Clone Sequence Records
BO05869.3prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-02
> BO05869.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGGCGCACTTGTGCCGCTTGGGTCCTC
GAACGACAGGACATAGCACGGATCGTATGGCCTCGTCGAAGACCGTCTTC
AGACCCTTTTGGGTCAGGGCCGAGCACTCCAGATACTTGACCGCAGCTAT
TTCCTTGGCCATCGCCAGTCCCTGGGGATAGGTGATCGGTGTTAGCTTCT
TGTCCTTCAGCTTCTCGATCGTCTGCTTATCGTCGCGCAGATCCAGTTTG
GTGCCGACCAGGATTATCGGCACACTCGGGCAATGATGACGCACCTCGGG
AAACCATTTGGCTCGCACATTCTCAAACGATGCCGGATTCACCAGTGAGA
AACAGATGAGAAAGACATCCGTTTGCGGATAGGATAGCGGCCTCAGGCGA
TCGTAGTCCTCCTGTCCAGCCGTATCCCAGAGGCCCAGATTGATGGGCTT
GGCATCCACCATCACATTCGCCGAATAGTTGTCGAACACCGTGGGTATGT
ACTCGCCGGGGAAGGCGTTGGTCGTATAGCTGATCAGCAGGCAGGTCTTT
CCCACCGCTCCGTCGCCCACAACCACACACTTGATGGCCTGCATGTCGAC
TGATAACT
BO05869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8556-PA | 579 | Rac2-RA | 1..576 | 594..19 | 2830 | 99.6 | Minus |
CG2248-PA | 579 | Rac1-RA | 25..206 | 570..389 | 535 | 91.7 | Minus |
CG2248-PA | 579 | Rac1-RA | 451..518 | 144..77 | 215 | 92.6 | Minus |
CG2248-PA | 579 | Rac1-RA | 226..305 | 369..290 | 175 | 88.7 | Minus |
CG12530-PA | 576 | Cdc42-RA | 169..233 | 426..362 | 175 | 90.7 | Minus |
CG12530-PB | 576 | Cdc42-RB | 169..233 | 426..362 | 175 | 90.7 | Minus |
CG5588-PB | 588 | Mtl-RB | 175..230 | 429..374 | 155 | 91 | Minus |
CG5588-PA | 588 | Mtl-RA | 175..230 | 429..374 | 155 | 91 | Minus |
CG5588-PC | 588 | Mtl-RC | 175..230 | 429..374 | 155 | 91 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1256 | 595..19 | 2855 | 99.7 | Minus |
Rac2-RA | 1299 | CG8556-RA | 680..1256 | 595..19 | 2855 | 99.7 | Minus |
Rac1-RB | 1805 | CG2248-RB | 337..855 | 595..77 | 1575 | 86.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433935..7434511 | 19..595 | 2855 | 99.7 | Plus |
3L | 28110227 | 3L | 1301829..1302347 | 77..595 | 1575 | 86.9 | Plus |
X | 23542271 | X | 19697956..19698190 | 596..362 | 485 | 80.4 | Minus |
3R | 32079331 | 3R | 27638122..27638186 | 438..374 | 220 | 89.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:02:51 has no hits.
BO05869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:27 Download gff for
BO05869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:46 Download gff for
BO05869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8556-PA | 1..579 | 15..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:26 Download gff for
BO05869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1266 | 10..603 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:01 Download gff for
BO05869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1266 | 10..603 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:01 Download gff for
BO05869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433925..7434515 | 10..603 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:26 Download gff for
BO05869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427025..7427615 | 10..603 | 98 | | Plus |
BO05869.5prime Sequence
608 bp (607 high quality bases) assembled on 2005-11-29
> BO05869.5prime
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACC
BO05869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8556-PA | 579 | Rac2-RA | 1..576 | 17..592 | 2830 | 99.6 | Plus |
CG2248-PA | 579 | Rac1-RA | 25..206 | 41..222 | 535 | 91.7 | Plus |
CG2248-PA | 579 | Rac1-RA | 451..518 | 467..534 | 215 | 92.6 | Plus |
CG2248-PA | 579 | Rac1-RA | 226..305 | 242..321 | 175 | 88.7 | Plus |
CG12530-PA | 576 | Cdc42-RA | 169..233 | 185..249 | 175 | 90.7 | Plus |
CG12530-PB | 576 | Cdc42-RB | 169..233 | 185..249 | 175 | 90.7 | Plus |
CG5588-PB | 588 | Mtl-RB | 175..230 | 182..237 | 155 | 91 | Plus |
CG5588-PA | 588 | Mtl-RA | 175..230 | 182..237 | 155 | 91 | Plus |
CG5588-PC | 588 | Mtl-RC | 175..230 | 182..237 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1256 | 16..592 | 2855 | 99.7 | Plus |
Rac2-RA | 1299 | CG8556-RA | 680..1256 | 16..592 | 2855 | 99.7 | Plus |
Rac1-RB | 1805 | CG2248-RB | 337..855 | 16..534 | 1575 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433935..7434511 | 592..16 | 2855 | 99.7 | Minus |
3L | 28110227 | 3L | 1301829..1302347 | 534..16 | 1575 | 86.9 | Minus |
X | 23542271 | X | 19697956..19698190 | 15..249 | 485 | 80.4 | Plus |
3R | 32079331 | 3R | 27638122..27638186 | 173..237 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:04:31 has no hits.
BO05869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:28 Download gff for
BO05869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:48 Download gff for
BO05869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8556-PA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:59 Download gff for
BO05869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1266 | 8..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:31 Download gff for
BO05869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 676..1266 | 8..601 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:31 Download gff for
BO05869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433925..7434515 | 8..601 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:59 Download gff for
BO05869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427025..7427615 | 8..601 | 98 | | Minus |
BO05869.complete Sequence
610 bp (610 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630177
> BO05869.complete
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACCAT
BO05869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 579 | CG8556-PB | 1..576 | 17..592 | 2850 | 99.7 | Plus |
Rac2-RA | 579 | CG8556-PA | 1..576 | 17..592 | 2850 | 99.7 | Plus |
Rac1-RB | 579 | CG2248-PB | 1..518 | 17..534 | 1570 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-RB | 2429 | CG8556-RB | 680..1256 | 16..592 | 2855 | 99.7 | Plus |
Rac2-RA | 1299 | CG8556-RA | 680..1256 | 16..592 | 2855 | 99.7 | Plus |
Rac1-RB | 1805 | CG2248-RB | 337..855 | 16..534 | 1575 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7433935..7434511 | 592..16 | 2855 | 99.7 | Minus |
3L | 28110227 | 3L | 1301829..1302347 | 534..16 | 1575 | 86.9 | Minus |
X | 23542271 | X | 19697956..19698190 | 15..249 | 485 | 80.4 | Plus |
3R | 32079331 | 3R | 27638122..27638186 | 173..237 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:09:57 has no hits.
BO05869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:16 Download gff for
BO05869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 1..579 | 17..596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:35 Download gff for
BO05869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 665..1255 | 8..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:08 Download gff for
BO05869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 681..1256 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:16 Download gff for
BO05869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 665..1255 | 8..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:13 Download gff for
BO05869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rac2-RA | 681..1256 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:13 Download gff for
BO05869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7433933..7434510 | 17..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:08 Download gff for
BO05869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7427033..7427610 | 17..594 | 99 | | Minus |
BO05869.pep Sequence
Translation from 16 to 610
> BO05869.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPE
VRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIA
AVKYLECSALTQKGLKTVFDEAIRSVLCPVVRGPKRHKCALLASFLDH
BO05869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rac2-PB | 192 | CG8556-PB | 1..192 | 1..192 | 1012 | 100 | Plus |
Rac2-PA | 192 | CG8556-PA | 1..192 | 1..192 | 1012 | 100 | Plus |
Rac1-PB | 192 | CG2248-PB | 1..192 | 1..192 | 949 | 93.2 | Plus |
Rac1-PA | 192 | CG2248-PA | 1..192 | 1..192 | 949 | 93.2 | Plus |
Mtl-PC | 195 | CG5588-PC | 7..195 | 4..192 | 707 | 66.1 | Plus |