Clone BO05866 Report

Search the DGRC for BO05866

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptPrp38-RA
Protein status:BO05866.pep: validated full length
Sequenced Size:1024

Clone Sequence Records

BO05866.3prime Sequence

863 bp (826 high quality bases) assembled on 2005-12-02

> BO05866.3prime
ATGGTCTAGAAAGCTTGCGTAGCGTCGTCGGTCACGCTCTCCTCGCGAGT
CCCGTTCCCGCTGGTCGTGACGGCCACGGTCACGTTCTCGCTCTCGTTCC
CTATCCCGGCGATCTCTGTCGCCGTCCCTCTCGCGCTCCCTGATACTGTC
GCGATCTTGGCGCTCTCGTTCGCGATCGTGGCGTCCATTGTTTTGCCGAC
GGTCATAGTCCTCGTTGTGGGTGTCCCGATTGCGCACCCTATTTCGCTGG
CGGTCGTAGTCTTCCAGTTCGTCGTAGTAATCCCGGGAACGGGCGCTGTT
GCCCTGCCCAGATCTTCGCTCGCGCTCCCGACTGCGGGACCTTGACTTGG
AGCGAACTCTCCGTGGTCGTCTCACTGCTGTCGAATTCTCCTTAGGCCGG
TTGGTCTCGTCTGCCTTCTCCTCGTCGCTGGGCAGTTCGTCGTCCAAGTC
CTCATCCAGCACTGACACCTTGGGCTCGATTTCGTTGTTTTCCTCGAGAA
TGGAGCGCTTCTGGATGCGGGGCAGTATAATGTCGCAGACACGGTCGTTG
CGCAGCAGTTCGTCAATGTACTCATCCATGTAGACAATCTCGAACTGGCC
GGCGCGATTCTGGCGGCGCAGCTTTCGATTGTCTATGTACAACGGCTCCA
GGTACTTGTAGCAGTCCAGGGCAGCTCCTGTGAGCCGTAGATAGAAGGCT
CCCAATGCTCGAACGTACTTGAACTCCTCGTTCTTGATAAACTCCACTAC
GATGTCCTTTTCCGGCTGAATCTGCAGCATCTTGAGTGTGAGGCAGAGGA
ACTGGGTGGGCTTGATGTTGCCGCCGTAGACGCCTCCGACGAATCGCAGC
TCCATTGCCTTGT

BO05866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30342-PA 993 CG30342-RA 146..990 863..19 4225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Prp38-RA 1196 CG30342-RA 318..1162 863..19 4225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9144273..9145117 863..19 4225 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:02:32 has no hits.

BO05866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:21 Download gff for BO05866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30342-PA 146..993 15..863 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:38 Download gff for BO05866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30342-PA 146..993 15..863 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:25 Download gff for BO05866.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp38-RA 318..1169 11..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:57 Download gff for BO05866.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp38-RA 318..1169 11..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:57 Download gff for BO05866.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9144273..9145124 11..863 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:25 Download gff for BO05866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5031778..5032629 11..863 99   Minus

BO05866.5prime Sequence

965 bp (778 high quality bases) assembled on 2005-11-29

> BO05866.5prime
GAAGTTATCAGTCGACATGGCCAACCGCACGGTGAAGGAGGCCAAAAACG
TGCACGGCACCAATCCGCAGTACCTCATCGAGAAGATCATCCGTTCGAGG
ATATACGACTCTAAGTACTGGAAGGAGCAATGCTTTGCTCTCACTGCGGA
GCTTCTGGTGGACAAGGCAATGGAGCTGCGATTCGTCGGAGGCGTCTACG
GCGGCAACATCAAGCCCACCCAGTTCCTCTGCCTCACACTCAAGATGCTG
CAGATTCAGCCGGAAAAGGACATCGTAGTGGAGTTTATCAAGAACGAGGA
GTTCAAGTACGTTCGAGCATTGGGAGCCTTCTATCTACGGCTCACAGGAG
CTGCCCTGGACTGCTACAAGTACCTGGAGCCGTTGTACATAGACAATCGA
AAGCTGCGCCGCCAGAATCGCGCCGGCCAGTTCGAGATTGTCTACATGGA
TGAGTACATTGACGAACTGCTGCGCAACGACCGTGTCTGCGACATTATAC
TGCCCCGCATCCAGAAGCGCTCCATTCTCGAGGAAAACAACGAAATCGAG
CCCAAGGTGTCAGTGCTGGATGAGGACTTGGACGACGAACTGCCCAGCGA
CGAGGAGAAGGCAGACGAGACCAACCGGCCTAAGGAGAATTCGACAGCAG
TGAGACGACCACGGAGAGTTCGCTCCAAGTCAAGGTCCCGCAGTCGGGAG
CGCGAGCGAAGATCTGGGCAGGGCAACAGCGCCCGTTCCCGGGATTACTA
CGACGAACTGGAAGACTACGACCGCCAGCGAAATAGGGTGCGCAATCGGG
ACACCCACAACGAGGACTATGACCGTCGGCAAAACAATGGACGCCACGAT
CGCGAACGAGAGCGCCNAGATCGCGACAGTATCAGGGAGCGCGAGAGGGA
CGGCGACAGAGATCGCCGGGATAGGGGACGAGAGCGAGAACGTGACCGTG
GGCGTCACGACCAGC

BO05866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30342-PA 993 CG30342-RA 1..949 17..965 4676 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prp38-RA 1196 CG30342-RA 173..1121 17..965 4704 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9144128..9145076 17..965 4704 99.7 Plus
Blast to na_te.dros performed on 2015-02-09 18:59:08 has no hits.

BO05866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:22 Download gff for BO05866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30342-PA 1..949 17..965 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:39 Download gff for BO05866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30342-PA 1..949 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:31 Download gff for BO05866.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp38-RA 173..1121 17..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:25 Download gff for BO05866.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp38-RA 173..1121 17..965 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:25 Download gff for BO05866.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9144128..9145076 17..965 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:31 Download gff for BO05866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5031633..5032581 17..965 99   Plus

BO05866.complete Sequence

1024 bp (1024 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630175

> BO05866.complete
GAAGTTATCAGTCGACATGGCCAACCGCACGGTGAAGGAGGCCAAAAACG
TGCACGGCACCAATCCGCAGTACCTCATCGAGAAGATCATCCGTTCGAGG
ATATACGACTCTAAGTACTGGAAGGAGCAATGCTTTGCTCTCACTGCGGA
GCTTCTGGTGGACAAGGCAATGGAGCTGCGATTCGTCGGAGGCGTCTACG
GCGGCAACATCAAGCCCACCCAGTTCCTCTGCCTCACACTCAAGATGCTG
CAGATTCAGCCGGAAAAGGACATCGTAGTGGAGTTTATCAAGAACGAGGA
GTTCAAGTACGTTCGAGCATTGGGAGCCTTCTATCTACGGCTCACAGGAG
CTGCCCTGGACTGCTACAAGTACCTGGAGCCGTTGTACATAGACAATCGA
AAGCTGCGCCGCCAGAATCGCGCCGGCCAGTTCGAGATTGTCTACATGGA
TGAGTACATTGACGAACTGCTGCGCAACGACCGTGTCTGCGACATTATAC
TGCCCCGCATCCAGAAGCGCTCCATTCTCGAGGAAAACAACGAAATCGAG
CCCAAGGTGTCAGTGCTGGATGAGGACTTGGACGACGAACTGCCCAGCGA
CGAGGAGAAGGCAGACGAGACCAACCGGCCTAAGGAGAATTCGACAGCAG
TGAGACGACCACGGAGAGTTCGCTCCAAGTCAAGGTCCCGCAGTCGGGAG
CGCGAGCGAAGATCTGGGCAGGGCAACAGCGCCCGTTCCCGGGATTACTA
CGACGAACTGGAAGACTACGACCGCCAGCGAAATAGGGTGCGCAATCGGG
ACACCCACAACGAGGACTATGACCGTCGGCAAAACAATGGACGCCACGAT
CGCGAACGAGAGCGCCAAGATCGCGACAGTATCAGGGAGCGCGAGAGGGA
CGGCGACAGAGATCGCCGGGATAGGGAACGAGAGCGAGAACGTGACCGTG
GCCGTCACGACCAGCGGGAACGGGACTCGCGAGGAGAGCGTGACCGACGA
CGCTACGCAAGCTTTCTAGACCAT

BO05866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Prp38-RA 993 CG30342-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
Prp38-RA 1196 CG30342-RA 173..1162 17..1006 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9144128..9145117 17..1006 4950 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:44:57 has no hits.

BO05866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:10 Download gff for BO05866.complete
Subject Subject Range Query Range Percent Splice Strand
CG30342-RA 1..993 17..1010 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:25 Download gff for BO05866.complete
Subject Subject Range Query Range Percent Splice Strand
CG30342-RA 170..1166 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:50 Download gff for BO05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prp38-RA 173..1162 17..1008 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:10 Download gff for BO05866.complete
Subject Subject Range Query Range Percent Splice Strand
CG30342-RA 170..1166 17..1014 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:03 Download gff for BO05866.complete
Subject Subject Range Query Range Percent Splice Strand
Prp38-RA 173..1162 17..1008 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:03 Download gff for BO05866.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9144128..9145117 17..1008 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:50 Download gff for BO05866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5031633..5032622 17..1008 99   Plus

BO05866.pep Sequence

Translation from 16 to 1024

> BO05866.pep
MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDK
AMELRFVGGVYGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVR
ALGAFYLRLTGAALDCYKYLEPLYIDNRKLRRQNRAGQFEIVYMDEYIDE
LLRNDRVCDIILPRIQKRSILEENNEIEPKVSVLDEDLDDELPSDEEKAD
ETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSARSRDYYDELED
YDRQRNRVRNRDTHNEDYDRRQNNGRHDRERERQDRDSIRERERDGDRDR
RDRERERERDRGRHDQRERDSRGERDRRRYASFLDH

BO05866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
Prp38-PA 330 CG30342-PA 1..330 1..330 1722 100 Plus
CG2839-PA 826 CG2839-PA 420..623 127..329 177 27.1 Plus
CG6340-PB 513 CG6340-PB 60..192 193..324 176 32.4 Plus
CG2839-PA 826 CG2839-PA 479..641 166..329 174 28.3 Plus
SF1-PC 323 CG5836-PC 33..133 217..329 172 41.5 Plus
SF1-PB 347 CG5836-PB 33..133 217..329 172 41.5 Plus
CG2839-PA 826 CG2839-PA 266..419 166..329 169 25.6 Plus
CG2839-PA 826 CG2839-PA 281..447 163..329 167 26 Plus
CG2839-PA 826 CG2839-PA 320..475 164..329 167 25.3 Plus
SF1-PC 323 CG5836-PC 48..172 195..328 165 35.3 Plus
CG2839-PA 826 CG2839-PA 302..464 164..329 161 24.1 Plus
CG2839-PA 826 CG2839-PA 356..524 164..329 160 24.7 Plus
CG2839-PA 826 CG2839-PA 473..629 166..329 160 28.9 Plus
CG2839-PA 826 CG2839-PA 364..530 166..329 159 24.6 Plus
CG2839-PA 826 CG2839-PA 377..541 166..329 157 26.9 Plus
CG2839-PA 826 CG2839-PA 497..657 172..329 156 23 Plus
CG2839-PA 826 CG2839-PA 532..687 172..329 156 22.8 Plus
CG2839-PA 826 CG2839-PA 531..671 189..329 155 26.6 Plus
CG2839-PA 826 CG2839-PA 563..725 164..329 155 24.4 Plus
SF1-PC 323 CG5836-PC 1..166 181..328 153 32.1 Plus