Clone Sequence Records
BO05860.3prime Sequence
791 bp (744 high quality bases) assembled on 2005-12-02
> BO05860.3prime
ATGGTCTAGAAAGCTTGCGCGCTGTCGTGTCGAGCGCGTACCCATGCTAT
GATGTGATTTAGAAGTTGGTCCTTTATAATACTTTGATAACGTTTTGCTA
GTACGGGTCGGTCGGGCGTTGGTGCTGTTCCGTTCTGAAGGTTTTTCCGT
ATCTGCCTTTAACGGCAAGTCATCGTCTTCATCCCATCTAGAGTCTTTTT
TTTCTTCATCGCCAAAATCCTCGACGTTGGAATCAATCTTTGATTTACGT
CCTCGGCGGTTTCTTGATGATGAAGAACTAACATCAGTTCGCTCCCACTT
ATCATCTTTTAGGGAAATCGTGTTTTCTTCTCCTGCTTTAAATCCACGAT
TCAGCAGGGCCAGCTCCCGCTCGGCAATTGCTTTTTTATGCTCATCTGCC
GATTCTGCTGCACTTAGCTTGGTTGTGGAATCGGCAAGTTGCTTCACAGG
TTCTTCATGATTGCCTCGCTTCAGCTGAAGCTGTTGCTCCTGGGCCTGTT
TTATAGAGCGCTTTAACGCACTTCTAAGAGTGTCGCGGGAGTTTTCAGGC
GCTGCATCGGCTCCCAACTGAGAAAGTCCAATAGCCTCCAAAAGCTTTTG
TCCAAGCGCAGCTTTGACTTCCGACTTCCGAACGGATACCGAGCCTGCTT
TGCTATCATCAATATCGTCACTACCTCCATTGTCCGGGACTGGTTCACAC
ACTTCGGGATTTTCTTTCGCATTAATGGCTCTGGCTTTAGGATCGCAAAT
GTCTTCCGGGACGGTACTTGTGGGTGCCTGCTTTAGCTGAC
BO05860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11371-PB | 3024 | dbr-RB | 2249..3021 | 791..19 | 3865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbr-RF | 4153 | CG11371-RF | 2883..3655 | 791..19 | 3865 | 100 | Minus |
dbr-RE | 3454 | CG11371-RE | 2493..3265 | 791..19 | 3865 | 100 | Minus |
dbr-RD | 3789 | CG11371-RD | 2519..3291 | 791..19 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 70063..70549 | 791..305 | 2435 | 100 | Minus |
2L | 23513712 | 2L | 70607..70892 | 304..19 | 1430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:03:43 has no hits.
BO05860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:10 Download gff for
BO05860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-PB | 2249..3024 | 16..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:21 Download gff for
BO05860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11371-PB | 2249..3024 | 16..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:58 Download gff for
BO05860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RD | 2519..3291 | 19..791 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:54 Download gff for
BO05860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RD | 2519..3291 | 19..791 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:54 Download gff for
BO05860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 70063..70549 | 305..791 | 100 | -> | Minus |
2L | 70607..70892 | 19..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:58 Download gff for
BO05860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 70063..70549 | 305..791 | 100 | -> | Minus |
arm_2L | 70607..70892 | 19..304 | 100 | | Minus |
BO05860.5prime Sequence
918 bp (714 high quality bases) assembled on 2005-12-02
> BO05860.5prime
GAAGTTATCAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTT
GCGCTGCCAACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTT
ATTTTTAAAACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCT
AAATGTAGCTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTT
ACCGCCAAGTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACT
CAGCTCGTGTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAG
GGAAGCGGCTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACC
GACACGACGAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTG
ACCCACGTGCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAA
TTGCCTGGAGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTT
CCTCATCCTCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTT
AACACTGGGAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGC
CCCACTGTCTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGC
CCCTAAACACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGAC
ACAAAACTATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCG
CATCACGGGCAATATACCTGAAGTCCAAGCAGAGGACAATACCGGAAACA
TCAACGTGACAGATAGCAGAAACACAGTTACAGCTTCCGTTCTTATTTCT
TCAAACGTTAGCAATCCAGGAACGAAATCTCAGGACAGTAATTTGTTTCT
GCAGAAAAGTAAAAATCT
BO05860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11371-PB | 3024 | dbr-RB | 1..902 | 17..918 | 4485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbr-RF | 4153 | CG11371-RF | 633..1536 | 15..918 | 4505 | 99.9 | Plus |
dbr-RE | 3454 | CG11371-RE | 243..1146 | 15..918 | 4505 | 99.9 | Plus |
dbr-RD | 3789 | CG11371-RD | 269..1172 | 15..918 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 68084..68716 | 286..918 | 3150 | 99.8 | Plus |
2L | 23513712 | 2L | 67623..67765 | 15..157 | 715 | 100 | Plus |
2L | 23513712 | 2L | 67892..68023 | 155..286 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:41:15 has no hits.
BO05860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:11 Download gff for
BO05860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-PB | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:22 Download gff for
BO05860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11371-PB | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:57 Download gff for
BO05860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RD | 264..1172 | 8..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:07 Download gff for
BO05860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RD | 264..1172 | 8..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:07 Download gff for
BO05860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 67618..67762 | 8..154 | 97 | -> | Plus |
2L | 67892..68023 | 155..286 | 100 | -> | Plus |
2L | 68085..68716 | 287..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:57 Download gff for
BO05860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 67618..67762 | 8..154 | 97 | -> | Plus |
arm_2L | 67892..68023 | 155..286 | 100 | -> | Plus |
arm_2L | 68085..68716 | 287..918 | 99 | | Plus |
BO05860.complete Sequence
3055 bp assembled on 2008-08-14
GenBank Submission: FJ630173
> BO05860.complete
GAAGTTATCAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTT
GCGCTGCCAACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTT
ATTTTTAAAACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCT
AAATGTAGCTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTT
ACCGCCAAGTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACT
CAGCTCGTGTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAG
GGAAGCGGCTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACC
GACACGACGAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTG
ACCCACGTGCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAA
TTGCCTGGAGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTT
CCTCATCCTCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTT
AACACTGGGAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGC
CCCACTGTCTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGC
CCCTAAACACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGAC
ACAAAACTATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCG
CATCACGGGCAATATACCTGAAGTCCAAGCAGAGGACAATACCGGAAACA
TCAACGTGACAGATAGCAGAAACACAGTTACAGCTTCCGTTCTTATTTCT
TCAAACGTTAGCAATCCAGGAACGAAATCTCAGGACAGTAATTTGTTTCT
GCAGAAAAGTAGAAATCTTAAAAACACATTAAACAACATTAAAGCCATGC
GTACCGGACAGGTATCACTGCTTAAGGGTGCGCAAAATCGAAACCCTATT
GAAGATGTTAGACCACTGGTCACAACTACACTGGTACCCCAATATGGTGG
TGAACCTTCCGTGGAGGAAGCACTGCCAGAGCACATGATCTTTGCGGCGC
CAAAAAAGAAAAGGGAGGATGAAGAACAATTTCTTCAAACGGCTCTGCCA
CAGCTAAAGAAAACTGTGCCAAGTCAATCTAAGACAAAGTCCACAAAACT
CGATTTAACTATATCGGTTGATTCGCATGTTTCACCCCCGTCAACGTCAA
TTTCTAATGTTAAAAGCCTCACTGATGCAATATTCCTGGGAAGCGTTATT
AGGGATCCAGACTTGTTGATGCTTATTCTCAAGGCTCTAAAATGGCCGGT
GACAGCAGAAAACTGTGATGAGCAAATGTCCCGCTTAAAAAGTTCAAAGT
TCGCTGTTATAATGTCAGACACAAACCTTCTTCAAGACACAGATCTCACA
CAACTTTTAGGTCCATATTTGGCCCCAATGCTGCCTGTGGTTCAGCAACA
AGATCAGCATCCACTTTCCTCAGCTATCGGGTCTGCTTCTTCAAACCATT
CATCGCAGGCGACTAAAGATGTACTTAAGCTGGCTGACTTATCTAGTGCA
ATGCCTTATAAACTTCCACCAGAAACGTCGGTTCAATTAGTGCCTTCCAG
TCCCACGGAACAGGAACCGCAGCCTGTGCGTCACAAAAAGGCGGTTAGCG
TGCCAACTGTCAAACGCCATCAACGAAAGATGCGTGCCCTTGATTTACCT
GCTGTTGACAAGACGCGCCGCATAATTTCGTTATCGACTTCAAAGGCAGC
TTATGTCAGCAACGAACTGTCGAATATCAATTCTGTGCTTTTTTCGCAGT
TCGAATCAAATCCGGCCGACGCTATTAATGAAGCGCTTATCTCACTCCTT
AAGCAGCAACAACAAGAAACAAAAGACCAGCGAAAAACTCGTCAGAGTTG
TATTGGCTCTGACAGTGCAGTTAATTTAGAAGACATTGTACTGATCGATC
CCCAACCGCCTCTTGCAGTCGATCCGCATAATGTGAAGTACCTTGAGGAT
GACTACGTCTCTCCGCAGTCCCAGCCCGGATCCCAATACAATTTTAAAAG
GCGCAAAACAGACATTCGGTCATCAGAGCCGTCTGAAGTCGTTGTGCTCG
ATAACAGCGGATCCCCAAATGAAAAGAATTCAAAAGAAGTATTTCCAAGT
ACGAAACAGACTTTATCCAGAGAAACAAAGAAAAGTGCGGTAACTGTTAG
AAAAGAATCTTTGGGTCAGCTAAAGCAGGCACCCACAAGTACCGTCCCGG
AAGACATTTGCGATCCTAAAGCCAGAGCCATTAATGCGAAAGAAAATCCC
GAAGTGTGTGAACCAGTCCCGGACAATGGAGGTAGTGACGATATTGATGA
TAGCAAAGCAGGCTCGGTATCCGTTCGGAAGTCGGAAGTCAAAGCTGCGC
TTGGACAAAAGCTTTTGGAGGCTATTGGACTTTCTCAGTTGGGAGCCGAT
GCAGCGCCTGAAAACTCCCGCGACACTCTTAGAAGTGCGTTAAAGCGCTC
TATAAAACAGGCCCAGGAGCAACAGCTTCAGCTGAAGCGAGGCAATCATG
AAGAACCTGTGAAGCAACTTGCCGATTCCACAACCAAGCTAAGTGCAGCA
GAATCGGCAGATGAGCATAAAAAAGCAATTGCCGAGCGGGAGCTGGCCCT
GCTGAATCGTGGATTTAAAGCAGGAGAAGAAAACACGATTTCCCTAAAAG
ATGATAAGTGGGAGCGAACTGATGTTAGTTCTTCATCATCAAGAAACCGC
CGAGGACGTAAATCAAAGATTGATTCCAACGTCGAGGATTTTGGCGATGA
AGAAAAAAAAGACTCTAGATGGGATGAAGACGATGACTTGCCGTTAAAGG
CAGATACGGAAAAACCTTCAGAACGGAACAGCACCAACGCCCGACCGACC
CGTACTAGCAAAACGTTATCAAAGTATTATAAAGGACCAACTTCTAAATC
ACATCATAGCATGGGTACGCGCTCGACACGACAGCGCGCAAGCTTTCTAG
ACCAT
BO05860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbr-RF | 3024 | CG11371-PF | 1..3021 | 17..3037 | 15105 | 100 | Plus |
dbr-RE | 3024 | CG11371-PE | 1..3021 | 17..3037 | 15105 | 100 | Plus |
dbr-RD | 3024 | CG11371-PD | 1..3021 | 17..3037 | 15105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbr-RF | 4153 | CG11371-RF | 633..3655 | 15..3037 | 15115 | 100 | Plus |
dbr-RE | 3454 | CG11371-RE | 243..3265 | 15..3037 | 15115 | 100 | Plus |
dbr-RD | 3789 | CG11371-RD | 269..3291 | 15..3037 | 15115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 68084..70549 | 286..2751 | 12330 | 100 | Plus |
2L | 23513712 | 2L | 70607..70892 | 2752..3037 | 1430 | 100 | Plus |
2L | 23513712 | 2L | 67623..67765 | 15..157 | 715 | 100 | Plus |
2L | 23513712 | 2L | 67892..68023 | 155..286 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:30:46 has no hits.
BO05860.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:14 Download gff for
BO05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RB | 514..3541 | 8..3037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:33 Download gff for
BO05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RD | 271..3291 | 17..3039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:09 Download gff for
BO05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RB | 521..3541 | 17..3039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:11 Download gff for
BO05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dbr-RD | 271..3291 | 17..3039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:11 Download gff for
BO05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 67892..68023 | 155..286 | 100 | -> | Plus |
2L | 67625..67762 | 17..154 | 100 | -> | Plus |
2L | 68085..70549 | 287..2751 | 100 | -> | Plus |
2L | 70607..70892 | 2752..3039 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:33 Download gff for
BO05860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 67892..68023 | 155..286 | 100 | -> | Plus |
arm_2L | 67625..67762 | 17..154 | 100 | -> | Plus |
arm_2L | 68085..70549 | 287..2751 | 100 | -> | Plus |
arm_2L | 70607..70892 | 2752..3039 | 99 | | Plus |
BO05860.pep Sequence
Translation from 16 to 3055
> BO05860.pep
MDAQFEHLCRICAANTKSKTNSVVESVFIFKTQGLKDKISRHLYLNVAEE
DPLPKVLCKSCYRQVEATASLSNIAKHTQLVFRDFLLSTLPKNAREAAAA
QLSVPATQIPHRHDEVQAEIDEFRPILLTHVPESGNTASKPQPANCLELA
PKTGENYLAASSSSSSLSKPAGSVKSYLNTGRRNSVFTDTRYGSAPLSIA
QRTMQCLPSLVPLNTESLGSNAMRKSPDTKLSPKGVINFIQTHGRITGNI
PEVQAEDNTGNINVTDSRNTVTASVLISSNVSNPGTKSQDSNLFLQKSRN
LKNTLNNIKAMRTGQVSLLKGAQNRNPIEDVRPLVTTTLVPQYGGEPSVE
EALPEHMIFAAPKKKREDEEQFLQTALPQLKKTVPSQSKTKSTKLDLTIS
VDSHVSPPSTSISNVKSLTDAIFLGSVIRDPDLLMLILKALKWPVTAENC
DEQMSRLKSSKFAVIMSDTNLLQDTDLTQLLGPYLAPMLPVVQQQDQHPL
SSAIGSASSNHSSQATKDVLKLADLSSAMPYKLPPETSVQLVPSSPTEQE
PQPVRHKKAVSVPTVKRHQRKMRALDLPAVDKTRRIISLSTSKAAYVSNE
LSNINSVLFSQFESNPADAINEALISLLKQQQQETKDQRKTRQSCIGSDS
AVNLEDIVLIDPQPPLAVDPHNVKYLEDDYVSPQSQPGSQYNFKRRKTDI
RSSEPSEVVVLDNSGSPNEKNSKEVFPSTKQTLSRETKKSAVTVRKESLG
QLKQAPTSTVPEDICDPKARAINAKENPEVCEPVPDNGGSDDIDDSKAGS
VSVRKSEVKAALGQKLLEAIGLSQLGADAAPENSRDTLRSALKRSIKQAQ
EQQLQLKRGNHEEPVKQLADSTTKLSAAESADEHKKAIAERELALLNRGF
KAGEENTISLKDDKWERTDVSSSSSRNRRGRKSKIDSNVEDFGDEEKKDS
RWDEDDDLPLKADTEKPSERNSTNARPTRTSKTLSKYYKGPTSKSHHSMG
TRSTRQRASFLDH
BO05860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dbr-PF | 1007 | CG11371-PF | 1..1007 | 1..1007 | 5078 | 100 | Plus |
dbr-PE | 1007 | CG11371-PE | 1..1007 | 1..1007 | 5078 | 100 | Plus |
dbr-PD | 1007 | CG11371-PD | 1..1007 | 1..1007 | 5078 | 100 | Plus |
dbr-PC | 1007 | CG11371-PC | 1..1007 | 1..1007 | 5078 | 100 | Plus |
dbr-PB | 1007 | CG11371-PB | 1..1007 | 1..1007 | 5078 | 100 | Plus |