Clone BO05868 Report

Search the DGRC for BO05868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG3436-RA
Protein status:BO05868.pep: validated full length
Sequenced Size:1075

Clone Sequence Records

BO05868.3prime Sequence

840 bp (739 high quality bases) assembled on 2005-12-02

> BO05868.3prime
ATGGTCTAGAAAGCTTGCTTCATCGATCTCTCCCAGATACAAAGTCTTAT
CGCTGGATCCAGATAGAATCAGGGGTTCTTTTGGGCTGAAATCCACGGCA
TTGACACTGCCATTGTGTCCGGGCAGCTTGTAAAGAATTCTCCTTGTATT
TACATCCCAAATATAGACATGCCGATCGGCGGAACCCGATGTTATTTTAT
CGCTTCCCGGCGACCAAGCGCATCTCAGCAGATTCTTCTCAAAATTGTGC
TGATGGCCTTGGAATACCTTCACACATCTTTCCCCGGGTGCATAAGGTCT
CACGTCCCACACCCTCAAGGTGTTATCCATGGCATTTGTCAAGATAAAGT
CTCCTTCGGGGGACAAGGACATTCCGGTAATCGTATCCGAATGCCCTCGC
AGATGGTGCAAGACAGCCTGTTTTCGAATGTCCCAGATTTTGACTTCGTT
GTCGATCCCGCCGCTAATTACTTGTTCTCCAGTGTCACCAAAACAAACAG
CTGTGACTTGAAAAGGGGATTCCAAAGTGTGTGCCGCGTGTTTTTTCCTG
GCGTCCCAGATTTTTATGGTGCGATCATCGCTTCCCGAGCAGAGGAGCTG
TTGACCCCTACGCGAGCCCTGAACGCTGTTCACGAAGTTGCCATGCCCCT
TGAACCGCCGTTGCCGCTGGCCCGTGGCTATGTCCCAAAAGGCCAGAGTT
TTATCAGTGGAGCAGGTAAAAATGTGCGATCCATCCGGCGTAAAGTGAGC
TTCCATAACAGCACCGCTGTGTCCCGACATGGCCATCACATTCTCGCAGT
CTTCGTACACTTGCCAGATGTAGATTTGCCTATCGAACCC

BO05868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PA 1044 CG3436-RA 220..1041 840..19 4110 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 432..1253 840..19 4110 100 Minus
CG3436-RA 1261 CG3436-RA 312..1133 840..19 4110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156736..157538 821..19 4015 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:59:20 has no hits.

BO05868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:25 Download gff for BO05868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 220..1044 16..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:44 Download gff for BO05868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 220..1044 16..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:33 Download gff for BO05868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 312..1133 19..840 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:26 Download gff for BO05868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 312..1133 19..840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:26 Download gff for BO05868.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 156534..156552 822..840 100 -> Minus
2L 156736..157538 19..821 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:33 Download gff for BO05868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156534..156552 822..840 100 -> Minus
arm_2L 156736..157538 19..821 100   Minus

BO05868.5prime Sequence

836 bp (812 high quality bases) assembled on 2005-11-29

> BO05868.5prime
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCNAGGCCATCAGCACAATTTTG

BO05868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PA 1044 CG3436-RA 1..820 17..836 4081 99.8 Plus
CG3436-PB 246 CG3436-RB 1..238 17..254 1190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 213..1032 17..836 4089 99.9 Plus
CG3436-RA 1261 CG3436-RA 93..912 17..836 4089 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156736..157317 255..836 2899 99.8 Plus
2L 23513712 2L 156422..156552 124..254 655 100 Plus
2L 23513712 2L 156241..156349 17..125 545 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:59:35 has no hits.

BO05868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:26 Download gff for BO05868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 1..820 17..836 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:45 Download gff for BO05868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-PA 1..820 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:34 Download gff for BO05868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..912 17..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:28 Download gff for BO05868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..912 17..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:28 Download gff for BO05868.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 156241..156348 17..124 100 -> Plus
2L 156423..156552 125..254 100 -> Plus
2L 156736..157317 255..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:34 Download gff for BO05868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156423..156552 125..254 100 -> Plus
arm_2L 156241..156348 17..124 100 -> Plus
arm_2L 156736..157317 255..836 99   Plus

BO05868.complete Sequence

1075 bp (1075 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630176

> BO05868.complete
GAAGTTATCAGTCGACATGGGTACCAAAAGACCCAATAATAGCGTAATTT
TGGCCCAAGAGGCAAAGCGTAGCAAAAATGATCTGATGGCCTACACAAAC
AGGGACAAAGCGCTCCTTGAATCGGGAGTGAGGCGTACCTCAAACCTGCA
GGCGCCCATAATGCAATTAGAAGGACATGAGGGAGAGATTTTCACAGCGG
AATTCCATCCCGAGGGGGAGTTATTGCTTTCTTCTGGGTTCGATAGGCAA
ATCTACATCTGGCAAGTGTACGAAGACTGCGAGAATGTGATGGCCATGTC
GGGACACAGCGGTGCTGTTATGGAAGCTCACTTTACGCCGGATGGATCGC
ACATTTTTACCTGCTCCACTGATAAAACTCTGGCCTTTTGGGACATAGCC
ACGGGCCAGCGGCAACGGCGGTTCAAGGGGCATGGCAACTTCGTGAACAG
CGTTCAGGGCTCGCGTAGGGGTCAACAGCTCCTCTGCTCGGGAAGCGATG
ATCGCACCATAAAAATCTGGGACGCCAGGAAAAAACACGCGGCACACACT
TTGGAATCCCCTTTTCAAGTCACAGCTGTTTGTTTTGGTGACACTGGAGA
ACAAGTAATTAGCGGCGGGATCGACAACGAAGTCAAAATCTGGGACATTC
GAAAACAGGCTGTCTTGCACCATCTGCGAGGGCATTCGGATACGATTACC
GGAATGTCCTTGTCCCCCGAAGGAGACTTTATCTTGACAAATGCCATGGA
TAACACCTTGAGGGTGTGGGACGTGAGACCTTATGCACCCGGGGAAAGAT
GTGTGAAGGTATTCCAAGGCCATCAGCACAATTTTGAGAAGAATCTGCTG
AGATGCGCTTGGTCGCCGGGAAGCGATAAAATAACATCGGGTTCCGCCGA
TCGGCATGTCTATATTTGGGATGTAAATACAAGGAGAATTCTTTACAAGC
TGCCCGGACACAATGGCAGTGTCAATGCCGTGGATTTCAGCCCAAAAGAA
CCCCTGATTCTATCTGGATCCAGCGATAAGACTTTGTATCTGGGAGAGAT
CGATGAAGCAAGCTTTCTAGACCAT

BO05868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1044 CG3436-PC 1..1041 17..1057 5205 100 Plus
CG3436-RA 1044 CG3436-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-RC 1381 CG3436-RC 213..1253 17..1057 5205 100 Plus
CG3436-RA 1261 CG3436-RA 93..1133 17..1057 5205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 156736..157538 255..1057 4015 100 Plus
2L 23513712 2L 156422..156552 124..254 655 100 Plus
2L 23513712 2L 156241..156349 17..125 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:01 has no hits.

BO05868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:11 Download gff for BO05868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 1..1044 17..1060 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:26 Download gff for BO05868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 213..1253 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:49 Download gff for BO05868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..1133 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:11 Download gff for BO05868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 213..1253 17..1057 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:41 Download gff for BO05868.complete
Subject Subject Range Query Range Percent Splice Strand
CG3436-RA 93..1133 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:41 Download gff for BO05868.complete
Subject Subject Range Query Range Percent Splice Strand
2L 156241..156348 17..124 100 -> Plus
2L 156423..156552 125..254 100 -> Plus
2L 156736..157538 255..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:49 Download gff for BO05868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 156241..156348 17..124 100 -> Plus
arm_2L 156423..156552 125..254 100 -> Plus
arm_2L 156736..157538 255..1059 99   Plus

BO05868.pep Sequence

Translation from 16 to 1075

> BO05868.pep
MGTKRPNNSVILAQEAKRSKNDLMAYTNRDKALLESGVRRTSNLQAPIMQ
LEGHEGEIFTAEFHPEGELLLSSGFDRQIYIWQVYEDCENVMAMSGHSGA
VMEAHFTPDGSHIFTCSTDKTLAFWDIATGQRQRRFKGHGNFVNSVQGSR
RGQQLLCSGSDDRTIKIWDARKKHAAHTLESPFQVTAVCFGDTGEQVISG
GIDNEVKIWDIRKQAVLHHLRGHSDTITGMSLSPEGDFILTNAMDNTLRV
WDVRPYAPGERCVKVFQGHQHNFEKNLLRCAWSPGSDKITSGSADRHVYI
WDVNTRRILYKLPGHNGSVNAVDFSPKEPLILSGSSDKTLYLGEIDEASF
LDH

BO05868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3436-PC 347 CG3436-PC 1..347 1..347 1852 100 Plus
CG3436-PA 347 CG3436-PA 1..347 1..347 1852 100 Plus
wds-PB 361 CG17437-PB 68..360 51..346 391 33.2 Plus
wds-PA 361 CG17437-PA 68..360 51..346 391 33.2 Plus
Lis-1-PG 411 CG8440-PG 146..409 51..344 310 26.9 Plus
wds-PB 361 CG17437-PB 110..361 51..305 230 25.3 Plus
wds-PA 361 CG17437-PA 110..361 51..305 230 25.3 Plus
wds-PB 361 CG17437-PB 70..276 138..351 204 27.8 Plus
wds-PA 361 CG17437-PA 70..276 138..351 204 27.8 Plus