Clone BO05862 Report

Search the DGRC for BO05862

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG5720-RA
Protein status:BO05862.pep: Imported from assembly
Sequenced Size:3046

Clone Sequence Records

BO05862.3prime Sequence

965 bp (908 high quality bases) assembled on 2005-12-02

> BO05862.3prime
ATGGTCTAGAAAGCTTGCGCCCAAAGATGCCACCCACTTGAATTTGCTCT
GCATCTCAGGATGGTAGAAGATGCACTCCAGCTTGTTTACGCAGTTCTTG
CCGAAGCGGCAGGGCTTGGGATGATAGAAGGTGCAGCCCAGCTTGGAACA
ATTCGGATAGTACTTGCACATGGTAGTCGCAGTCGTGGATGTAACAGGAG
CCGATATCGACTTGTAGTTCTGCACTGGGATGACGTGAGAGGATAGTGGT
GGAGCAGCAAGCTGGACATGGCTTAGATCCCTTTGACCGCCATGGGCGTA
GTTGCAGTCTATGCTCATGCAGGCCATGTCGAATTTGCACTTCGGATGCG
AGTACATGCACTTGTCCGCGAATTTGCAGTTGGGGAAAGACTTGCACGGC
GCCGTTGGATGATAGTACTCACAGAACTGCTTTGTGCAGTTTGGATGATA
TTTGCAGCGCTCCTTGGGTTTGTTCACCTTCAGCACGGTGGAATCCACGC
TAACTGCGCTCAACGCCGGCAAGTTGTCGTATTTCCTGTCCTCCGGATTG
CGTATGGATACCCTGCGTCTCTCCGGAGCCGCGACATCACGATCGGGGCT
GCCAGAACGACGCTTCTTACTCGCACTCGGCTCGTCCTCACTTTTAAGAG
TGAAGCGAATGGGCGTGTGCTTGGCTTTGGTAGTTGTCGAAACGGAAGTG
GACGCACTGACAGATTTGGCGGCCGATGACGTCTCCGCTGAATTAGATCT
TACGGATTTCTCCTTGCTGGAAGCTTTCTTCTCCGCCCGCGCCTTTGGTT
TGGCTGGCAGCGGTGGAGTTGTTGAGCCTTCCTCGATTTTACCCTTATCC
TTATTGTCCTTGTGACCATTGGCCGCCGCTGGCTGGCGCTTGTTTGGTGA
TCGTTTCTTCGGTGACCCGTGCATTTCATCATCTTCATCGGTGTCATTTT
TTATGATGATCTTCT

BO05862.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5720-PA 3015 CG5720-RA 2066..3012 965..19 4735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3490 CG5720-RA 2229..3175 965..19 4735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24315592..24316044 513..965 2265 100 Plus
3R 32079331 3R 24315260..24315529 243..512 1350 100 Plus
3R 32079331 3R 24314975..24315198 19..242 1120 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:48:24 has no hits.

BO05862.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:14 Download gff for BO05862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 2066..3015 15..965 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:26 Download gff for BO05862.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 2066..3015 15..965 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:35 Download gff for BO05862.3prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 2229..3178 15..965 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:12:36 Download gff for BO05862.3prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 2229..3178 15..965 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:12:36 Download gff for BO05862.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24314972..24315198 15..242 99 <- Plus
3R 24315260..24315529 243..512 100 <- Plus
3R 24315592..24316044 513..965 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:35 Download gff for BO05862.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20140694..20140920 15..242 99 <- Plus
arm_3R 20140982..20141251 243..512 100 <- Plus
arm_3R 20141314..20141766 513..965 100   Plus

BO05862.5prime Sequence

943 bp (832 high quality bases) assembled on 2005-12-02

> BO05862.5prime
GAAGTTATCAGTCGACATGGAGTGCAATCTGGGCAGCGAGATTGGTCAGA
AGATGCGCAGCGCCGTAAAGGCAAAGCTGCTGGAGCTGGGAACCGGAGGA
TCGGCCGGTTTTATAGACGATGAATTGCCGGACTACGTCATGGTCATGGT
GGCCAACAAGCGCACCAAACAGCAGATGAACGCCGAGCTGAATCTATTCC
TAGGCGATCAAACTGACCTCTTTGTCACCTGGCTGCACGAAGTGCTGCAA
AAGCTCCAAGAGGTCACACTCCCCACATCCAGTGCTTCCAGCAAGAAGCG
CAAGTCTCGCGGTCAGGAGAAGGACAAAAAAGGATCCAAGAAGGATAAGC
GACCGCACCGAAAGTCCGGAGATGAGCTGTCGGAACCACAGCCAAGTTCC
TCAGATGCCATGCCAATTGTCAGTTCCATCACGGATGTTTTTGCCGAAGA
GCTTCTCGAGAAGGCAAAGAAAACCATGGACATTGATCTCAGTGCCAAAG
ACGAGATCCTGCACAAAAAGAAAAATCGCAAGTCCATCGAGGATGAGGAT
GCATCGGCCAATAGGGCGCTGGATGTGCCCGCTGTGTCTGAGATCATCTC
AACTACTATCGGTGTTAACCGGCAAAAAGACCTCGCTGAGCTGGCCGAAA
TCCAAAAGAAAATTCATGCAGCCAAGAAGCATTTACGCCAGATTGGCGAG
ATCGGGGATGAAAGCGATGAATATGATGAGGATCTGTTGAACTTGAGCGC
GAGGGAGGAGTCTGTAGACCAGGAGCCAGAAGAGGATCCCCCGAAATTGG
AGGCTCCACCACGAAAAGCTAAGAGCCCCATTATTTTTTACAGACGCGAG
AAGACACCCCGAAAGCGTCCAGAGGCTGAACCGGAGATCGATTCCCCGCC
AGAGGAGGCGGAGGAGAAGAGCCCAAAAAAGATTCTTCGGCTG

BO05862.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5720-PA 3015 CG5720-RA 1..880 17..896 4325 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3490 CG5720-RA 162..1091 15..943 4535 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24317182..24317842 943..284 3150 98.8 Minus
3R 32079331 3R 24317896..24318121 284..59 1130 100 Minus
3R 32079331 3R 24318215..24318258 58..15 220 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:23:39 has no hits.

BO05862.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:15 Download gff for BO05862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 1..928 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:27 Download gff for BO05862.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5720-PA 1..928 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:16 Download gff for BO05862.5prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 156..1091 9..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:06 Download gff for BO05862.5prime
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 156..1091 9..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:06 Download gff for BO05862.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24317182..24317841 285..943 99 <- Minus
3R 24317896..24318121 59..284 100 <- Minus
3R 24318215..24318264 9..58 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:16 Download gff for BO05862.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20142904..20143563 285..943 99 <- Minus
arm_3R 20143618..20143843 59..284 100 <- Minus
arm_3R 20143937..20143986 9..58 94   Minus

BO05862.complete Sequence

3046 bp assembled on 2008-08-14

GenBank Submission: FJ630174

> BO05862.complete
GAAGTTATCAGTCGACATGGAGTGCAATCTGGGCAGCGAGATTGGTCAGA
AGATGCGCAGCGCCGTAAAGGCAAAGCTGCTGGAGCTGGGAACCGGAGGA
TCGGCCGGTTTTATAGACGATGAATTGCCGGACTACGTCATGGTCATGGT
GGCCAACAAGCGCACCAAACAGCAGATGAACGCCGAGCTGAATCTATTCC
TAGGCGATCAAACTGACCTCTTTGTCACCTGGCTGCACGAAGTGCTGCAA
AAGCTCCAAGAGGTCACACTCCCCACATCCAGTGCTTCCAGCAAGAAGCG
CAAGTCTCGCGGTCAGGAGAAGGACAAAAAAGGATCCAAGAAGGATAAGC
GACCGCACCGAAAGTCCGGAGATGAGCTGTCGGAACCACAGCCAAGTTCC
TCAGATGCCATGCCAATTGTCAGTTCCATCACGGATGTTTTTGCCGAAGA
GCTTCTCGAGAAGGCAAAGAAAACCATGGACATTGATCTCAGTGCCAAAG
ACGAGATCCTGCACAAAAAGAAAAATCGCAAGTCCATCGAGGATGAGGAT
GCATCGGCCAATAGGGCGCTGGATGTGCCCGCTGTGTCTGAGATCATCTC
AACTACTATCGGTGTTAACCGGCAAAAAGACCTCGCTGAGCTGGCCGAAA
TCCAAAAGAAAATTCATGCAGCCAAGAAGCATTTACGCCAGATTGGCGAG
ATCGGGGATGAAAGCGATGAATATGATGAGGATCTGTTGAACTTGAGCGC
GAGGGAGGAGTCTGTAGACCAGGAGCCAGAAGAGGATCCCCCGAAATTGG
AGGCTCCACCACGAAAAGCTAAGAGCCCCATTATTTTTAACAGACGCGAG
AAGACACCCGAAAAGCGTCCAGAGGCTGAACCGGAGATCGATTCCCGCCA
GGAGGAGGCGGAGGAGAAGAGCCCCAAAAAAGATTCTTCGGCTGACAAGG
CCAAGGAAGACCGGTCTGAAAGGCGATCGGTGCATGACCGTCTCGGTTCA
AAGGCCCAAACGCCGGCAGATCGTTCGCAGCGCAACCAAAAGGAGCTCTA
TGTGCCGACCCATCGGCGACGGAGCGAACCCGAGGCCACCAAAGAGCGCA
GTCAAAGAGAGCGCACCCGAGAACGACGCTCCAGCCGCGATACCTCTAGG
GACACTAACCGTAATCAGCGCCAGCGTCGTTCGCCTAGTCCGGAGGCTCC
AAGTACAAAGCAACGCATTGTCTCCCAAGTTATTGTGGCCGTTAACAAGC
CACCGGAGCCGTCGGACGATGAGGATATGGCCGAAAAGCCAGTCAACTCC
GTTATTAAGGTCAAGCCAAGACCAAATGTTTCTCCCAGACGACAGGCCTG
CAAGAACCTCCTGCTGCGAGCAGTGGCGGACGCGCAGCGTTCCACAATCC
TCGCCAAGACTTCGACACAGAAGGAGGACGAGGATGTGGGCAAGATCATA
AGTTCTCTAGGCAAGCGCAAGTCGGAGGATAAGAATGATCAGATTCGTAA
ACGGAATCGCGAGAGGAAACGAAGAAAGAGAAGTGCACAAGGCAACGAAC
TCTTCCGGCGCACCACTCGGGAATTAGTGGTAAATGTGACACAAAGGGAT
GGAAAGCGTGAACGGCGGTCCAACGAGCGTCGCGCCGAGATCAAAGTGGT
GGAGGAAGAATATACGCCAAGCCTAATGACTGAGGGCGTCGAGACGTATG
TGCCGCAATTGCTGACCAACGTGGATGAATTGGATTTGCACATCAGCTCC
CACGACGAGCCAAGTCCCAATTCCGGAGCCCTCAAGACTCAGTTTGTGGT
CACGTTAAACGGCGACAAAGCTCTCGGAGGTAAGAATGTCAAGGGAGGGG
CCTCTCGCAAGCGGCCGAGCAACTCTCGTAAACGATCCACCTCACCCGTA
TCCACGCCACAAGTGTCCTCCTCTAATATTGAGCCCACATCTACGACGGT
TGACAAGCGACGCCGATCCAATCGGGATAGAAGCTTCTCGCCATCGCCGA
GACAGAGCAGTGGGTCACCCTCCCTGCCGACAACACGCAGCATCAATCGC
AACGAGGTACGCCGTCAGCCTCAGGAAATCAAGAAGATCATCATAAAAAA
TGACACCGATGAAGATGATGAAATGCACGGGTCACCGAAGAAACGATCAC
CAAACAAGCGCCAGCCAGCGGCGGCCAATGGTCACAAGGACAATAAGGAT
AAGGGTAAAATCGAGGAAGGCTCAACAACTCCACCGCTGCCAGCCAAACC
AAAGGCGCGGGCGGAGAAGAAAGCTTCCAGCAAGGAGAAATCCGTAAGAT
CTAATTCAGCGGAGACGTCATCGGCCGCCAAATCTGTCAGTGCGTCCACT
TCCGTTTCGACAACTACCAAAGCCAAGCACACGCCCATTCGCTTCACTCT
TAAAAGTGAGGACGAGCCGAGTGCGAGTAAGAAGCGTCGTTCTGGCAGCC
CCGATCGTGATGTCGCGGCTCCGGAGAGACGCAGGGTATCCATACGCAAT
CCGGAGGACAGGAAATACGACAACTTGCCGGCGTTGAGCGCAGTTAGCGT
GGATTCCACCGTGCTGAAGGTGAACAAACCCAAGGAGCGCTGCAAATATC
ATCCAAACTGCACAAAGCAGTTCTGTGAGTACTATCATCCAACGGCGCCG
TGCAAGTCTTTCCCCAACTGCAAATTCGCGGACAAGTGCATGTACTCGCA
TCCGAAGTGCAAATTCGACATGGCCTGCATGAGCATAGACTGCAACTACG
CCCATGGCGGTCAAAGGGATCTAAGCCATGTCCAGCTTGCTGCTCCACCA
CTATCCTCTCACGTCATCCCAGTGCAGAACTACAAGTCGATATCGGCTCC
TGTTACATCCACGACTGCGACTACCATGTGCAAGTACTATCCGAATTGTT
CCAAGCTGGGCTGCACCTTCTATCATCCCAAGCCCTGCCGCTTCGGCAAG
AACTGCGTAAACAAGCTGGAGTGCATCTTCTACCATCCTGAGATGCAGAG
CAAATTCAAGTGGGTGGCATCTTTGGGCGCAAGCTTTCTAGACCAT

BO05862.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3015 CG5720-PA 1..3012 17..3028 15060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-RA 3490 CG5720-RA 162..3175 15..3028 15070 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24315592..24317842 2534..284 11255 100 Minus
3R 32079331 3R 24315260..24315529 2804..2535 1350 100 Minus
3R 32079331 3R 24317896..24318121 284..59 1130 100 Minus
3R 32079331 3R 24314975..24315198 3028..2805 1120 100 Minus
3R 32079331 3R 24318215..24318258 58..15 220 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:43:58 has no hits.

BO05862.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:01 Download gff for BO05862.complete
Subject Subject Range Query Range Percent Splice Strand
CG5720-RA 157..3179 9..3032 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:24 Download gff for BO05862.complete
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 164..3175 17..3030 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:37 Download gff for BO05862.complete
Subject Subject Range Query Range Percent Splice Strand
CG5720-RA 165..3176 17..3030 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:09 Download gff for BO05862.complete
Subject Subject Range Query Range Percent Splice Strand
Nab2-RA 164..3175 17..3030 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:09 Download gff for BO05862.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24317896..24318121 59..284 100 <- Minus
3R 24318215..24318256 17..58 100   Minus
3R 24314973..24315198 2805..3030 99 <- Minus
3R 24315260..24315529 2535..2804 100 <- Minus
3R 24315592..24317841 285..2534 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:24 Download gff for BO05862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20140695..20140920 2805..3030 99 <- Minus
arm_3R 20140982..20141251 2535..2804 100 <- Minus
arm_3R 20141314..20143563 285..2534 100 <- Minus
arm_3R 20143618..20143843 59..284 100 <- Minus
arm_3R 20143937..20143978 17..58 100   Minus

BO05862.pep Sequence

Translation from 16 to 3046

> BO05862.pep
MECNLGSEIGQKMRSAVKAKLLELGTGGSAGFIDDELPDYVMVMVANKRT
KQQMNAELNLFLGDQTDLFVTWLHEVLQKLQEVTLPTSSASSKKRKSRGQ
EKDKKGSKKDKRPHRKSGDELSEPQPSSSDAMPIVSSITDVFAEELLEKA
KKTMDIDLSAKDEILHKKKNRKSIEDEDASANRALDVPAVSEIISTTIGV
NRQKDLAELAEIQKKIHAAKKHLRQIGEIGDESDEYDEDLLNLSAREESV
DQEPEEDPPKLEAPPRKAKSPIIFNRREKTPEKRPEAEPEIDSRQEEAEE
KSPKKDSSADKAKEDRSERRSVHDRLGSKAQTPADRSQRNQKELYVPTHR
RRSEPEATKERSQRERTRERRSSRDTSRDTNRNQRQRRSPSPEAPSTKQR
IVSQVIVAVNKPPEPSDDEDMAEKPVNSVIKVKPRPNVSPRRQACKNLLL
RAVADAQRSTILAKTSTQKEDEDVGKIISSLGKRKSEDKNDQIRKRNRER
KRRKRSAQGNELFRRTTRELVVNVTQRDGKRERRSNERRAEIKVVEEEYT
PSLMTEGVETYVPQLLTNVDELDLHISSHDEPSPNSGALKTQFVVTLNGD
KALGGKNVKGGASRKRPSNSRKRSTSPVSTPQVSSSNIEPTSTTVDKRRR
SNRDRSFSPSPRQSSGSPSLPTTRSINRNEVRRQPQEIKKIIIKNDTDED
DEMHGSPKKRSPNKRQPAAANGHKDNKDKGKIEEGSTTPPLPAKPKARAE
KKASSKEKSVRSNSAETSSAAKSVSASTSVSTTTKAKHTPIRFTLKSEDE
PSASKKRRSGSPDRDVAAPERRRVSIRNPEDRKYDNLPALSAVSVDSTVL
KVNKPKERCKYHPNCTKQFCEYYHPTAPCKSFPNCKFADKCMYSHPKCKF
DMACMSIDCNYAHGGQRDLSHVQLAAPPLSSHVIPVQNYKSISAPVTSTT
ATTMCKYYPNCSKLGCTFYHPKPCRFGKNCVNKLECIFYHPEMQSKFKWV
ASLGASFLDH

BO05862.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Nab2-PA 1004 CG5720-PA 1..1004 1..1004 5164 100 Plus
CG7971-PG 1062 CG7971-PG 226..827 167..830 237 19.6 Plus
CG7971-PA 1062 CG7971-PA 226..827 167..830 237 19.6 Plus
CG7971-PC 1107 CG7971-PC 226..827 167..830 237 19.6 Plus
CG7971-PF 1655 CG7971-PF 451..1052 167..830 237 19.6 Plus
CG7971-PG 1062 CG7971-PG 165..942 11..853 222 20.4 Plus
CG7971-PA 1062 CG7971-PA 165..942 11..853 222 20.4 Plus
CG7971-PC 1107 CG7971-PC 165..942 11..853 222 20.4 Plus
CG7971-PG 1062 CG7971-PG 27..689 112..824 205 18.1 Plus
CG7971-PA 1062 CG7971-PA 27..689 112..824 205 18.1 Plus
CG7971-PC 1107 CG7971-PC 27..689 112..824 205 18.1 Plus