Clone BO05858 Report

Search the DGRC for BO05858

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:58
Vector:pDNR-Dual
Associated Gene/Transcriptbeta4GalNAcTA-RA
Protein status:BO05858.pep: validated full length
Sequenced Size:1243

Clone Sequence Records

BO05858.3prime Sequence

905 bp (780 high quality bases) assembled on 2005-12-02

> BO05858.3prime
ATGGTCTAGAAAGCTTGCACTTTTGCGCTCGGAGTTCTTTAGCTCTGCTA
AGTACCAAGTGAAAGTTGGAAATTGTTTGATGCTGTAGATAGAATACTTT
ATCGAGTTGATTCCATCCTGTTCTATTTTGCTCATGCCATTCTGTAAGTT
TTCATAGCGCTTAGGATTGGCCTTTTCCTTCTGATGCTTCAGCATCTTGT
AGCGAGCTATGTTGACCGGATACCTTGATATGAATAGGTTTGCGTGCTTC
AACCTGTTGGACATGTCGTCATCCTCGCCGCCCCAGCCAAAGAACGAGTT
TGAGAACCCATTTACGGCCTGAAAGTGCTCACGCGTCATTGCGGAAACAC
CTCCAAATATTGATCGATAAGGCAACCTGAAGTTCAGCGTGTCTATAGCC
ACTGACATGTGTCGCGGCTGACGTGGACAGTTGTAAAGATTGCGGTCGTC
CAAAGGCAGAAGATCGACATCGTGGAATATAAAACAATCCCACTGGTACA
GCTTTAAGGCCTCCAAATAACCAATGTTCATCATGGCAGCCCGATTAAAG
GGCTTCCCGTTGGTCTGCTCTACAATGAAAATGCGATAGGCGATGCGCTG
CTTCATCAGAAATGGGTGGATGTTGCGCAGGAAAAGTAATAGATGGGCGT
ATCGATCGCGGAAGGGCACAACAATAGCCACGTGATGCTGGGCATTGCAG
TTTTCAGGCTCGAAGGCGCCACCAGGGCGCAAAAGAGGTCCAAGCTCCGC
CTCAATAACGTCCAGTGACTCCAGTGTCGTGTTGGGCGTGATGGGTCCAC
CATCACGGGGATCGGGATCAGTGCAGTTGGCAAGGAGGGCGGATGTGGAT
TTCTGTCGCGGGGGCAAAATTTCTTTGTGCCAGCAGGAAGCGCGTTAGTC
TTGTG

BO05858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8536-PA 1212 beta4GalNAcTA-RA 359..1209 869..19 4255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 454..1343 905..19 4375 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259715..14260140 801..376 2130 100 Minus
2R 25286936 2R 14260195..14260415 378..158 1105 100 Minus
2R 25286936 2R 14260487..14260626 158..19 700 100 Minus
2R 25286936 2R 14259560..14259660 897..799 405 98 Minus
Blast to na_te.dros performed on 2015-02-09 18:58:55 has no hits.

BO05858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:07 Download gff for BO05858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 320..1212 18..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:15 Download gff for BO05858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 320..1212 18..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:28 Download gff for BO05858.3prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 454..1347 13..905 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:23 Download gff for BO05858.3prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 454..1347 13..905 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:23 Download gff for BO05858.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14259551..14259658 801..905 97 -> Minus
2R 14259716..14260139 377..800 100 -> Minus
2R 14260197..14260415 158..376 100 -> Minus
2R 14260488..14260630 13..157 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:28 Download gff for BO05858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10147056..10147163 801..905 97 -> Minus
arm_2R 10147221..10147644 377..800 100 -> Minus
arm_2R 10147702..10147920 158..376 100 -> Minus
arm_2R 10147993..10148135 13..157 97   Minus

BO05858.5prime Sequence

922 bp (863 high quality bases) assembled on 2005-11-29

> BO05858.5prime
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTTACACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTTTC
CGCAATGACGCGTGAGCACTTT

BO05858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8536-PA 1212 beta4GalNAcTA-RA 1..793 17..809 3965 100 Plus
CG8536-PA 1212 beta4GalNAcTA-RA 797..906 813..922 550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 134..1040 16..922 4490 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259715..14260140 443..868 2085 99.3 Plus
2R 25286936 2R 14259355..14259660 140..445 1530 100 Plus
2R 25286936 2R 14259163..14259288 16..141 630 100 Plus
2R 25286936 2R 14260195..14260251 866..922 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:03:18 has no hits.

BO05858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:07 Download gff for BO05858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:17 Download gff for BO05858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8536-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:28 Download gff for BO05858.5prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 124..1040 7..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:34 Download gff for BO05858.5prime
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 124..1040 7..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:34 Download gff for BO05858.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14259357..14259658 142..443 100 -> Plus
2R 14259153..14259288 7..141 97 -> Plus
2R 14259716..14260139 444..867 99 -> Plus
2R 14260197..14260251 868..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:28 Download gff for BO05858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10146658..10146793 7..141 97 -> Plus
arm_2R 10146862..10147163 142..443 100 -> Plus
arm_2R 10147221..10147644 444..867 99 -> Plus
arm_2R 10147702..10147756 868..922 100   Plus

BO05858.complete Sequence

1243 bp (1243 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630171

> BO05858.complete
GAAGTTATCAGTCGACATGTACCTCTTCACCAAGGCGAATCTCATACGCT
TCCTAGCCGGCGCGATATGCTTGTTGCTGGTGCTTAACTTTGTGGGCTTC
CGTTCCGACGGAGGTAGCGCCACCTCCCTCAGCAAGCTCAGCATTCGGCG
CGTGCACAAGTATGCTCATATCTACGGGAACGCTAGCAGCGATGGAGCCG
GAGGCAGTGAAGCATCCAGGCTGCCCGCTTCCCCGCTCGCCTTATCAAAA
GACAGAGAGCGGGACCAGGAGCTCAATGGCGGACCCAACTCTACCATAAG
AACTGTGATTGCCACGGCAAACTTTACTTCCATTCCACAAGACTTAACGC
GCTTCCTGCTGGGCACAAAGAAATTTTTGCCCCCGCGACAGAAATCCACA
TCCGCCCTCCTTGCCAACTGCACTGATCCCGATCCCCGTGATGGTGGACC
CATCACGCCCAACACGACACTGGAGTCACTGGACGTTATTGAGGCGGAGC
TTGGACCTCTTTTGCGCCCTGGTGGCGCCTTCGAGCCTGAAAACTGCAAT
GCCCAGCATCACGTGGCTATTGTTGTGCCCTTCCGCGATCGATACGCCCA
TCTATTACTTTTCCTGCGCAACATCCACCCATTTCTGATGAAGCAGCGCA
TCGCCTATCGCATTTTCATTGTAGAGCAGACCAACGGGAAGCCCTTTAAT
CGGGCTGCCATGATGAACATTGGTTATTTGGAGGCCTTAAAGCTGTACCA
GTGGGATTGTTTTATATTCCACGATGTCGATCTTCTGCCTTTGGACGACC
GCAATCTTTACAACTGTCCACGTCAGCCGCGACACATGTCAGTGGCTATA
GACACGCTGAACTTCAGGTTGCCTTATCGATCAATATTTGGAGGTGTTTC
CGCAATGACGCGTGAGCACTTTCAGGCCGTAAATGGGTTCTCAAACTCGT
TCTTTGGCTGGGGCGGCGAGGATGACGACATGTCCAACAGGTTGAAGCAC
GCAAACCTATTCATATCAAGGTATCCGGTCAACATAGCTCGCTACAAGAT
GCTGAAGCATCAGAAGGAAAAGGCCAATCCTAAGCGCTATGAAAACTTAC
AGAATGGCATGAGCAAAATAGAACAGGATGGAATCAACTCGATAAAGTAT
TCTATCTACAGCATCAAACAATTTCCAACTTTCACTTGGTACTTAGCAGA
GCTAAAGAACTCCGAGCGCAAAAGTGCAAGCTTTCTAGACCAT

BO05858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1212 CG8536-PA 1..1209 17..1225 6045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-RA 1867 CG8536-RA 134..1343 16..1225 6050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14259715..14260140 443..868 2130 100 Plus
2R 25286936 2R 14259355..14259660 140..445 1530 100 Plus
2R 25286936 2R 14260195..14260415 866..1086 1105 100 Plus
2R 25286936 2R 14260487..14260626 1086..1225 700 100 Plus
2R 25286936 2R 14259163..14259288 16..141 630 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:06:42 has no hits.

BO05858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:08 Download gff for BO05858.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 1..1212 17..1226 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:23 Download gff for BO05858.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 122..1345 7..1231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:42 Download gff for BO05858.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 135..1343 17..1227 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:09 Download gff for BO05858.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 122..1345 7..1231 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:37 Download gff for BO05858.complete
Subject Subject Range Query Range Percent Splice Strand
beta4GalNAcTA-RA 135..1343 17..1227 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:37 Download gff for BO05858.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14260488..14260626 1087..1227 98   Plus
2R 14259164..14259288 17..141 100 -> Plus
2R 14259357..14259658 142..443 100 -> Plus
2R 14259716..14260139 444..867 100 -> Plus
2R 14260197..14260415 868..1086 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:42 Download gff for BO05858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10147993..10148131 1087..1227 98   Plus
arm_2R 10146669..10146793 17..141 100 -> Plus
arm_2R 10146862..10147163 142..443 100 -> Plus
arm_2R 10147221..10147644 444..867 100 -> Plus
arm_2R 10147702..10147920 868..1086 100 -> Plus

BO05858.pep Sequence

Translation from 16 to 1243

> BO05858.pep
MYLFTKANLIRFLAGAICLLLVLNFVGFRSDGGSATSLSKLSIRRVHKYA
HIYGNASSDGAGGSEASRLPASPLALSKDRERDQELNGGPNSTIRTVIAT
ANFTSIPQDLTRFLLGTKKFLPPRQKSTSALLANCTDPDPRDGGPITPNT
TLESLDVIEAELGPLLRPGGAFEPENCNAQHHVAIVVPFRDRYAHLLLFL
RNIHPFLMKQRIAYRIFIVEQTNGKPFNRAAMMNIGYLEALKLYQWDCFI
FHDVDLLPLDDRNLYNCPRQPRHMSVAIDTLNFRLPYRSIFGGVSAMTRE
HFQAVNGFSNSFFGWGGEDDDMSNRLKHANLFISRYPVNIARYKMLKHQK
EKANPKRYENLQNGMSKIEQDGINSIKYSIYSIKQFPTFTWYLAELKNSE
RKSASFLDH

BO05858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
beta4GalNAcTA-PA 403 CG8536-PA 1..403 1..403 2117 100 Plus
beta4GalNAcTB-PA 323 CG14517-PA 91..322 163..395 551 45.5 Plus
beta4GalT7-PA 322 CG11780-PA 50..283 153..385 329 32 Plus