Clone BO05860 Report

Search the DGRC for BO05860

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptdbr-RB
Protein status:BO05860.pep: Imported from assembly
Sequenced Size:3055

Clone Sequence Records

BO05860.3prime Sequence

791 bp (744 high quality bases) assembled on 2005-12-02

> BO05860.3prime
ATGGTCTAGAAAGCTTGCGCGCTGTCGTGTCGAGCGCGTACCCATGCTAT
GATGTGATTTAGAAGTTGGTCCTTTATAATACTTTGATAACGTTTTGCTA
GTACGGGTCGGTCGGGCGTTGGTGCTGTTCCGTTCTGAAGGTTTTTCCGT
ATCTGCCTTTAACGGCAAGTCATCGTCTTCATCCCATCTAGAGTCTTTTT
TTTCTTCATCGCCAAAATCCTCGACGTTGGAATCAATCTTTGATTTACGT
CCTCGGCGGTTTCTTGATGATGAAGAACTAACATCAGTTCGCTCCCACTT
ATCATCTTTTAGGGAAATCGTGTTTTCTTCTCCTGCTTTAAATCCACGAT
TCAGCAGGGCCAGCTCCCGCTCGGCAATTGCTTTTTTATGCTCATCTGCC
GATTCTGCTGCACTTAGCTTGGTTGTGGAATCGGCAAGTTGCTTCACAGG
TTCTTCATGATTGCCTCGCTTCAGCTGAAGCTGTTGCTCCTGGGCCTGTT
TTATAGAGCGCTTTAACGCACTTCTAAGAGTGTCGCGGGAGTTTTCAGGC
GCTGCATCGGCTCCCAACTGAGAAAGTCCAATAGCCTCCAAAAGCTTTTG
TCCAAGCGCAGCTTTGACTTCCGACTTCCGAACGGATACCGAGCCTGCTT
TGCTATCATCAATATCGTCACTACCTCCATTGTCCGGGACTGGTTCACAC
ACTTCGGGATTTTCTTTCGCATTAATGGCTCTGGCTTTAGGATCGCAAAT
GTCTTCCGGGACGGTACTTGTGGGTGCCTGCTTTAGCTGAC

BO05860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11371-PB 3024 dbr-RB 2249..3021 791..19 3865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 4153 CG11371-RF 2883..3655 791..19 3865 100 Minus
dbr-RE 3454 CG11371-RE 2493..3265 791..19 3865 100 Minus
dbr-RD 3789 CG11371-RD 2519..3291 791..19 3865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 70063..70549 791..305 2435 100 Minus
2L 23513712 2L 70607..70892 304..19 1430 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:03:43 has no hits.

BO05860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:10 Download gff for BO05860.3prime
Subject Subject Range Query Range Percent Splice Strand
dbr-PB 2249..3024 16..791 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:21 Download gff for BO05860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11371-PB 2249..3024 16..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:58 Download gff for BO05860.3prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 2519..3291 19..791 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:54 Download gff for BO05860.3prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 2519..3291 19..791 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:54 Download gff for BO05860.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 70063..70549 305..791 100 -> Minus
2L 70607..70892 19..304 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:58 Download gff for BO05860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 70063..70549 305..791 100 -> Minus
arm_2L 70607..70892 19..304 100   Minus

BO05860.5prime Sequence

918 bp (714 high quality bases) assembled on 2005-12-02

> BO05860.5prime
GAAGTTATCAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTT
GCGCTGCCAACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTT
ATTTTTAAAACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCT
AAATGTAGCTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTT
ACCGCCAAGTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACT
CAGCTCGTGTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAG
GGAAGCGGCTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACC
GACACGACGAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTG
ACCCACGTGCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAA
TTGCCTGGAGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTT
CCTCATCCTCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTT
AACACTGGGAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGC
CCCACTGTCTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGC
CCCTAAACACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGAC
ACAAAACTATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCG
CATCACGGGCAATATACCTGAAGTCCAAGCAGAGGACAATACCGGAAACA
TCAACGTGACAGATAGCAGAAACACAGTTACAGCTTCCGTTCTTATTTCT
TCAAACGTTAGCAATCCAGGAACGAAATCTCAGGACAGTAATTTGTTTCT
GCAGAAAAGTAAAAATCT

BO05860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11371-PB 3024 dbr-RB 1..902 17..918 4485 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 4153 CG11371-RF 633..1536 15..918 4505 99.9 Plus
dbr-RE 3454 CG11371-RE 243..1146 15..918 4505 99.9 Plus
dbr-RD 3789 CG11371-RD 269..1172 15..918 4505 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 68084..68716 286..918 3150 99.8 Plus
2L 23513712 2L 67623..67765 15..157 715 100 Plus
2L 23513712 2L 67892..68023 155..286 660 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:41:15 has no hits.

BO05860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:11 Download gff for BO05860.5prime
Subject Subject Range Query Range Percent Splice Strand
dbr-PB 1..902 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:22 Download gff for BO05860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11371-PB 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:57 Download gff for BO05860.5prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 264..1172 8..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:07 Download gff for BO05860.5prime
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 264..1172 8..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:07 Download gff for BO05860.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 67618..67762 8..154 97 -> Plus
2L 67892..68023 155..286 100 -> Plus
2L 68085..68716 287..918 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:57 Download gff for BO05860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 67618..67762 8..154 97 -> Plus
arm_2L 67892..68023 155..286 100 -> Plus
arm_2L 68085..68716 287..918 99   Plus

BO05860.complete Sequence

3055 bp assembled on 2008-08-14

GenBank Submission: FJ630173

> BO05860.complete
GAAGTTATCAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTT
GCGCTGCCAACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTT
ATTTTTAAAACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCT
AAATGTAGCTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTT
ACCGCCAAGTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACT
CAGCTCGTGTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAG
GGAAGCGGCTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACC
GACACGACGAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTG
ACCCACGTGCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAA
TTGCCTGGAGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTT
CCTCATCCTCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTT
AACACTGGGAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGC
CCCACTGTCTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGC
CCCTAAACACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGAC
ACAAAACTATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCG
CATCACGGGCAATATACCTGAAGTCCAAGCAGAGGACAATACCGGAAACA
TCAACGTGACAGATAGCAGAAACACAGTTACAGCTTCCGTTCTTATTTCT
TCAAACGTTAGCAATCCAGGAACGAAATCTCAGGACAGTAATTTGTTTCT
GCAGAAAAGTAGAAATCTTAAAAACACATTAAACAACATTAAAGCCATGC
GTACCGGACAGGTATCACTGCTTAAGGGTGCGCAAAATCGAAACCCTATT
GAAGATGTTAGACCACTGGTCACAACTACACTGGTACCCCAATATGGTGG
TGAACCTTCCGTGGAGGAAGCACTGCCAGAGCACATGATCTTTGCGGCGC
CAAAAAAGAAAAGGGAGGATGAAGAACAATTTCTTCAAACGGCTCTGCCA
CAGCTAAAGAAAACTGTGCCAAGTCAATCTAAGACAAAGTCCACAAAACT
CGATTTAACTATATCGGTTGATTCGCATGTTTCACCCCCGTCAACGTCAA
TTTCTAATGTTAAAAGCCTCACTGATGCAATATTCCTGGGAAGCGTTATT
AGGGATCCAGACTTGTTGATGCTTATTCTCAAGGCTCTAAAATGGCCGGT
GACAGCAGAAAACTGTGATGAGCAAATGTCCCGCTTAAAAAGTTCAAAGT
TCGCTGTTATAATGTCAGACACAAACCTTCTTCAAGACACAGATCTCACA
CAACTTTTAGGTCCATATTTGGCCCCAATGCTGCCTGTGGTTCAGCAACA
AGATCAGCATCCACTTTCCTCAGCTATCGGGTCTGCTTCTTCAAACCATT
CATCGCAGGCGACTAAAGATGTACTTAAGCTGGCTGACTTATCTAGTGCA
ATGCCTTATAAACTTCCACCAGAAACGTCGGTTCAATTAGTGCCTTCCAG
TCCCACGGAACAGGAACCGCAGCCTGTGCGTCACAAAAAGGCGGTTAGCG
TGCCAACTGTCAAACGCCATCAACGAAAGATGCGTGCCCTTGATTTACCT
GCTGTTGACAAGACGCGCCGCATAATTTCGTTATCGACTTCAAAGGCAGC
TTATGTCAGCAACGAACTGTCGAATATCAATTCTGTGCTTTTTTCGCAGT
TCGAATCAAATCCGGCCGACGCTATTAATGAAGCGCTTATCTCACTCCTT
AAGCAGCAACAACAAGAAACAAAAGACCAGCGAAAAACTCGTCAGAGTTG
TATTGGCTCTGACAGTGCAGTTAATTTAGAAGACATTGTACTGATCGATC
CCCAACCGCCTCTTGCAGTCGATCCGCATAATGTGAAGTACCTTGAGGAT
GACTACGTCTCTCCGCAGTCCCAGCCCGGATCCCAATACAATTTTAAAAG
GCGCAAAACAGACATTCGGTCATCAGAGCCGTCTGAAGTCGTTGTGCTCG
ATAACAGCGGATCCCCAAATGAAAAGAATTCAAAAGAAGTATTTCCAAGT
ACGAAACAGACTTTATCCAGAGAAACAAAGAAAAGTGCGGTAACTGTTAG
AAAAGAATCTTTGGGTCAGCTAAAGCAGGCACCCACAAGTACCGTCCCGG
AAGACATTTGCGATCCTAAAGCCAGAGCCATTAATGCGAAAGAAAATCCC
GAAGTGTGTGAACCAGTCCCGGACAATGGAGGTAGTGACGATATTGATGA
TAGCAAAGCAGGCTCGGTATCCGTTCGGAAGTCGGAAGTCAAAGCTGCGC
TTGGACAAAAGCTTTTGGAGGCTATTGGACTTTCTCAGTTGGGAGCCGAT
GCAGCGCCTGAAAACTCCCGCGACACTCTTAGAAGTGCGTTAAAGCGCTC
TATAAAACAGGCCCAGGAGCAACAGCTTCAGCTGAAGCGAGGCAATCATG
AAGAACCTGTGAAGCAACTTGCCGATTCCACAACCAAGCTAAGTGCAGCA
GAATCGGCAGATGAGCATAAAAAAGCAATTGCCGAGCGGGAGCTGGCCCT
GCTGAATCGTGGATTTAAAGCAGGAGAAGAAAACACGATTTCCCTAAAAG
ATGATAAGTGGGAGCGAACTGATGTTAGTTCTTCATCATCAAGAAACCGC
CGAGGACGTAAATCAAAGATTGATTCCAACGTCGAGGATTTTGGCGATGA
AGAAAAAAAAGACTCTAGATGGGATGAAGACGATGACTTGCCGTTAAAGG
CAGATACGGAAAAACCTTCAGAACGGAACAGCACCAACGCCCGACCGACC
CGTACTAGCAAAACGTTATCAAAGTATTATAAAGGACCAACTTCTAAATC
ACATCATAGCATGGGTACGCGCTCGACACGACAGCGCGCAAGCTTTCTAG
ACCAT

BO05860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 3024 CG11371-PF 1..3021 17..3037 15105 100 Plus
dbr-RE 3024 CG11371-PE 1..3021 17..3037 15105 100 Plus
dbr-RD 3024 CG11371-PD 1..3021 17..3037 15105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-RF 4153 CG11371-RF 633..3655 15..3037 15115 100 Plus
dbr-RE 3454 CG11371-RE 243..3265 15..3037 15115 100 Plus
dbr-RD 3789 CG11371-RD 269..3291 15..3037 15115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 68084..70549 286..2751 12330 100 Plus
2L 23513712 2L 70607..70892 2752..3037 1430 100 Plus
2L 23513712 2L 67623..67765 15..157 715 100 Plus
2L 23513712 2L 67892..68023 155..286 660 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:30:46 has no hits.

BO05860.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:14 Download gff for BO05860.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RB 514..3541 8..3037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:33 Download gff for BO05860.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 271..3291 17..3039 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:09 Download gff for BO05860.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RB 521..3541 17..3039 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:11 Download gff for BO05860.complete
Subject Subject Range Query Range Percent Splice Strand
dbr-RD 271..3291 17..3039 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:11 Download gff for BO05860.complete
Subject Subject Range Query Range Percent Splice Strand
2L 67892..68023 155..286 100 -> Plus
2L 67625..67762 17..154 100 -> Plus
2L 68085..70549 287..2751 100 -> Plus
2L 70607..70892 2752..3039 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:33 Download gff for BO05860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 67892..68023 155..286 100 -> Plus
arm_2L 67625..67762 17..154 100 -> Plus
arm_2L 68085..70549 287..2751 100 -> Plus
arm_2L 70607..70892 2752..3039 99   Plus

BO05860.pep Sequence

Translation from 16 to 3055

> BO05860.pep
MDAQFEHLCRICAANTKSKTNSVVESVFIFKTQGLKDKISRHLYLNVAEE
DPLPKVLCKSCYRQVEATASLSNIAKHTQLVFRDFLLSTLPKNAREAAAA
QLSVPATQIPHRHDEVQAEIDEFRPILLTHVPESGNTASKPQPANCLELA
PKTGENYLAASSSSSSLSKPAGSVKSYLNTGRRNSVFTDTRYGSAPLSIA
QRTMQCLPSLVPLNTESLGSNAMRKSPDTKLSPKGVINFIQTHGRITGNI
PEVQAEDNTGNINVTDSRNTVTASVLISSNVSNPGTKSQDSNLFLQKSRN
LKNTLNNIKAMRTGQVSLLKGAQNRNPIEDVRPLVTTTLVPQYGGEPSVE
EALPEHMIFAAPKKKREDEEQFLQTALPQLKKTVPSQSKTKSTKLDLTIS
VDSHVSPPSTSISNVKSLTDAIFLGSVIRDPDLLMLILKALKWPVTAENC
DEQMSRLKSSKFAVIMSDTNLLQDTDLTQLLGPYLAPMLPVVQQQDQHPL
SSAIGSASSNHSSQATKDVLKLADLSSAMPYKLPPETSVQLVPSSPTEQE
PQPVRHKKAVSVPTVKRHQRKMRALDLPAVDKTRRIISLSTSKAAYVSNE
LSNINSVLFSQFESNPADAINEALISLLKQQQQETKDQRKTRQSCIGSDS
AVNLEDIVLIDPQPPLAVDPHNVKYLEDDYVSPQSQPGSQYNFKRRKTDI
RSSEPSEVVVLDNSGSPNEKNSKEVFPSTKQTLSRETKKSAVTVRKESLG
QLKQAPTSTVPEDICDPKARAINAKENPEVCEPVPDNGGSDDIDDSKAGS
VSVRKSEVKAALGQKLLEAIGLSQLGADAAPENSRDTLRSALKRSIKQAQ
EQQLQLKRGNHEEPVKQLADSTTKLSAAESADEHKKAIAERELALLNRGF
KAGEENTISLKDDKWERTDVSSSSSRNRRGRKSKIDSNVEDFGDEEKKDS
RWDEDDDLPLKADTEKPSERNSTNARPTRTSKTLSKYYKGPTSKSHHSMG
TRSTRQRASFLDH

BO05860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
dbr-PF 1007 CG11371-PF 1..1007 1..1007 5078 100 Plus
dbr-PE 1007 CG11371-PE 1..1007 1..1007 5078 100 Plus
dbr-PD 1007 CG11371-PD 1..1007 1..1007 5078 100 Plus
dbr-PC 1007 CG11371-PC 1..1007 1..1007 5078 100 Plus
dbr-PB 1007 CG11371-PB 1..1007 1..1007 5078 100 Plus