Clone Sequence Records
BO05868.3prime Sequence
840 bp (739 high quality bases) assembled on 2005-12-02
> BO05868.3prime
ATGGTCTAGAAAGCTTGCTTCATCGATCTCTCCCAGATACAAAGTCTTAT
CGCTGGATCCAGATAGAATCAGGGGTTCTTTTGGGCTGAAATCCACGGCA
TTGACACTGCCATTGTGTCCGGGCAGCTTGTAAAGAATTCTCCTTGTATT
TACATCCCAAATATAGACATGCCGATCGGCGGAACCCGATGTTATTTTAT
CGCTTCCCGGCGACCAAGCGCATCTCAGCAGATTCTTCTCAAAATTGTGC
TGATGGCCTTGGAATACCTTCACACATCTTTCCCCGGGTGCATAAGGTCT
CACGTCCCACACCCTCAAGGTGTTATCCATGGCATTTGTCAAGATAAAGT
CTCCTTCGGGGGACAAGGACATTCCGGTAATCGTATCCGAATGCCCTCGC
AGATGGTGCAAGACAGCCTGTTTTCGAATGTCCCAGATTTTGACTTCGTT
GTCGATCCCGCCGCTAATTACTTGTTCTCCAGTGTCACCAAAACAAACAG
CTGTGACTTGAAAAGGGGATTCCAAAGTGTGTGCCGCGTGTTTTTTCCTG
GCGTCCCAGATTTTTATGGTGCGATCATCGCTTCCCGAGCAGAGGAGCTG
TTGACCCCTACGCGAGCCCTGAACGCTGTTCACGAAGTTGCCATGCCCCT
TGAACCGCCGTTGCCGCTGGCCCGTGGCTATGTCCCAAAAGGCCAGAGTT
TTATCAGTGGAGCAGGTAAAAATGTGCGATCCATCCGGCGTAAAGTGAGC
TTCCATAACAGCACCGCTGTGTCCCGACATGGCCATCACATTCTCGCAGT
CTTCGTACACTTGCCAGATGTAGATTTGCCTATCGAACCC
BO05868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-PA | 1044 | CG3436-RA | 220..1041 | 840..19 | 4110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1381 | CG3436-RC | 432..1253 | 840..19 | 4110 | 100 | Minus |
CG3436-RA | 1261 | CG3436-RA | 312..1133 | 840..19 | 4110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 156736..157538 | 821..19 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:59:20 has no hits.
BO05868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:25 Download gff for
BO05868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 220..1044 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:44 Download gff for
BO05868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 220..1044 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:33 Download gff for
BO05868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 312..1133 | 19..840 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:26 Download gff for
BO05868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 312..1133 | 19..840 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:26 Download gff for
BO05868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 156534..156552 | 822..840 | 100 | -> | Minus |
2L | 156736..157538 | 19..821 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:33 Download gff for
BO05868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 156534..156552 | 822..840 | 100 | -> | Minus |
arm_2L | 156736..157538 | 19..821 | 100 | | Minus |
BO05868.5prime Sequence
836 bp (812 high quality bases) assembled on 2005-11-29
> BO05868.5prime
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCNAGGCCATCAGCACAATTTTG
BO05868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-PA | 1044 | CG3436-RA | 1..820 | 17..836 | 4081 | 99.8 | Plus |
CG3436-PB | 246 | CG3436-RB | 1..238 | 17..254 | 1190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1381 | CG3436-RC | 213..1032 | 17..836 | 4089 | 99.9 | Plus |
CG3436-RA | 1261 | CG3436-RA | 93..912 | 17..836 | 4089 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 156736..157317 | 255..836 | 2899 | 99.8 | Plus |
2L | 23513712 | 2L | 156422..156552 | 124..254 | 655 | 100 | Plus |
2L | 23513712 | 2L | 156241..156349 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:59:35 has no hits.
BO05868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:26 Download gff for
BO05868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:45 Download gff for
BO05868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:34 Download gff for
BO05868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..912 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:28 Download gff for
BO05868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..912 | 17..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:28 Download gff for
BO05868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 156241..156348 | 17..124 | 100 | -> | Plus |
2L | 156423..156552 | 125..254 | 100 | -> | Plus |
2L | 156736..157317 | 255..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:34 Download gff for
BO05868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 156423..156552 | 125..254 | 100 | -> | Plus |
arm_2L | 156241..156348 | 17..124 | 100 | -> | Plus |
arm_2L | 156736..157317 | 255..836 | 99 | | Plus |
BO05868.complete Sequence
1075 bp (1075 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630176
> BO05868.complete
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCAAGGCCATCAGCACAATTTTGAGAAGAATCTGCTG
AGATGCGCTTGGTCGCCGGGAAGCGATAAAATAACATCGGGTTCCGCCGA
TCGGCATGTCTATATTTGGGATGTAAATACAAGGAGAATTCTTTACAAGC
TGCCCGGACACAATGGCAGTGTCAATGCCGTGGATTTCAGCCCAAAAGAA
CCCCTGATTCTATCTGGATCCAGCGATAAGACTTTGTATCTGGGAGAGAT
CGATGAAGCAAGCTTTCTAGACCAT
BO05868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1044 | CG3436-PC | 1..1041 | 17..1057 | 5205 | 100 | Plus |
CG3436-RA | 1044 | CG3436-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-RC | 1381 | CG3436-RC | 213..1253 | 17..1057 | 5205 | 100 | Plus |
CG3436-RA | 1261 | CG3436-RA | 93..1133 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 156736..157538 | 255..1057 | 4015 | 100 | Plus |
2L | 23513712 | 2L | 156422..156552 | 124..254 | 655 | 100 | Plus |
2L | 23513712 | 2L | 156241..156349 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:01 has no hits.
BO05868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:11 Download gff for
BO05868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 1..1044 | 17..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:26 Download gff for
BO05868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 213..1253 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:49 Download gff for
BO05868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..1133 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:11 Download gff for
BO05868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 213..1253 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:41 Download gff for
BO05868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3436-RA | 93..1133 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:41 Download gff for
BO05868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 156241..156348 | 17..124 | 100 | -> | Plus |
2L | 156423..156552 | 125..254 | 100 | -> | Plus |
2L | 156736..157538 | 255..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:49 Download gff for
BO05868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 156241..156348 | 17..124 | 100 | -> | Plus |
arm_2L | 156423..156552 | 125..254 | 100 | -> | Plus |
arm_2L | 156736..157538 | 255..1059 | 99 | | Plus |
BO05868.pep Sequence
Translation from 16 to 1075
> BO05868.pep
MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQ
LEGHEGEIFTAEFHPEGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGA
VMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSR
RGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGEQVISG
GIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRV
WDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYI
WDVNTRRILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGEIDEASF
LDH
BO05868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3436-PC | 347 | CG3436-PC | 1..347 | 1..347 | 1852 | 100 | Plus |
CG3436-PA | 347 | CG3436-PA | 1..347 | 1..347 | 1852 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 68..360 | 51..346 | 391 | 33.2 | Plus |
wds-PA | 361 | CG17437-PA | 68..360 | 51..346 | 391 | 33.2 | Plus |
Lis-1-PG | 411 | CG8440-PG | 146..409 | 51..344 | 310 | 26.9 | Plus |
wds-PB | 361 | CG17437-PB | 110..361 | 51..305 | 230 | 25.3 | Plus |
wds-PA | 361 | CG17437-PA | 110..361 | 51..305 | 230 | 25.3 | Plus |
wds-PB | 361 | CG17437-PB | 70..276 | 138..351 | 204 | 27.8 | Plus |
wds-PA | 361 | CG17437-PA | 70..276 | 138..351 | 204 | 27.8 | Plus |