Clone BO05869 Report

Search the DGRC for BO05869

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptRac2-RA
Protein status:BO05869.pep: validated full length
Sequenced Size:610

Clone Sequence Records

BO05869.3prime Sequence

608 bp (607 high quality bases) assembled on 2005-12-02

> BO05869.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGGCGCACTTGTGCCGCTTGGGTCCTC
GAACGACAGGACATAGCACGGATCGTATGGCCTCGTCGAAGACCGTCTTC
AGACCCTTTTGGGTCAGGGCCGAGCACTCCAGATACTTGACCGCAGCTAT
TTCCTTGGCCATCGCCAGTCCCTGGGGATAGGTGATCGGTGTTAGCTTCT
TGTCCTTCAGCTTCTCGATCGTCTGCTTATCGTCGCGCAGATCCAGTTTG
GTGCCGACCAGGATTATCGGCACACTCGGGCAATGATGACGCACCTCGGG
AAACCATTTGGCTCGCACATTCTCAAACGATGCCGGATTCACCAGTGAGA
AACAGATGAGAAAGACATCCGTTTGCGGATAGGATAGCGGCCTCAGGCGA
TCGTAGTCCTCCTGTCCAGCCGTATCCCAGAGGCCCAGATTGATGGGCTT
GGCATCCACCATCACATTCGCCGAATAGTTGTCGAACACCGTGGGTATGT
ACTCGCCGGGGAAGGCGTTGGTCGTATAGCTGATCAGCAGGCAGGTCTTT
CCCACCGCTCCGTCGCCCACAACCACACACTTGATGGCCTGCATGTCGAC
TGATAACT

BO05869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8556-PA 579 Rac2-RA 1..576 594..19 2830 99.6 Minus
CG2248-PA 579 Rac1-RA 25..206 570..389 535 91.7 Minus
CG2248-PA 579 Rac1-RA 451..518 144..77 215 92.6 Minus
CG2248-PA 579 Rac1-RA 226..305 369..290 175 88.7 Minus
CG12530-PA 576 Cdc42-RA 169..233 426..362 175 90.7 Minus
CG12530-PB 576 Cdc42-RB 169..233 426..362 175 90.7 Minus
CG5588-PB 588 Mtl-RB 175..230 429..374 155 91 Minus
CG5588-PA 588 Mtl-RA 175..230 429..374 155 91 Minus
CG5588-PC 588 Mtl-RC 175..230 429..374 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1256 595..19 2855 99.7 Minus
Rac2-RA 1299 CG8556-RA 680..1256 595..19 2855 99.7 Minus
Rac1-RB 1805 CG2248-RB 337..855 595..77 1575 86.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433935..7434511 19..595 2855 99.7 Plus
3L 28110227 3L 1301829..1302347 77..595 1575 86.9 Plus
X 23542271 X 19697956..19698190 596..362 485 80.4 Minus
3R 32079331 3R 27638122..27638186 438..374 220 89.2 Minus
Blast to na_te.dros performed on 2015-02-11 16:02:51 has no hits.

BO05869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:27 Download gff for BO05869.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-PA 1..579 15..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:46 Download gff for BO05869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8556-PA 1..579 15..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:26 Download gff for BO05869.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1266 10..603 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:01 Download gff for BO05869.3prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1266 10..603 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:01 Download gff for BO05869.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7433925..7434515 10..603 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:26 Download gff for BO05869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427025..7427615 10..603 98   Plus

BO05869.5prime Sequence

608 bp (607 high quality bases) assembled on 2005-11-29

> BO05869.5prime
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACC

BO05869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8556-PA 579 Rac2-RA 1..576 17..592 2830 99.6 Plus
CG2248-PA 579 Rac1-RA 25..206 41..222 535 91.7 Plus
CG2248-PA 579 Rac1-RA 451..518 467..534 215 92.6 Plus
CG2248-PA 579 Rac1-RA 226..305 242..321 175 88.7 Plus
CG12530-PA 576 Cdc42-RA 169..233 185..249 175 90.7 Plus
CG12530-PB 576 Cdc42-RB 169..233 185..249 175 90.7 Plus
CG5588-PB 588 Mtl-RB 175..230 182..237 155 91 Plus
CG5588-PA 588 Mtl-RA 175..230 182..237 155 91 Plus
CG5588-PC 588 Mtl-RC 175..230 182..237 155 91 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1256 16..592 2855 99.7 Plus
Rac2-RA 1299 CG8556-RA 680..1256 16..592 2855 99.7 Plus
Rac1-RB 1805 CG2248-RB 337..855 16..534 1575 86.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433935..7434511 592..16 2855 99.7 Minus
3L 28110227 3L 1301829..1302347 534..16 1575 86.9 Minus
X 23542271 X 19697956..19698190 15..249 485 80.4 Plus
3R 32079331 3R 27638122..27638186 173..237 220 89.2 Plus
Blast to na_te.dros performed on 2015-02-11 22:04:31 has no hits.

BO05869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:28 Download gff for BO05869.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-PA 1..579 17..596 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:48 Download gff for BO05869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8556-PA 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:59 Download gff for BO05869.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1266 8..601 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:31 Download gff for BO05869.5prime
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 676..1266 8..601 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:31 Download gff for BO05869.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7433925..7434515 8..601 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:59 Download gff for BO05869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427025..7427615 8..601 98   Minus

BO05869.complete Sequence

610 bp (610 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630177

> BO05869.complete
GAAGTTATCAGTCGACATGCAGGCCATCAAGTGTGTGGTTGTGGGCGACG
GAGCGGTGGGAAAGACCTGCCTGCTGATCAGCTATACGACCAACGCCTTC
CCCGGCGAGTACATACCCACGGTGTTCGACAACTATTCGGCGAATGTGAT
GGTGGATGCCAAGCCCATCAATCTGGGCCTCTGGGATACGGCTGGACAGG
AGGACTACGATCGCCTGAGGCCGCTATCCTATCCGCAAACGGATGTCTTT
CTCATCTGTTTCTCACTGGTGAATCCGGCATCGTTTGAGAATGTGCGAGC
CAAATGGTTTCCCGAGGTGCGTCATCATTGCCCGAGTGTGCCGATAATCC
TGGTCGGCACCAAACTGGATCTGCGCGACGATAAGCAGACGATCGAGAAG
CTGAAGGACAAGAAGCTAACACCGATCACCTATCCCCAGGGACTGGCGAT
GGCCAAGGAAATAGCTGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACCC
AAAAGGGTCTGAAGACGGTCTTCGACGAGGCCATACGATCCGTGCTATGT
CCTGTCGTTCGAGGACCCAAGCGGCACAAGTGCGCCCTGCTCGCAAGCTT
TCTAGACCAT

BO05869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 579 CG8556-PB 1..576 17..592 2850 99.7 Plus
Rac2-RA 579 CG8556-PA 1..576 17..592 2850 99.7 Plus
Rac1-RB 579 CG2248-PB 1..518 17..534 1570 86.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-RB 2429 CG8556-RB 680..1256 16..592 2855 99.7 Plus
Rac2-RA 1299 CG8556-RA 680..1256 16..592 2855 99.7 Plus
Rac1-RB 1805 CG2248-RB 337..855 16..534 1575 86.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7433935..7434511 592..16 2855 99.7 Minus
3L 28110227 3L 1301829..1302347 534..16 1575 86.9 Minus
X 23542271 X 19697956..19698190 15..249 485 80.4 Plus
3R 32079331 3R 27638122..27638186 173..237 220 89.2 Plus
Blast to na_te.dros performed on 2014-11-27 20:09:57 has no hits.

BO05869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:16 Download gff for BO05869.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 1..579 17..596 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:35 Download gff for BO05869.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 665..1255 8..601 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:08 Download gff for BO05869.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 681..1256 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:16 Download gff for BO05869.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 665..1255 8..601 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:13 Download gff for BO05869.complete
Subject Subject Range Query Range Percent Splice Strand
Rac2-RA 681..1256 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:13 Download gff for BO05869.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7433933..7434510 17..594 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:08 Download gff for BO05869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7427033..7427610 17..594 99   Minus

BO05869.pep Sequence

Translation from 16 to 610

> BO05869.pep
MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKP
INLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPE
VRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIA
AVKYLECSALTQKGLKTVFDEAIRSVLCPVVRGPKRHKCALLASFLDH

BO05869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rac2-PB 192 CG8556-PB 1..192 1..192 1012 100 Plus
Rac2-PA 192 CG8556-PA 1..192 1..192 1012 100 Plus
Rac1-PB 192 CG2248-PB 1..192 1..192 949 93.2 Plus
Rac1-PA 192 CG2248-PA 1..192 1..192 949 93.2 Plus
Mtl-PC 195 CG5588-PC 7..195 4..192 707 66.1 Plus