Clone Sequence Records
BO05870.3prime Sequence
879 bp (811 high quality bases) assembled on 2005-12-02
> BO05870.3prime
ATGGTCTAGAAAGCTTGCGTCCACCATCTCCATTTGCGTCTCCTCGGATT
CCCGCCAAATGCGCTGCACCATCTCTACCAGCTGCTTCCAGAGCGCCGTC
TTACGCAGGAAGTTGGCAAGGCAGACGAGAATAAAGGCCCAAGCCAGGCC
CAAATAGTAATCCGTCTGCACAATGGGTTTATTAGACAGCGGCTCCATCT
CTGCGCGAGTGAGGATGATCGGATCAATGGCCTGCGGATTCACAGTCTTC
ATATTGGTGTGACTCATTATGAAACTGGCAAAGCTGCTCTTTGTGTCCTT
CCACCCGGGCTCGAATTTGATTAGCGGCCTGCCCTGGTGGAATAGCATCA
GTGTGGGCAGCGAAACGATGCCGAATTCTGCATTGAAACGACCAAACTCA
TAGGCATCCACATAGGCGATGGGTAGCGTGGGAAAGTAATGGGGCAGCAC
GTTGACCATCGAAGCCACACGAGCGCACTCCAAGCTGGATGCGGTGCAGA
AATGGACAAGCACACAGTTGCCCGGCTCGTGGCGCTTGGTGGCATTGCCC
ATGGGCTTAAGCAGATTCACTATATCCTTGGCACTGCGCATTATCAGCAG
TTCCGGCTCGGATGCTGTCTCATTCTCGATATCCCGCTGCAGGCACTTCA
TCATAATAGGTGGCTTTCGAACCGGAGGCAGCTGGTTTAGGTGCATGATG
TGCTCGTCATCCGGGGCACATGTGTGTCGCTCCTTCAGCAAGGTTTCGAA
GCTATAATGGCACTGGCCCCGCGAAACTCCCAGGGAATACACCGTCAAAT
TTGAGAAGAGCCCGAAATACTGGAGGGCACTTAGTAATCCGGAGAGTTCC
GCCTGGGCCTGCGCGGCGCAGAGCAAAAT
BO05870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-PA | 888 | CG8297-RA | 26..885 | 878..19 | 4250 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 1057 | CG8297-RA | 97..956 | 878..19 | 4270 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15934981..15935837 | 875..19 | 4255 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-11 02:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 202..272 | 160..229 | 109 | 63.4 | Plus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7041..7111 | 160..229 | 109 | 63.4 | Plus |
BO05870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:29 Download gff for
BO05870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 24..888 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:49 Download gff for
BO05870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 24..888 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:10 Download gff for
BO05870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 95..961 | 11..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:51 Download gff for
BO05870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 95..961 | 11..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:51 Download gff for
BO05870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15934977..15935842 | 11..879 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:10 Download gff for
BO05870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11822482..11823347 | 11..879 | 98 | | Minus |
BO05870.5prime Sequence
894 bp (776 high quality bases) assembled on 2005-11-29
> BO05870.5prime
GAAGTTATCAGTCGACATGAACCAAAATCTCTTGTTTGTATTTTTGCTCT
GCGCCGCGCAGGGCCAGGCGGAACTCTCCGGATTACTAAGTGCCCTCCAG
TATTTCGGGCTCTTCTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCG
GGGCCAGTGCCATTATAGCTTCGAAACCTTGCTGAAGGAGCGACACACAT
GTGCCCCGGATGACGAGCACATCATGCACCTAAACCAGCTGCCTCCGGTT
CGAAAGCCACCTATTATGATGAAGTGCCTGCAGCGGGATATCGAGAATGA
GACAGCATCCGAGCCGGAACTGCTGATAATGCGCAGTGCCAAGGATATAG
TGAATCTGCTTAAGCCCATGGGCAATGCCACCAAGCGCCACGAGCCGGGC
AACTGTGTGCTTGTCCATTTCTGCACCGCATCCAGCTTGGAGTGCGCTCG
TGTGGCTTCGATGGTCAACGTGCTGCCCCATTACTTTCCCACGCTACCCA
TCGCCTATGTGGATGCCTATGAGTTTGGTCGTTTCAATGCAGAATTCGGC
ATCGTTTCGCTGCCCACACTGATGCTATTCCACCAGGGCAGGCCGCTAAT
CAAATTCGAGCCCGGGTGGAAGGACACAAAGAGCAGCTTTGCCAGTTTCA
TAATGAGTCACACCAATATGAAGACTGTGAATCCGCAGGCCATTGATCCG
ATCATCCTCACTCGCGCAGAGATGGAGCCGCTGTCTAATAAACCCATTGT
GCAGACGGATTACTATTTGGGCCTGGCTTGGGCCTTTATTCTCGTCTGCC
TTGCCAACTTCCTGCGTAAGACGGCGCTCTGGAAGCAGCTGGTAGAGATG
GTGCAGCGCATTTGGCGGGAATCCGAGGAGACGCAAATGGAGAT
BO05870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-PA | 888 | CG8297-RA | 1..878 | 17..894 | 4365 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 1057 | CG8297-RA | 72..949 | 17..894 | 4375 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15934981..15935830 | 45..894 | 4235 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-12 01:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 7041..7111 | 760..691 | 109 | 63.4 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 202..272 | 760..691 | 109 | 63.4 | Minus |
BO05870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:30 Download gff for
BO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:50 Download gff for
BO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:21 Download gff for
BO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..949 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:47 Download gff for
BO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..949 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:47 Download gff for
BO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15934896..15934923 | 17..44 | 100 | -> | Plus |
| 2R | 15934981..15935830 | 45..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:21 Download gff for
BO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11822401..11822428 | 17..44 | 100 | -> | Plus |
| arm_2R | 11822486..11823335 | 45..894 | 99 | | Plus |
BO05870.complete Sequence
919 bp (919 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630178
> BO05870.complete
GAAGTTATCAGTCGACATGAACCAAAATCTCTTGTTTGTATTTTTGCTCT
GCGCCGCGCAGGGCCAGGCGGAACTCTCCGGATTACTAAGTGCCCTCCAG
TATTTCGGGCTCTTCTCAAATTTGACGGTGTATTCCCTGGGAGTTTCGCG
GGGCCAGTGCCATTATAGCTTCGAAACCTTGCTGAAGGAGCGACACACAT
GTGCCCCGGATGACGAGCACATCATGCACCTAAACCAGCTGCCTCCGGTT
CGAAAGCCACCTATTATGATGAAGTGCCTGCAGCGGGATATCGAGAATGA
GACAGCATCCGAGCCGGAACTGCTGATAATGCGCAGTGCCAAGGATATAG
TGAATCTGCTTAAGCCCATGGGCAATGCCACCAAGCGCCACGAGCCGGGC
AACTGTGTGCTTGTCCATTTCTGCACCGCATCCAGCTTGGAGTGCGCTCG
TGTGGCTTCGATGGTCAACGTGCTGCCCCATTACTTTCCCACGCTACCCA
TCGCCTATGTGGATGCCTATGAGTTTGGTCGTTTCAATGCAGAATTCGGC
ATCGTTTCGCTGCCCACACTGATGCTATTCCACCAGGGCAGGCCGCTAAT
CAAATTCGAGCCCGGGTGGAAGGACACAAAGAGCAGCTTTGCCAGTTTCA
TAATGAGTCACACCAATATGAAGACTGTGAATCCGCAGGCCATTGATCCG
ATCATCCTCACTCGCGCAGAGATGGAGCCGCTGTCTAATAAACCCATTGT
GCAGACGGATTACTATTTGGGCCTGGCTTGGGCCTTTATTCTCGTCTGCC
TTGCCAACTTCCTGCGTAAGACGGCGCTCTGGAAGCAGCTGGTAGAGATG
GTGCAGCGCATTTGGCGGGAATCCGAGGAGACGCAAATGGAGATGGTGGA
CGCAAGCTTTCTAGACCAT
BO05870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 888 | CG8297-PA | 1..885 | 17..901 | 4410 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-RA | 1057 | CG8297-RA | 72..956 | 17..901 | 4410 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15934981..15935837 | 45..901 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-28 01:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 202..272 | 760..691 | 109 | 63.4 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7041..7111 | 760..691 | 109 | 63.4 | Minus |
BO05870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:12 Download gff for
BO05870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 1..888 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:28 Download gff for
BO05870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 9..898 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:35 Download gff for
BO05870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..956 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:12 Download gff for
BO05870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 9..898 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:11 Download gff for
BO05870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8297-RA | 72..956 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:11 Download gff for
BO05870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15934896..15934923 | 17..44 | 100 | -> | Plus |
| 2R | 15934981..15935837 | 45..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:35 Download gff for
BO05870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11822401..11822428 | 17..44 | 100 | -> | Plus |
| arm_2R | 11822486..11823342 | 45..903 | 99 | | Plus |
BO05870.pep Sequence
Translation from 16 to 919
> BO05870.pep
MNQNLLFVFLLCAAQGQAELSGLLSALQYFGLFSNLTVYSLGVSRGQCHY
SFETLLKERHTCAPDDEHIMHLNQLPPVRKPPIMMKCLQRDIENETASEP
ELLIMRSAKDIVNLLKPMGNATKRHEPGNCVLVHFCTASSLECARVASMV
NVLPHYFPTLPIAYVDAYEFGRFNAEFGIVSLPTLMLFHQGRPLIKFEPG
WKDTKSSFASFIMSHTNMKTVNPQAIDPIILTRAEMEPLSNKPIVQTDYY
LGLAWAFILVCLANFLRKTALWKQLVEMVQRIWRESEETQMEMVDASFLD
H
BO05870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8297-PA | 295 | CG8297-PA | 1..295 | 1..295 | 1552 | 100 | Plus |
