Clone Sequence Records
BO05866.3prime Sequence
863 bp (826 high quality bases) assembled on 2005-12-02
> BO05866.3prime
ATGGTCTAGAAAGCTTGCGTAGCGTCGTCGGTCACGCTCTCCTCGCGAGT
CCCGTTCCCGCTGGTCGTGACGGCCACGGTCACGTTCTCGCTCTCGTTCC
CTATCCCGGCGATCTCTGTCGCCGTCCCTCTCGCGCTCCCTGATACTGTC
GCGATCTTGGCGCTCTCGTTCGCGATCGTGGCGTCCATTGTTTTGCCGAC
GGTCATAGTCCTCGTTGTGGGTGTCCCGATTGCGCACCCTATTTCGCTGG
CGGTCGTAGTCTTCCAGTTCGTCGTAGTAATCCCGGGAACGGGCGCTGTT
GCCCTGCCCAGATCTTCGCTCGCGCTCCCGACTGCGGGACCTTGACTTGG
AGCGAACTCTCCGTGGTCGTCTCACTGCTGTCGAATTCTCCTTAGGCCGG
TTGGTCTCGTCTGCCTTCTCCTCGTCGCTGGGCAGTTCGTCGTCCAAGTC
CTCATCCAGCACTGACACCTTGGGCTCGATTTCGTTGTTTTCCTCGAGAA
TGGAGCGCTTCTGGATGCGGGGCAGTATAATGTCGCAGACACGGTCGTTG
CGCAGCAGTTCGTCAATGTACTCATCCATGTAGACAATCTCGAACTGGCC
GGCGCGATTCTGGCGGCGCAGCTTTCGATTGTCTATGTACAACGGCTCCA
GGTACTTGTAGCAGTCCAGGGCAGCTCCTGTGAGCCGTAGATAGAAGGCT
CCCAATGCTCGAACGTACTTGAACTCCTCGTTCTTGATAAACTCCACTAC
GATGTCCTTTTCCGGCTGAATCTGCAGCATCTTGAGTGTGAGGCAGAGGA
ACTGGGTGGGCTTGATGTTGCCGCCGTAGACGCCTCCGACGAATCGCAGC
TCCATTGCCTTGT
BO05866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30342-PA | 993 | CG30342-RA | 146..990 | 863..19 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp38-RA | 1196 | CG30342-RA | 318..1162 | 863..19 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9144273..9145117 | 863..19 | 4225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:02:32 has no hits.
BO05866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:21 Download gff for
BO05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30342-PA | 146..993 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:38 Download gff for
BO05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30342-PA | 146..993 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:25 Download gff for
BO05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp38-RA | 318..1169 | 11..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:57 Download gff for
BO05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp38-RA | 318..1169 | 11..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:57 Download gff for
BO05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9144273..9145124 | 11..863 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:25 Download gff for
BO05866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5031778..5032629 | 11..863 | 99 | | Minus |
BO05866.5prime Sequence
965 bp (778 high quality bases) assembled on 2005-11-29
> BO05866.5prime
GAAGTTATCAGTCGACATGGCCAACCGCACGGTGAAGGAGGCCAAAAACG
TGCACGGCACCAATCCGCAGTACCTCATCGAGAAGATCATCCGTTCGAGG
ATATACGACTCTAAGTACTGGAAGGAGCAATGCTTTGCTCTCACTGCGGA
GCTTCTGGTGGACAAGGCAATGGAGCTGCGATTCGTCGGAGGCGTCTACG
GCGGCAACATCAAGCCCACCCAGTTCCTCTGCCTCACACTCAAGATGCTG
CAGATTCAGCCGGAAAAGGACATCGTAGTGGAGTTTATCAAGAACGAGGA
GTTCAAGTACGTTCGAGCATTGGGAGCCTTCTATCTACGGCTCACAGGAG
CTGCCCTGGACTGCTACAAGTACCTGGAGCCGTTGTACATAGACAATCGA
AAGCTGCGCCGCCAGAATCGCGCCGGCCAGTTCGAGATTGTCTACATGGA
TGAGTACATTGACGAACTGCTGCGCAACGACCGTGTCTGCGACATTATAC
TGCCCCGCATCCAGAAGCGCTCCATTCTCGAGGAAAACAACGAAATCGAG
CCCAAGGTGTCAGTGCTGGATGAGGACTTGGACGACGAACTGCCCAGCGA
CGAGGAGAAGGCAGACGAGACCAACCGGCCTAAGGAGAATTCGACAGCAG
TGAGACGACCACGGAGAGTTCGCTCCAAGTCAAGGTCCCGCAGTCGGGAG
CGCGAGCGAAGATCTGGGCAGGGCAACAGCGCCCGTTCCCGGGATTACTA
CGACGAACTGGAAGACTACGACCGCCAGCGAAATAGGGTGCGCAATCGGG
ACACCCACAACGAGGACTATGACCGTCGGCAAAACAATGGACGCCACGAT
CGCGAACGAGAGCGCCNAGATCGCGACAGTATCAGGGAGCGCGAGAGGGA
CGGCGACAGAGATCGCCGGGATAGGGGACGAGAGCGAGAACGTGACCGTG
GGCGTCACGACCAGC
BO05866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30342-PA | 993 | CG30342-RA | 1..949 | 17..965 | 4676 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp38-RA | 1196 | CG30342-RA | 173..1121 | 17..965 | 4704 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9144128..9145076 | 17..965 | 4704 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:59:08 has no hits.
BO05866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:22 Download gff for
BO05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30342-PA | 1..949 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:39 Download gff for
BO05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30342-PA | 1..949 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:31 Download gff for
BO05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp38-RA | 173..1121 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:25 Download gff for
BO05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp38-RA | 173..1121 | 17..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:25 Download gff for
BO05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9144128..9145076 | 17..965 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:31 Download gff for
BO05866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5031633..5032581 | 17..965 | 99 | | Plus |
BO05866.complete Sequence
1024 bp (1024 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630175
> BO05866.complete
GAAGTTATCAGTCGACATGGCCAACCGCACGGTGAAGGAGGCCAAAAACG
TGCACGGCACCAATCCGCAGTACCTCATCGAGAAGATCATCCGTTCGAGG
ATATACGACTCTAAGTACTGGAAGGAGCAATGCTTTGCTCTCACTGCGGA
GCTTCTGGTGGACAAGGCAATGGAGCTGCGATTCGTCGGAGGCGTCTACG
GCGGCAACATCAAGCCCACCCAGTTCCTCTGCCTCACACTCAAGATGCTG
CAGATTCAGCCGGAAAAGGACATCGTAGTGGAGTTTATCAAGAACGAGGA
GTTCAAGTACGTTCGAGCATTGGGAGCCTTCTATCTACGGCTCACAGGAG
CTGCCCTGGACTGCTACAAGTACCTGGAGCCGTTGTACATAGACAATCGA
AAGCTGCGCCGCCAGAATCGCGCCGGCCAGTTCGAGATTGTCTACATGGA
TGAGTACATTGACGAACTGCTGCGCAACGACCGTGTCTGCGACATTATAC
TGCCCCGCATCCAGAAGCGCTCCATTCTCGAGGAAAACAACGAAATCGAG
CCCAAGGTGTCAGTGCTGGATGAGGACTTGGACGACGAACTGCCCAGCGA
CGAGGAGAAGGCAGACGAGACCAACCGGCCTAAGGAGAATTCGACAGCAG
TGAGACGACCACGGAGAGTTCGCTCCAAGTCAAGGTCCCGCAGTCGGGAG
CGCGAGCGAAGATCTGGGCAGGGCAACAGCGCCCGTTCCCGGGATTACTA
CGACGAACTGGAAGACTACGACCGCCAGCGAAATAGGGTGCGCAATCGGG
ACACCCACAACGAGGACTATGACCGTCGGCAAAACAATGGACGCCACGAT
CGCGAACGAGAGCGCCAAGATCGCGACAGTATCAGGGAGCGCGAGAGGGA
CGGCGACAGAGATCGCCGGGATAGGGAACGAGAGCGAGAACGTGACCGTG
GCCGTCACGACCAGCGGGAACGGGACTCGCGAGGAGAGCGTGACCGACGA
CGCTACGCAAGCTTTCTAGACCAT
BO05866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp38-RA | 993 | CG30342-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp38-RA | 1196 | CG30342-RA | 173..1162 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9144128..9145117 | 17..1006 | 4950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:44:57 has no hits.
BO05866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:10 Download gff for
BO05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30342-RA | 1..993 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:25 Download gff for
BO05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30342-RA | 170..1166 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:50 Download gff for
BO05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp38-RA | 173..1162 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:10 Download gff for
BO05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30342-RA | 170..1166 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:03 Download gff for
BO05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp38-RA | 173..1162 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:03 Download gff for
BO05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9144128..9145117 | 17..1008 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:50 Download gff for
BO05866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5031633..5032622 | 17..1008 | 99 | | Plus |
BO05866.pep Sequence
Translation from 16 to 1024
> BO05866.pep
MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDK
AMELRFVGGVYGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVR
ALGAFYLRLTGAALDCYKYLEPLYIDNRKLRRQNRAGQFEIVYMDEYIDE
LLRNDRVCDIILPRIQKRSILEENNEIEPKVSVLDEDLDDELPSDEEKAD
ETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSARSRDYYDELED
YDRQRNRVRNRDTHNEDYDRRQNNGRHDRERERQDRDSIRERERDGDRDR
RDRERERERDRGRHDQRERDSRGERDRRRYASFLDH
BO05866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp38-PA | 330 | CG30342-PA | 1..330 | 1..330 | 1722 | 100 | Plus |
CG2839-PA | 826 | CG2839-PA | 420..623 | 127..329 | 177 | 27.1 | Plus |
CG6340-PB | 513 | CG6340-PB | 60..192 | 193..324 | 176 | 32.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 479..641 | 166..329 | 174 | 28.3 | Plus |
SF1-PC | 323 | CG5836-PC | 33..133 | 217..329 | 172 | 41.5 | Plus |
SF1-PB | 347 | CG5836-PB | 33..133 | 217..329 | 172 | 41.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 266..419 | 166..329 | 169 | 25.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 281..447 | 163..329 | 167 | 26 | Plus |
CG2839-PA | 826 | CG2839-PA | 320..475 | 164..329 | 167 | 25.3 | Plus |
SF1-PC | 323 | CG5836-PC | 48..172 | 195..328 | 165 | 35.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 302..464 | 164..329 | 161 | 24.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 356..524 | 164..329 | 160 | 24.7 | Plus |
CG2839-PA | 826 | CG2839-PA | 473..629 | 166..329 | 160 | 28.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 364..530 | 166..329 | 159 | 24.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 377..541 | 166..329 | 157 | 26.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 497..657 | 172..329 | 156 | 23 | Plus |
CG2839-PA | 826 | CG2839-PA | 532..687 | 172..329 | 156 | 22.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 531..671 | 189..329 | 155 | 26.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 563..725 | 164..329 | 155 | 24.4 | Plus |
SF1-PC | 323 | CG5836-PC | 1..166 | 181..328 | 153 | 32.1 | Plus |