Clone Sequence Records
BO05856.3prime Sequence
858 bp (827 high quality bases) assembled on 2005-12-02
> BO05856.3prime
ATGGTCTAGAAAGCTTGCTTCGCGCAGATTCTTTGTCAGCAGCAGGTTAT
TGTGGTGGCCGGACAGGTGACGGACGAGCTCCTGTACCGACTCGAAGCAC
ATGGAGCAGAAGCAGCAGCTGTACCGGTTCTCCGTATCCGCCCCGTTGGT
GGTGGTGATGACGTTCCGGTGAACCGAGCACAGATGCTTCAGCAGGTGGG
CCTTCTGCTTGAACATGGCCACGCAAAGGCGGCAGGCGAACGGCTTTTCG
CCGGTGTGAACGCGCAGATGGGTCTTGAGGTTCCAGGACATGCCGAACTG
TTTGCCACAGTACTCGCATCGATACTCCCGGACCGAGGAGGCGTGCGTGT
TGCTGCCGGCCAAGTTCGCACCCGAACCGGAGGCCGACCCACTGCGTCCC
TCCGGATGATCCAGGTTTAGGCTGATGTGCGACAGACTAGAGAGTCGCGA
CTGGAGATTGGGCATTGCGGACATGGCTGCGTTCTGGTTGGACTGCCACT
GGTACACGAACTGGGGGCCCAAGTGCATCGGTATCTCGGGACTCTGGGCT
CGATTGCGCTGCGCCTCCAGCAGATGCTTCCTGTCCGGCGTCAGTGTGTC
CCCATTGAGTGCTCCGTCCTCCAGGTGCGCCAGCATGTTCTTCTCCGATC
CAAAGCCCGAAATGGGCGACGTCGTCGACTTGGCCAAGCGCAGTTCCTCC
AGTAGGCTGTGTGGGTACGAAGTGAACGGCTGGTTGTCGCTCTGCGTGTT
GTGGAATCCGGGTCGCCGCTTCCGATGCGGCGTTACCACGTAGTTCTCCG
GCGAGCTGTTGATGTCCGACCCATCGGACAGCGGCTTCATCACATCCTTG
TGCGAGTC
BO05856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5575-PA | 1806 | ken-RA | 964..1803 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ken-RA | 3070 | CG5575-RA | 1563..2402 | 858..19 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23875935..23876774 | 858..19 | 4200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:57:35 has no hits.
BO05856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:03 Download gff for
BO05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-PA | 964..1806 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:10 Download gff for
BO05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5575-PA | 964..1806 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:54 Download gff for
BO05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 1563..2402 | 19..858 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:35 Download gff for
BO05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 1563..2402 | 19..858 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:35 Download gff for
BO05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23875935..23876774 | 19..858 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:54 Download gff for
BO05856.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19763458..19764297 | 19..858 | 100 | | Minus |
BO05856.5prime Sequence
849 bp (836 high quality bases) assembled on 2005-12-02
> BO05856.5prime
GAAGTTATCAGTCGACATGAAAGAGTTTCAAAGAATGTTGATGTTGCAAT
ACAGCAAGCATGGCGAGTGCATACTCAAAGAAATCGGAGCAGCCTTCAGA
GGGGAGCACCCGGCGGACCTGACCATCGTCTGCGAGAACAAAGTAAAGCT
GCACGCCCACAAGTTGGTCCTGGCGGCCGCCAGTCCGTTGATAAGGAACC
TGCTGGAGGACACCCACTTGAGCGACTGCTCCACCACCGTATACTTTCCG
GACGTGAATGCCACCTACTTTAAGTTCCTGCTGGACTTCCTGTACTCGGG
GCAGACGTGCATTACCTCACGGGATGTGAACTATCTGCACGACCTGCTGC
TGCTGCTGCAGATCAAGTCGGACAGCTGGAAGACCACCGACTCCGCCTAT
CTGAGCAGCAAGTGCGGCGGCCTGCGGGATCGGGCCGACAGGCGGAAGCA
GCAGTACACCAGCCCACAGAATTTGGAGCCGGATCAGACGCTCAAGTACG
AGGTGGACAGCGTGGATGAGTCGCGCAACGCCGCGGATTTCTCGTCCGCC
TTCAACTCCAACGACAATTGCGAGAGTGCGGCCGAGTGCGAGCGGAGTGG
TGGCCACAACAACAAGGAGGAGGACGAGGACGACTGCACCCACAAGGACA
ACAAGAGCGACAAGGACACGGACGAAATTGTAAATCTCTCGAATGCACCG
CCCAGCGGCACCAGCGGCAGTAACAGCAACATCAGCACCAGCAGCAACCA
CCAGCAGCAACAGCACCACCACCATCACCACCACAACCACAACAACAACA
ATAATAATAACAACAACAACAGCAGCAGCTCAACCATAAATCCCGTCAC
BO05856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5575-PA | 1806 | ken-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ken-RA | 3070 | CG5575-RA | 600..1431 | 17..848 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23875149..23875803 | 194..848 | 3275 | 100 | Plus |
2R | 25286936 | 2R | 23874923..23875095 | 24..196 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:44:48 has no hits.
BO05856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:04 Download gff for
BO05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-PA | 1..832 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:11 Download gff for
BO05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5575-PA | 1..832 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:27 Download gff for
BO05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 600..1431 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:56 Download gff for
BO05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 600..1431 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:56 Download gff for
BO05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23874920..23875094 | 18..195 | 97 | -> | Plus |
2R | 23875151..23875803 | 196..849 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:27 Download gff for
BO05856.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19762443..19762617 | 18..195 | 97 | -> | Plus |
arm_2R | 19762674..19763326 | 196..849 | 99 | | Plus |
BO05856.complete Sequence
1837 bp assembled on 2007-10-05
GenBank Submission: FJ630169
> BO05856.complete
GAAGTTATCAGTCGACATGAAAGAGTTTCAAAGAATGTTGATGTTGCAAT
ACAGCAAGCATGGCGAGTGCATACTCAAAGAAATCGGAGCAGCCTTCAGA
GGGGAGCACCCGGCGGACCTGACCATCGTCTGCGAGAACAAAGTAAAGCT
GCACGCCCACAAGTTGGTCCTGGCGGCCGCCAGTCCGTTGATAAGGAACC
TGCTGGAGGACACCCACTTGAGCGACTGCTCCACCACCGTATACTTTCCG
GACGTGAATGCCACCTACTTTAAGTTCCTGCTGGACTTCCTGTACTCGGG
GCAGACGTGCATTACCTCACGGGATGTGAACTATCTGCACGACCTGCTGC
TGCTGCTGCAGATCAAGTCGGACAGCTGGAAGACCACCGACTCCGCCTAT
CTGAGCAGCAAGTGCGGCGGCCTGCGGGATCGGGCCGACAGGCGGAAGCA
GCAGTACACCAGCCCACAGAATTTGGAGCCGGATCAGACGCTCAAGTACG
AGGTGGACAGCGTGGATGAGTCGCGCAACGCCGCGGATTTCTCGTCCGCC
TTCAACTCCAACGACAATTGCGAGAGTGCGGCCGAGTGCGAGCGGAGTGG
TGGCCACAACAACAAGGAGGAGGACGAGGACGACTGCACCCACAAGGACA
ACAAGAGCGACAAGGACACGGACGAAATTGTAAATCTCTCGAATGCACCG
CCCAGCGGCACCAGCGGCAGTAACAGCAACATCAGCACCAGCAGCAACCA
CCAGCAGCAACAGCACCACCACCATCACCACCACAACCACAACAACAACA
ATAATAATAACAACAACAACAGCAGCAGCTCAACCATAAATCCCGTCAAC
CTTTCACTCGACCTTCGGACGAAAAGCGAGAACTCGGCGAGCAGAACCCT
GGGATCCGGATCAGACCACAGCGGCATCGACCTGGCAGTGACAGCGAGCG
AAAGCACGAAACGGAAGGGCCTGTTCTTCGACTCGCACAAGGATGTGATG
AAGCCGCTGTCCGATGGGTCGGACATCAACAGCTCGCCGGAGAACTACGT
GGTAACGCCGCATCGGAAGCGGCGACCCGGATTCCACAACACGCAGAGCG
ACAACCAGCCGTTCACTTCGTACCCACACAGCCTACTGGAGGAACTGCGC
TTGGCCAAGTCGACGACGTCGCCCATTTCGGGCTTTGGATCGGAGAAGAA
CATGCTGGCGCACCTGGAGGACGGAGCACTCAATGGGGACACACTGACGC
CGGACAGGAAGCATCTGCTGGAGGCGCAGCGCAATCGAGCCCAGAGTCCC
GAGATACCGATGCACTTGGGCCCCCAGTTCGTGTACCAGTGGCAGTCCAA
CCAGAACGCAGCCATGTCCGCAATGCCCAATCTCCAGTCGCGACTCTCTA
GTCTGTCGCACATCAGCCTAAACCTGGATCATCCGGAGGGACGCAGTGGG
TCGGCCTCCGGTTCGGGTGCGAACTTGGCCGGCAGCAACACGCACGCCTC
CTCGGTCCGGGAGTATCGATGCGAGTACTGTGGCAAACAGTTCGGCATGT
CCTGGAACCTCAAGACCCATCTGCGCGTTCACACCGGCGAAAAGCCGTTC
GCCTGCCGCCTTTGCGTGGCCATGTTCAAGCAGAAGGCCCACCTGCTGAA
GCATCTGTGCTCGGTTCACCGGAACGTCATCACCACCACCAACGGGGCGG
ATACGGAGAACCGGTACAGCTGCTGCTTCTGCTCCATGTGCTTCGAGTCG
GTACAGGAGCTCGTCCGTCACCTGTCCGGCCACCACAATAACCTGCTGCT
GACAAAGAATCTGCGCGAAGCAAGCTTTCTAGACCAT
BO05856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ken-RA | 1806 | CG5575-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ken-RA | 3070 | CG5575-RA | 600..2402 | 17..1819 | 9015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23875149..23876774 | 194..1819 | 8130 | 100 | Plus |
2R | 25286936 | 2R | 23874923..23875095 | 24..196 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:24:53 has no hits.
BO05856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:11 Download gff for
BO05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 1..1806 | 17..1820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:23 Download gff for
BO05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 598..2400 | 17..1819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:45 Download gff for
BO05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 600..2402 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:12 Download gff for
BO05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 598..2400 | 17..1819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:07 Download gff for
BO05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ken-RA | 600..2402 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:07 Download gff for
BO05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23874920..23875094 | 18..195 | 97 | -> | Plus |
2R | 23875151..23876774 | 196..1821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:45 Download gff for
BO05856.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19762443..19762617 | 18..195 | 97 | -> | Plus |
arm_2R | 19762674..19764297 | 196..1821 | 99 | | Plus |
BO05856.pep Sequence
Translation from 16 to 1837
> BO05856.pep
MKEFQRMLMLQYSKHGECILKEIGAAFRGEHPADLTIVCENKVKLHAHKL
VLAAASPLIRNLLEDTHLSDCSTTVYFPDVNATYFKFLLDFLYSGQTCIT
SRDVNYLHDLLLLLQIKSDSWKTTDSAYLSSKCGGLRDRADRRKQQYTSP
QNLEPDQTLKYEVDSVDESRNAADFSSAFNSNDNCESAAECERSGGHNNK
EEDEDDCTHKDNKSDKDTDEIVNLSNAPPSGTSGSNSNISTSSNHQQQQH
HHHHHHNHNNNNNNNNNNSSSSTINPVNLSLDLRTKSENSASRTLGSGSD
HSGIDLAVTASESTKRKGLFFDSHKDVMKPLSDGSDINSSPENYVVTPHR
KRRPGFHNTQSDNQPFTSYPHSLLEELRLAKSTTSPISGFGSEKNMLAHL
EDGALNGDTLTPDRKHLLEAQRNRAQSPEIPMHLGPQFVYQWQSNQNAAM
SAMPNLQSRLSSLSHISLNLDHPEGRSGSASGSGANLAGSNTHASSVREY
RCEYCGKQFGMSWNLKTHLRVHTGEKPFACRLCVAMFKQKAHLLKHLCSV
HRNVITTTNGADTENRYSCCFCSMCFESVQELVRHLSGHHNNLLLTKNLR
EASFLDH
BO05856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ken-PA | 601 | CG5575-PA | 1..601 | 1..601 | 3201 | 100 | Plus |
CG10348-PB | 540 | CG10348-PB | 49..393 | 232..592 | 192 | 23.4 | Plus |
CG10348-PC | 540 | CG10348-PC | 49..393 | 232..592 | 192 | 23.4 | Plus |
CG1603-PB | 586 | CG1603-PB | 474..573 | 498..607 | 182 | 34.5 | Plus |
CG1603-PA | 586 | CG1603-PA | 474..573 | 498..607 | 182 | 34.5 | Plus |