Clone Sequence Records
BO05857.3prime Sequence
955 bp (784 high quality bases) assembled on 2005-12-02
> BO05857.3prime
ATGGTCTAGAAAGCTTGCCAACTTCGAGGAGCCAGTCTTGGGGTAGAACT
TCTTCGACGGGTCCTTAGCCATGTCGAGCAGGGTCTGAGCGGGCTTGAAG
GGAGCTCCGTACAGCTCAGCATAGGATTGCATCTTGCTGACCAGTTTGCC
GGCTCCATACTGATCGACCCAGCGGAAGGGACCACCGGAGAATGGCGGGA
AGCCCAGGCCGAACACGGCTCCGACATCGCCCTCCAGCGGACTGTCCAGA
ATCTTCTCCTCCAGACAGAGCACGGCTTCGTTGATGAAGCGGGATACCAT
ACGCAGCGTCAGATCCTCGGGGGCATTGGCTCCCTTTGAGACTAAAGCGT
ACTTTTGTTTCACGATTTCGAGAGCATCGTTGTTCACTGGACGAGTGCCC
CTCTTCTGGCCATCGTACAGGAAGATACCCTTGCCGGACTTGCGTCCGAG
GAAACCAGCCAGGACCAGATCATTCATTACTTCCAAGTTTCCACCGCTGA
AACGTTCGCCGAATGCCTTTGCCAAGTCGACGGCAATGTGGGAACCCACG
TCAATGCCAACCTCATCCGCAAGGGTCGCAGCACCCACGGGGAAGCCAAA
CTTCTTCGTGTATTGGTCCAGATCCTTGGGGTCCACGCCTTCCTGCAGCA
GTCTGATGGCTTCCGACAGCATGGTGGAGAGGATGCGGGTGGTATAGAAG
CCAGGTCCGTCACCAACAGTGATAACGACCTTGCCTTGCTTGAGACCGAC
GGCCACGGCCTGTGCGATGGTGTCCTTGGAGGTTCCTGGGTGAGTGATGA
TTTCCAGCAGCTGCATCTTGTCCACGGGCGAGAAGTAGTGCATGCCAACA
ACCTTCTCGGGACGCGAGCTTCCAGCAGCAATCTTGGTGATGGGAATGGC
GCTGGGTGTTGTGGCAATGACGCAGTGCTCTGGAACACTGCTTCCAGCTC
CTTGA
BO05857.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4389-PC | 2235 | CG4389-RC | 1346..2232 | 905..19 | 4435 | 100 | Minus |
| CG4389-PB | 2235 | CG4389-RB | 1346..2232 | 905..19 | 4435 | 100 | Minus |
| CG4389-PA | 2352 | CG4389-RA | 1463..2349 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2725 | CG4389-RA | 1588..2525 | 955..19 | 4620 | 99.7 | Minus |
| Mtpalpha-RB | 2886 | CG4389-RB | 1739..2676 | 955..19 | 4620 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9573773..9574410 | 19..656 | 3190 | 100 | Plus |
| 2L | 23513712 | 2L | 9574469..9574772 | 653..955 | 1410 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:57:45 has no hits.
BO05857.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:04 Download gff for
BO05857.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1413..2352 | 18..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:13 Download gff for
BO05857.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1413..2352 | 18..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:56 Download gff for
BO05857.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RB | 1740..2676 | 19..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:58 Download gff for
BO05857.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RB | 1740..2676 | 19..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:58 Download gff for
BO05857.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9573773..9574406 | 19..652 | 100 | <- | Plus |
| 2L | 9574469..9574771 | 653..954 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:56 Download gff for
BO05857.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9573773..9574406 | 19..652 | 100 | <- | Plus |
| arm_2L | 9574469..9574771 | 653..954 | 99 | | Plus |
BO05857.5prime Sequence
887 bp (770 high quality bases) assembled on 2005-12-02
> BO05857.5prime
GAAGTTATCAGTCGACATGTCGGCAACGAGGTTTTTGAGTGCCGTTGGCC
AAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACCAGAGCCCTGCCC
ATTTCGGCCCAGCTTCTCCAGAGGCGCCGCCTAATGTCCACGAATCCCGC
ACCGGTTGCCAACAAGCATCTCCACACCAAGGTGGTCAATGGAGTGCTTG
TGATCAAGATCGACTCACCCAATGCCAAGGTGAATTCCCTGGGCTCCGAA
GTGAGCGATGAGTTCGAGCGAGTGATTAAGGACCTGGAGACGAATCCTGC
CGTCAATTCCGCCGTGCTGATCTCGGGCAAACCGGGCTGCTTTGTGGCCG
GAGCCGACATCGGGATGCTGGAAGCATGCCAGACGGCGGAGGAGGCCACG
CTGATCTCCCACGGCGCCCAGGTGATGTTCGATCGCATGGAGCGCAGCAA
GAAGCCCATTGTGGCCGCCATCAGCGGAGTCTGTCTGGGTGGTGGTCTGG
AACTCGCCCTTGCCTGCCATTACCGCATTGCCACCAAGGACAGCAAGACC
AAACTGGGTCTGCCCGAGGTCATGCTGGGTCTCCTGCCCGGCGGCGGTGG
CACCGTCCGCCTGCCCAAGCTTACATCCGTGCCCACGGCTCTGGATATGG
AGCTGACAGGCAAACAGGTGCGCGCCGATCGCGCCAAACGACTGGGCATC
GTGGATCTGTTGGTGGATCCCCTAGGTCCTGGACTCCAGCCTGCTGAGCA
AACACTATCGAGTACCTGGAGAAGACCGCCGTGCAGGTCGCCAACGATCT
GGCTAGTGGTAAACTTCGCGTAAATCGCGAGAAAAGCGGTCTCGTCAGCA
AGATCCAGTCCTTCGTCATGGACACCGACTTTGTGAA
BO05857.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4389-PA | 2352 | CG4389-RA | 1..736 | 17..752 | 3680 | 100 | Plus |
| CG4389-PC | 2235 | CG4389-RC | 1..619 | 134..752 | 3095 | 100 | Plus |
| CG4389-PB | 2235 | CG4389-RB | 1..619 | 134..752 | 3095 | 100 | Plus |
| CG4389-PA | 2352 | CG4389-RA | 735..872 | 750..887 | 690 | 100 | Plus |
| CG4389-PC | 2235 | CG4389-RC | 618..755 | 750..887 | 690 | 100 | Plus |
| CG4389-PB | 2235 | CG4389-RB | 618..755 | 750..887 | 690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2725 | CG4389-RA | 177..1048 | 17..887 | 4335 | 99.9 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 402..1199 | 91..887 | 3965 | 99.9 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 177..253 | 17..93 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9575498..9576231 | 823..91 | 3620 | 99.9 | Minus |
| 2L | 23513712 | 2L | 9576518..9576593 | 92..17 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 9575368..9575435 | 887..820 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:40:53 has no hits.
BO05857.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:05 Download gff for
BO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:14 Download gff for
BO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:54 Download gff for
BO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 173..1048 | 10..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:15 Download gff for
BO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 173..1048 | 10..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:15 Download gff for
BO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9575368..9575435 | 820..887 | 100 | <- | Minus |
| 2L | 9575502..9576229 | 93..819 | 99 | <- | Minus |
| 2L | 9576518..9576597 | 10..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:54 Download gff for
BO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9575368..9575435 | 820..887 | 100 | <- | Minus |
| arm_2L | 9575502..9576229 | 93..819 | 99 | <- | Minus |
| arm_2L | 9576518..9576597 | 10..92 | 96 | | Minus |
BO05857.complete Sequence
2383 bp assembled on 2008-08-14
GenBank Submission: FJ630170
> BO05857.complete
GAAGTTATCAGTCGACATGTCGGCAACGAGGTTTTTGAGTGCCGTTGGCC
AAATTTCGCGACAGCAATTGCTGCAGAATAAGTGCACCAGAGCCCTGCCC
ATTTCGGCCCAGCTTCTCCAGAGGCGCCGCCTAATGTCCACGAATCCCGC
ACCGGTTGCCAACAAGCATCTCCACACCAAGGTGGTCAATGGAGTGCTTG
TGATCAAGATCGACTCACCCAATGCCAAGGTGAATTCCCTGGGCTCCGAA
GTGAGCGATGAGTTCGAGCGAGTGATTAAGGACCTGGAGACGAATCCTGC
CGTCAATTCCGCCGTGCTGATCTCGGGCAAACCGGGCTGCTTTGTGGCCG
GAGCCGACATCGGGATGCTGGAAGCATGCCAGACGGCGGAGGAGGCCACG
CTGATCTCCCACGGCGCCCAGGTGATGTTCGATCGCATGGAGCGCAGCAA
GAAGCCCATTGTGGCCGCCATCAGCGGAGTCTGTCTGGGTGGTGGTCTGG
AACTCGCCCTTGCCTGCCATTACCGCATTGCCACCAAGGACAGCAAGACC
AAACTGGGTCTGCCCGAGGTCATGCTGGGTCTCCTGCCCGGCGGCGGTGG
CACCGTCCGCCTGCCCAAGCTTACATCCGTGCCCACGGCTCTGGATATGG
AGCTGACAGGCAAACAGGTGCGCGCCGATCGCGCCAAACGACTGGGCATC
GTGGATCTGTTGGTGGATCCCCTAGGTCCTGGACTCCAGCCTGCTGAGCA
AAACACTATCGAGTACCTGGAGAAGACCGCCGTGCAGGTCGCCAACGATC
TGGCTAGTGGTAAACTTCGCGTAAATCGCGAGAAAAGCGGTCTCGTCAGC
AAGATCCAGTCCTTCGTCATGGACACCGACTTTGTGAAGAACAAGATTTT
CGACACTGCCAGGAAACAGGTGCTCAAGGCCTCGAACGGTCTCTATCCCG
CTCCTCTGAAGATTCTCGATGTGATCCGTGCTGGCGTGGATAAGGGAACC
GATGCCGGTTACGAGGCGGAGCGCAAGGGCTTCGGCGAGCTATCGGCCAC
GCCCGAGTCGAAGGGTTTGATTGCCCTGTTCCGTGGACAAACGGAGTGCA
AGAAGAACCGATTTGGCAAGCCAGAGCGTCCGGTTAAGACTGTGGGTGTG
CTGGGAGCTGGTCTGATGGGCGCCGGTATTGTACAGGTCTCCGTCGATAA
GGGATATCAGGTGGTGATGAAGGATGCCACCGAAGCCGGCCTGGCTCGTG
GTATTGGACAAGTGCAGAAGGGTTTGGAGACGGCTGTGAAGCGCAAGCGA
ATCTCTGCACTGGAGCGCGATCAGACTCTTGCCAGTCTGCGGCCCACTCT
TGATTACAGCGACTTCAAGAACGCAGACATCATCATCGAAGCTGTTTTCG
AGGACATCAAGGTTAAGCATCGAGTGATCAAGGAGCTGGAAGCAGTGGTT
CCAGAGCACTGCGTCATTGCCACCAACACCAGCGCCATTCCCATCACCAA
GATTGCTGCTGGAAGCTCGCGTCCCGAGAAGGTTGTTGGCATGCACTACT
TCTCGCCCGTGGACAAGATGCAGCTGCTGGAAATCATCACTCACCCAGGA
ACCTCCAAGGACACCATCGCACAGGCCGTGGCCGTCGGTCTCAAGCAAGG
CAAGGTCGTTATCACTGTTGGTGACGGACCTGGCTTCTATACCACCCGCA
TCCTCTCCACCATGCTGTCGGAAGCCATCAGACTGCTGCAGGAAGGCGTG
GACCCCAAGGATCTGGACCAATACACGAAGAAGTTTGGCTTCCCCGTGGG
TGCTGCGACCCTTGCGGATGAGGTTGGCATTGACGTGGGTTCCCACATTG
CCGTCGACTTGGCAAAGGCATTCGGCGAACGTTTCAGCGGTGGAAACTTG
GAAGTAATGAATGATCTGGTCCTGGCTGGTTTCCTCGGACGCAAGTCCGG
CAAGGGTATCTTCCTGTACGATGGCCAGAAGAGGGGCACTCGTCCAGTGA
ACAACGATGCTCTCGAAATCGTGAAACAAAAGTACGCTTTAGTCTCAAAG
GGAGCCAATGCCCCCGAGGATCTGACGCTGCGTATGGTATCCCGCTTCAT
CAACGAAGCCGTGCTCTGTCTGGAGGAGAAGATTCTGGACAGTCCGCTGG
AGGGCGATGTCGGAGCCGTGTTCGGCCTGGGCTTCCCGCCATTCTCCGGT
GGTCCCTTCCGCTGGGTCGATCAGTATGGAGCCGGCAAACTGGTCAGCAA
GATGCAATCCTATGCTGAGCTGTACGGAGCTCCCTTCAAGCCCGCTCAGA
CCCTGCTCGACATGGCTAAGGACCCGTCGAAGAAGTTCTACCCCAAGACT
GGCTCCTCGAAGTTGGCAAGCTTTCTAGACCAT
BO05857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2352 | CG4389-PA | 1..2349 | 17..2365 | 11745 | 100 | Plus |
| Mtpalpha-RB | 2235 | CG4389-PB | 1..2232 | 134..2365 | 11160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2725 | CG4389-RA | 177..2525 | 17..2365 | 11745 | 100 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 402..2676 | 91..2365 | 11375 | 100 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 177..253 | 17..93 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9574469..9575240 | 1731..960 | 3860 | 100 | Minus |
| 2L | 23513712 | 2L | 9575498..9576231 | 824..91 | 3670 | 100 | Minus |
| 2L | 23513712 | 2L | 9573773..9574410 | 2365..1728 | 3190 | 100 | Minus |
| 2L | 23513712 | 2L | 9575291..9575435 | 965..821 | 710 | 99.3 | Minus |
| 2L | 23513712 | 2L | 9576518..9576593 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:28:23 has no hits.
BO05857.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:14 Download gff for
BO05857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-RA | 172..2524 | 10..2365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:46 Download gff for
BO05857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 177..2525 | 17..2367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:02 Download gff for
BO05857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-RA | 176..2524 | 17..2367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:57 Download gff for
BO05857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 177..2525 | 17..2367 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:57 Download gff for
BO05857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9575295..9575435 | 821..961 | 100 | <- | Minus |
| 2L | 9573771..9574406 | 1732..2367 | 99 | <- | Minus |
| 2L | 9574469..9575238 | 962..1731 | 100 | <- | Minus |
| 2L | 9575502..9576229 | 93..820 | 100 | <- | Minus |
| 2L | 9576518..9576593 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:46 Download gff for
BO05857.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9573771..9574406 | 1732..2367 | 99 | <- | Minus |
| arm_2L | 9574469..9575238 | 962..1731 | 100 | <- | Minus |
| arm_2L | 9575295..9575435 | 821..961 | 100 | <- | Minus |
| arm_2L | 9575502..9576229 | 93..820 | 100 | <- | Minus |
| arm_2L | 9576518..9576593 | 17..92 | 100 | | Minus |
BO05857.pep Sequence
Translation from 16 to 2383
> BO05857.pep
MSATRFLSAVGQISRQQLLQNKCTRALPISAQLLQRRRLMSTNPAPVANK
HLHTKVVNGVLVIKIDSPNAKVNSLGSEVSDEFERVIKDLETNPAVNSAV
LISGKPGCFVAGADIGMLEACQTAEEATLISHGAQVMFDRMERSKKPIVA
AISGVCLGGGLELALACHYRIATKDSKTKLGLPEVMLGLLPGGGGTVRLP
KLTSVPTALDMELTGKQVRADRAKRLGIVDLLVDPLGPGLQPAEQNTIEY
LEKTAVQVANDLASGKLRVNREKSGLVSKIQSFVMDTDFVKNKIFDTARK
QVLKASNGLYPAPLKILDVIRAGVDKGTDAGYEAERKGFGELSATPESKG
LIALFRGQTECKKNRFGKPERPVKTVGVLGAGLMGAGIVQVSVDKGYQVV
MKDATEAGLARGIGQVQKGLETAVKRKRISALERDQTLASLRPTLDYSDF
KNADIIIEAVFEDIKVKHRVIKELEAVVPEHCVIATNTSAIPITKIAAGS
SRPEKVVGMHYFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVIT
VGDGPGFYTTRILSTMLSEAIRLLQEGVDPKDLDQYTKKFGFPVGAATLA
DEVGIDVGSHIAVDLAKAFGERFSGGNLEVMNDLVLAGFLGRKSGKGIFL
YDGQKRGTRPVNNDALEIVKQKYALVSKGANAPEDLTLRMVSRFINEAVL
CLEEKILDSPLEGDVGAVFGLGFPPFSGGPFRWVDQYGAGKLVSKMQSYA
ELYGAPFKPAQTLLDMAKDPSKKFYPKTGSSKLASFLDH
BO05857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-PA | 783 | CG4389-PA | 1..783 | 1..783 | 3942 | 100 | Plus |
| Mtpalpha-PB | 744 | CG4389-PB | 1..744 | 40..783 | 3756 | 100 | Plus |
| CG8778-PA | 299 | CG8778-PA | 48..218 | 59..233 | 271 | 38.3 | Plus |
| CG6543-PA | 295 | CG6543-PA | 54..252 | 62..259 | 235 | 33.6 | Plus |
| CG6543-PB | 295 | CG6543-PB | 54..252 | 62..259 | 235 | 33.6 | Plus |
