Clone Sequence Records
BO05858.3prime Sequence
905 bp (780 high quality bases) assembled on 2005-12-02
> BO05858.3prime
ATGGTCTAGAAAGCTTGCACTTTTGCGCTCGGAGTTCTTTAGCTCTGCTA
AGTACCAAGTGAAAGTTGGAAATTGTTTGATGCTGTAGATAGAATACTTT
ATCGAGTTGATTCCATCCTGTTCTATTTTGCTCATGCCATTCTGTAAGTT
TTCATAGCGCTTAGGATTGGCCTTTTCCTTCTGATGCTTCAGCATCTTGT
AGCGAGCTATGTTGACCGGATACCTTGATATGAATAGGTTTGCGTGCTTC
AACCTGTTGGACATGTCGTCATCCTCGCCGCCCCAGCCAAAGAACGAGTT
TGAGAACCCATTTACGGCCTGAAAGTGCTCACGCGTCATTGCGGAAACAC
CTCCAAATATTGATCGATAAGGCAACCTGAAGTTCAGCGTGTCTATAGCC
ACTGACATGTGTCGCGGCTGACGTGGACAGTTGTAAAGATTGCGGTCGTC
CAAAGGCAGAAGATCGACATCGTGGAATATAAAACAATCCCACTGGTACA
GCTTTAAGGCCTCCAAATAACCAATGTTCATCATGGCAGCCCGATTAAAG
GGCTTCCCGTTGGTCTGCTCTACAATGAAAATGCGATAGGCGATGCGCTG
CTTCATCAGAAATGGGTGGATGTTGCGCAGGAAAAGTAATAGATGGGCGT
ATCGATCGCGGAAGGGCACAACAATAGCCACGTGATGCTGGGCATTGCAG
TTTTCAGGCTCGAAGGCGCCACCAGGGCGCAAAAGAGGTCCAAGCTCCGC
CTCAATAACGTCCAGTGACTCCAGTGTCGTGTTGGGCGTGATGGGTCCAC
CATCACGGGGATCGGGATCAGTGCAGTTGGCAAGGAGGGCGGATGTGGAT
TTCTGTCGCGGGGGCAAAATTTCTTTGTGCCAGCAGGAAGCGCGTTAGTC
TTGTG
BO05858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8536-PA | 1212 | beta4GalNAcTA-RA | 359..1209 | 869..19 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1867 | CG8536-RA | 454..1343 | 905..19 | 4375 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14259715..14260140 | 801..376 | 2130 | 100 | Minus |
2R | 25286936 | 2R | 14260195..14260415 | 378..158 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 14260487..14260626 | 158..19 | 700 | 100 | Minus |
2R | 25286936 | 2R | 14259560..14259660 | 897..799 | 405 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:58:55 has no hits.
BO05858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:07 Download gff for
BO05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 320..1212 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:15 Download gff for
BO05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 320..1212 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:28 Download gff for
BO05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 454..1347 | 13..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:23 Download gff for
BO05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 454..1347 | 13..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:23 Download gff for
BO05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14259551..14259658 | 801..905 | 97 | -> | Minus |
2R | 14259716..14260139 | 377..800 | 100 | -> | Minus |
2R | 14260197..14260415 | 158..376 | 100 | -> | Minus |
2R | 14260488..14260630 | 13..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:28 Download gff for
BO05858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10147056..10147163 | 801..905 | 97 | -> | Minus |
arm_2R | 10147221..10147644 | 377..800 | 100 | -> | Minus |
arm_2R | 10147702..10147920 | 158..376 | 100 | -> | Minus |
arm_2R | 10147993..10148135 | 13..157 | 97 | | Minus |
BO05858.5prime Sequence
922 bp (863 high quality bases) assembled on 2005-11-29
> BO05858.5prime
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTTACACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTTTC
CGCAATGACGCGTGAGCACTTT
BO05858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8536-PA | 1212 | beta4GalNAcTA-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
CG8536-PA | 1212 | beta4GalNAcTA-RA | 797..906 | 813..922 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1867 | CG8536-RA | 134..1040 | 16..922 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14259715..14260140 | 443..868 | 2085 | 99.3 | Plus |
2R | 25286936 | 2R | 14259355..14259660 | 140..445 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 14259163..14259288 | 16..141 | 630 | 100 | Plus |
2R | 25286936 | 2R | 14260195..14260251 | 866..922 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:03:18 has no hits.
BO05858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:07 Download gff for
BO05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:17 Download gff for
BO05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8536-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:28 Download gff for
BO05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 124..1040 | 7..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:34 Download gff for
BO05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 124..1040 | 7..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:34 Download gff for
BO05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14259357..14259658 | 142..443 | 100 | -> | Plus |
2R | 14259153..14259288 | 7..141 | 97 | -> | Plus |
2R | 14259716..14260139 | 444..867 | 99 | -> | Plus |
2R | 14260197..14260251 | 868..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:28 Download gff for
BO05858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10146658..10146793 | 7..141 | 97 | -> | Plus |
arm_2R | 10146862..10147163 | 142..443 | 100 | -> | Plus |
arm_2R | 10147221..10147644 | 444..867 | 99 | -> | Plus |
arm_2R | 10147702..10147756 | 868..922 | 100 | | Plus |
BO05858.complete Sequence
1243 bp (1243 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630171
> BO05858.complete
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTTTC
CGCAATGACGCGTGAGCACTTTCAGGCCGTAAATGGGTTCTCAAACTCGT
TCTTTGGCTGGGGCGGCGAGGATGACGACATGTCCAACAGGTTGAAGCAC
GCAAACCTATTCATATCAAGGTATCCGGTCAACATAGCTCGCTACAAGAT
GCTGAAGCATCAGAAGGAAAAGGCCAATCCTAAGCGCTATGAAAACTTAC
AGAATGGCATGAGCAAAATAGAACAGGATGGAATCAACTCGATAAAGTAT
TCTATCTACAGCATCAAACAATTTCCAACTTTCACTTGGTACTTAGCAGA
GCTAAAGAACTCCGAGCGCAAAAGTGCAAGCTTTCTAGACCAT
BO05858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1212 | CG8536-PA | 1..1209 | 17..1225 | 6045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-RA | 1867 | CG8536-RA | 134..1343 | 16..1225 | 6050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14259715..14260140 | 443..868 | 2130 | 100 | Plus |
2R | 25286936 | 2R | 14259355..14259660 | 140..445 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 14260195..14260415 | 866..1086 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 14260487..14260626 | 1086..1225 | 700 | 100 | Plus |
2R | 25286936 | 2R | 14259163..14259288 | 16..141 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:06:42 has no hits.
BO05858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:08 Download gff for
BO05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 1..1212 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:23 Download gff for
BO05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 122..1345 | 7..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:42 Download gff for
BO05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 135..1343 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:09 Download gff for
BO05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 122..1345 | 7..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:37 Download gff for
BO05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beta4GalNAcTA-RA | 135..1343 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:37 Download gff for
BO05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14260488..14260626 | 1087..1227 | 98 | | Plus |
2R | 14259164..14259288 | 17..141 | 100 | -> | Plus |
2R | 14259357..14259658 | 142..443 | 100 | -> | Plus |
2R | 14259716..14260139 | 444..867 | 100 | -> | Plus |
2R | 14260197..14260415 | 868..1086 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:42 Download gff for
BO05858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10147993..10148131 | 1087..1227 | 98 | | Plus |
arm_2R | 10146669..10146793 | 17..141 | 100 | -> | Plus |
arm_2R | 10146862..10147163 | 142..443 | 100 | -> | Plus |
arm_2R | 10147221..10147644 | 444..867 | 100 | -> | Plus |
arm_2R | 10147702..10147920 | 868..1086 | 100 | -> | Plus |
BO05858.pep Sequence
Translation from 16 to 1243
> BO05858.pep
MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA
HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT
ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT
TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL
RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI
FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE
HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK
EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE
RKSASFLDH
BO05858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beta4GalNAcTA-PA | 403 | CG8536-PA | 1..403 | 1..403 | 2117 | 100 | Plus |
beta4GalNAcTB-PA | 323 | CG14517-PA | 91..322 | 163..395 | 551 | 45.5 | Plus |
beta4GalT7-PA | 322 | CG11780-PA | 50..283 | 153..385 | 329 | 32 | Plus |