGGTGCGCCAGCATGTTCTTCTCCGATC
CAAAGCCCGAAATGGGCGACGTCGTCGACTTGGCCAAGCGCAGTTCCTCC
AGTAGGCTGTGTGGGTACGAAGTGAACGGCTGGTTGTCGCTCTGCGTGTT
GTGGAATCCGGGTCGCCGCTTCCGATGCGGCGTTACCACGTAGTTCTCCG
GCGAGCTGTTGATGTCCGACCCATCGGACAGCGGCTTCATCACATCCTTG
TGCGAGTC

BO05856.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5575-PA 1806 ken-RA 964..1803 858..19 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
ken-RA 3070 CG5575-RA 1563..2402 858..19 4200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23875935..23876774 858..19 4200 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:57:35 has no hits.

BO05856.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:03 Download gff for BO05856.3prime
Subject Subject Range Query Range Percent Splice Strand
ken-PA 964..1806 18..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:10 Download gff for BO05856.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5575-PA 964..1806 18..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:54 Download gff for BO05856.3prime
Subject Subject Range Query Range Percent Splice Strand
ken-RA 1563..2402 19..858 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:35 Download gff for BO05856.3prime
Subject Subject Range Query Range Percent Splice Strand
ken-RA 1563..2402 19..858 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:35 Download gff for BO05856.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23875935..23876774 19..858 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:54 Download gff for BO05856.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19763458..19764297 19..858 100   Minus

BO05856.5prime Sequence

849 bp (836 high quality bases) assembled on 2005-12-02

> BO05856.5prime
GAAGTTATCAGTCGACATGAAAGAGTTTCAAAGAATGTTGATGTTGCAAT
ACAGCAAGCATGGCGAGTGCATACTCAAAGAAATCGGAGCAGCCTTCAGA
GGGGAGCACCCGGCGGACCTGACCATCGTCTGCGAGAACAAAGTAAAGCT
GCACGCCCACAAGTTGGTCCTGGCGGCCGCCAGTCCGTTGATAAGGAACC
TGCTGGAGGACACCCACTTGAGCGACTGCTCCACCACCGTATACTTTCCG
GACGTGAATGCCACCTACTTTAAGTTCCTGCTGGACTTCCTGTACTCGGG
GCAGACGTGCATTACCTCACGGGATGTGAACTATCTGCACGACCTGCTGC
TGCTGCTGCAGATCAAGTCGGACAGCTGGAAGACCACCGACTCCGCCTAT
CTGAGCAGCAAGTGCGGCGGCCTGCGGGATCGGGCCGACAGGCGGAAGCA
GCAGTACACCAGCCCACAGAATTTGGAGCCGGATCAGACGCTCAAGTACG
AGGTGGACAGCGTGGATGAGTCGCGCAACGCCGCGGATTTCTCGTCCGCC
TTCAACTCCAACGACAATTGCGAGAGTGCGGCCGAGTGCGAGCGGAGTGG
TGGCCACAACAACAAGGAGGAGGACGAGGACGACTGCACCCACAAGGACA
ACAAGAGCGACAAGGACACGGACGAAATTGTAAATCTCTCGAATGCACCG
CCCAGCGGCACCAGCGGCAGTAACAGCAACATCAGCACCAGCAGCAACCA
CCAGCAGCAACAGCACCACCACCATCACCACCACAACCACAACAACAACA
ATAATAATAACAACAACAACAGCAGCAGCTCAACCATAAATCCCGTCAC

BO05856.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5575-PA 1806 ken-RA 1..832 17..848 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
ken-RA 3070 CG5575-RA 600..1431 17..848 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23875149..23875803 194..848 3275 100 Plus
2R 25286936 2R 23874923..23875095 24..196 865 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:44:48 has no hits.

BO05856.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:04 Download gff for BO05856.5prime
Subject Subject Range Query Range Percent Splice Strand
ken-PA 1..832 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:11 Download gff for BO05856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5575-PA 1..832 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:27 Download gff for BO05856.5prime
Subject Subject Range Query Range Percent Splice Strand
ken-RA 600..1431 17..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:56 Download gff for BO05856.5prime
Subject Subject Range Query Range Percent Splice Strand
ken-RA 600..1431 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:56 Download gff for BO05856.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23874920..23875094 18..195 97 -> Plus
2R 23875151..23875803 196..849 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:27 Download gff for BO05856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19762443..19762617 18..195 97 -> Plus
arm_2R 19762674..19763326 196..849 99   Plus

BO05856.complete Sequence

1837 bp assembled on 2007-10-05

GenBank Submission: FJ630169

> BO05856.complete
GAAGTTATCAGTCGACATGAAAGAGTTTCAAAGAATGTTGATGTTGCAAT
ACAGCAAGCATGGCGAGTGCATACTCAAAGAAATCGGAGCAGCCTTCAGA
GGGGAGCACCCGGCGGACCTGACCATCGTCTGCGAGAACAAAGTAAAGCT
GCACGCCCACAAGTTGGTCCTGGCGGCCGCCAGTCCGTTGATAAGGAACC
TGCTGGAGGACACCCACTTGAGCGACTGCTCCACCACCGTATACTTTCCG
GACGTGAATGCCACCTACTTTAAGTTCCTGCTGGACTTCCTGTACTCGGG
GCAGACGTGCATTACCTCACGGGATGTGAACTATCTGCACGACCTGCTGC
TGCTGCTGCAGATCAAGTCGGACAGCTGGAAGACCACCGACTCCGCCTAT
CTGAGCAGCAAGTGCGGCGGCCTGCGGGATCGGGCCGACAGGCGGAAGCA
GCAGTACACCAGCCCACAGAATTTGGAGCCGGATCAGACGCTCAAGTACG
AGGTGGACAGCGTGGATGAGTCGCGCAACGCCGCGGATTTCTCGTCCGCC
TTCAACTCCAACGACAATTGCGAGAGTGCGGCCGAGTGCGAGCGGAGTGG
TGGCCACAACAACAAGGAGGAGGACGAGGACGACTGCACCCACAAGGACA
ACAAGAGCGACAAGGACACGGACGAAATTGTAAATCTCTCGAATGCACCG
CCCAGCGGCACCAGCGGCAGTAACAGCAACATCAGCACCAGCAGCAACCA
CCAGCAGCAACAGCACCACCACCATCACCACCACAACCACAACAACAACA
ATAATAATAACAACAACAACAGCAGCAGCTCAACCATAAATCCCGTCAAC
CTTTCACTCGACCTTCGGACGAAAAGCGAGAACTCGGCGAGCAGAACCCT
GGGATCCGGATCAGACCACAGCGGCATCGACCTGGCAGTGACAGCGAGCG
AAAGCACGAAACGGAAGGGCCTGTTCTTCGACTCGCACAAGGATGTGATG
AAGCCGCTGTCCGATGGGTCGGACATCAACAGCTCGCCGGAGAACTACGT
GGTAACGCCGCATCGGAAGCGGCGACCCGGATTCCACAACACGCAGAGCG
ACAACCAGCCGTTCACTTCGTACCCACACAGCCTACTGGAGGAACTGCGC
TTGGCCAAGTCGACGACGTCGCCCATTTCGGGCTTTGGATCGGAGAAGAA
CATGCTGGCGCACCTGGAGGACGGAGCACTCAATGGGGACACACTGACGC
CGGACAGGAAGCATCTGCTGGAGGCGCAGCGCAATCGAGCCCAGAGTCCC
GAGATACCGATGCACTTGGGCCCCCAGTTCGTGTACCAGTGGCAGTCCAA
CCAGAACGCAGCCATGTCCGCAATGCCCAATCTCCAGTCGCGACTCTCTA
GTCTGTCGCACATCAGCCTAAACCTGGATCATCCGGAGGGACGCAGTGGG
TCGGCCTCCGGTTCGGGTGCGAACTTGGCCGGCAGCAACACGCACGCCTC
CTCGGTCCGGGAGTATCGATGCGAGTACTGTGGCAAACAGTTCGGCATGT
CCTGGAACCTCAAGACCCATCTGCGCGTTCACACCGGCGAAAAGCCGTTC
GCCTGCCGCCTTTGCGTGGCCATGTTCAAGCAGAAGGCCCACCTGCTGAA
GCATCTGTGCTCGGTTCACCGGAACGTCATCACCACCACCAACGGGGCGG
ATACGGAGAACCGGTACAGCTGCTGCTTCTGCTCCATGTGCTTCGAGTCG
GTACAGGAGCTCGTCCGTCACCTGTCCGGCCACCACAATAACCTGCTGCT
GACAAAGAATCTGCGCGAAGCAAGCTTTCTAGACCAT

BO05856.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
ken-RA 1806 CG5575-PA 1..1803 17..1819 9015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
ken-RA 3070 CG5575-RA 600..2402 17..1819 9015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23875149..23876774 194..1819 8130 100 Plus
2R 25286936 2R 23874923..23875095 24..196 865 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:24:53 has no hits.

BO05856.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:11 Download gff for BO05856.complete
Subject Subject Range Query Range Percent Splice Strand
ken-RA 1..1806 17..1820 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:23 Download gff for BO05856.complete
Subject Subject Range Query Range Percent Splice Strand
ken-RA 598..2400 17..1819 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:45 Download gff for BO05856.complete
Subject Subject Range Query Range Percent Splice Strand
ken-RA 600..2402 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:12 Download gff for BO05856.complete
Subject Subject Range Query Range Percent Splice Strand
ken-RA 598..2400 17..1819 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:07 Download gff for BO05856.complete
Subject Subject Range Query Range Percent Splice Strand
ken-RA 600..2402 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:07 Download gff for BO05856.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23874920..23875094 18..195 97 -> Plus
2R 23875151..23876774 196..1821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:45 Download gff for BO05856.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19762443..19762617 18..195 97 -> Plus
arm_2R 19762674..19764297 196..1821 99   Plus

BO05856.pep Sequence

Translation from 16 to 1837

> BO05856.pep
MKEFQRMLMLQYSKHGECILKEIGAAFRGEHPADLTIVCENKVKLHAHKL
VLAAASPLIRNLLEDTHLSDCSTTVYFPDVNATYFKFLLDFLYSGQTCIT
SRDVNYLHDLLLLLQIKSDSWKTTDSAYLSSKCGGLRDRADRRKQQYTSP
QNLEPDQTLKYEVDSVDESRNAADFSSAFNSNDNCESAAECERSGGHNNK
EEDEDDCTHKDNKSDKDTDEIVNLSNAPPSGTSGSNSNISTSSNHQQQQH
HHHHHHNHNNNNNNNNNNSSSSTINPVNLSLDLRTKSENSASRTLGSGSD
HSGIDLAVTASESTKRKGLFFDSHKDVMKPLSDGSDINSSPENYVVTPHR
KRRPGFHNTQSDNQPFTSYPHSLLEELRLAKSTTSPISGFGSEKNMLAHL
EDGALNGDTLTPDRKHLLEAQRNRAQSPEIPMHLGPQFVYQWQSNQNAAM
SAMPNLQSRLSSLSHISLNLDHPEGRSGSASGSGANLAGSNTHASSVREY
RCEYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSV
HRNVITTTNGADTENRYSCCFCSMCFESVQELVRHLSGHHNNLLLTKNLR
EASFLDH

BO05856.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
ken-PA 601 CG5575-PA 1..601 1..601 3201 100 Plus
CG10348-PB 540 CG10348-PB 49..393 232..592 192 23.4 Plus
CG10348-PC 540 CG10348-PC 49..393 232..592 192 23.4 Plus
CG1603-PB 586 CG1603-PB 474..573 498..607 182 34.5 Plus
CG1603-PA 586 CG1603-PA 474..573 498..607 182 34.5 Plus