Clone Sequence Records
BO05871.5prime Sequence
647 bp (646 high quality bases) assembled on 2005-11-29
> BO05871.5prime
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGATGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTGCAAGCTTTCTAGACC
BO05871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1475-PB | 618 | RpL13A-RB | 1..615 | 17..631 | 3025 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 722 | CG1475-RB | 27..641 | 17..631 | 3045 | 99.7 | Plus |
RpL13A-RC | 903 | CG1475-RC | 468..822 | 277..631 | 1745 | 99.4 | Plus |
RpL13A-RC | 903 | CG1475-RC | 27..289 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5625512..5625866 | 277..631 | 1745 | 99.4 | Plus |
3R | 32079331 | 3R | 5624889..5625131 | 37..279 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:44:54 has no hits.
BO05871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:32 Download gff for
BO05871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:53 Download gff for
BO05871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:29 Download gff for
BO05871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..645 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:23:17 Download gff for
BO05871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..645 | 8..636 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:23:17 Download gff for
BO05871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5624890..5625130 | 38..278 | 100 | -> | Plus |
3R | 5625514..5625870 | 279..636 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:29 Download gff for
BO05871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1450612..1450852 | 38..278 | 100 | -> | Plus |
arm_3R | 1451236..1451592 | 279..636 | 98 | | Plus |
BO05871.3prime Sequence
647 bp (646 high quality bases) assembled on 2005-12-02
> BO05871.3prime
ATGGTCTAGAAAGCTTGCAACCTCGTAGCCGTAGGATTTGATGATTTTGT
TGAAGGGCTCGGCGGCCTTCGCGATGTTCTCGCGCGCCTTGACCGTCAGC
TTCTTCAGCTCGCGGTTGTGCTTGAGGGTGACACGGAGCTTGGCCTTGCG
CTTGCGCTCCAGGCTCTTGATCACGTCCTGGTAGTGCCATCCGACCTCGT
GCGACAGGCGACCCACCTGGCAGTACTTGCGGTCGGAGCGCAGGGTCAGC
ACACGCATAGCGATGGGCACGACGACGCGGCGACGCTTGTCGTAGGGCGA
TGGGATGCCGTCGAACACACGCAGACGGGCGAGGGCGGCCTGGCCACGCT
TGGTCTTGTGTGGGATCATGCCTCGGACTGCCTTGTAGAAGATGCGAGAG
GGGGCACGGAAGTGGAATGGACCACGGGCTGGGTTCACGTTGCACCGCTT
GCGCAGGTAGGCCAGGAACTTGATCTTGTTCCTGTAGAAGTGTCCCGAGA
GGTTCAGCTCCTCGCAGCGGACCACGGCCACCTTGCCGCCCTGCAACAGG
TACTTGGCCACCACGGAGGCCAGGCGACCGAGCAAATGGCCGCGACCATC
AATAACAACGGTCCTGTTCGTTAAACCAGTCATGTCGACTGATAACT
BO05871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1475-PB | 618 | RpL13A-RB | 1..615 | 633..19 | 3025 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 722 | CG1475-RB | 27..641 | 633..19 | 3045 | 99.7 | Minus |
RpL13A-RC | 903 | CG1475-RC | 468..822 | 373..19 | 1745 | 99.4 | Minus |
RpL13A-RC | 903 | CG1475-RC | 27..289 | 633..371 | 1315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5625512..5625866 | 373..19 | 1745 | 99.4 | Minus |
3R | 32079331 | 3R | 5624889..5625131 | 613..371 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:55:52 has no hits.
BO05871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:31 Download gff for
BO05871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 15..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:51 Download gff for
BO05871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1475-PB | 1..618 | 15..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:31 Download gff for
BO05871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..645 | 14..642 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:40 Download gff for
BO05871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 19..645 | 14..642 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:40 Download gff for
BO05871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5624890..5625130 | 372..612 | 100 | -> | Minus |
3R | 5625514..5625870 | 14..371 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:31 Download gff for
BO05871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1450612..1450852 | 372..612 | 100 | -> | Minus |
arm_3R | 1451236..1451592 | 14..371 | 98 | | Minus |
BO05871.complete Sequence
649 bp (649 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630179
> BO05871.complete
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGATGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTGCAAGCTTTCTAGACCAT
BO05871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 618 | CG1475-PB | 1..615 | 17..631 | 3045 | 99.7 | Plus |
RpL13A-RC | 306 | CG1475-PC | 1..263 | 17..279 | 1315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-RB | 722 | CG1475-RB | 27..641 | 17..631 | 3045 | 99.7 | Plus |
RpL13A-RC | 903 | CG1475-RC | 468..822 | 277..631 | 1745 | 99.4 | Plus |
RpL13A-RC | 903 | CG1475-RC | 27..289 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5625512..5625866 | 277..631 | 1745 | 99.4 | Plus |
3R | 32079331 | 3R | 5624889..5625131 | 37..279 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:36:03 has no hits.
BO05871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:13 Download gff for
BO05871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:30 Download gff for
BO05871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 29..655 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:30 Download gff for
BO05871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 27..641 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:13 Download gff for
BO05871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 29..655 | 8..636 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:17 Download gff for
BO05871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL13A-RB | 27..641 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:17 Download gff for
BO05871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5624500..5624520 | 17..37 | 100 | -> | Plus |
3R | 5624890..5625130 | 38..278 | 100 | -> | Plus |
3R | 5625514..5625866 | 279..633 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:30 Download gff for
BO05871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1450222..1450242 | 17..37 | 100 | -> | Plus |
arm_3R | 1450612..1450852 | 38..278 | 100 | -> | Plus |
arm_3R | 1451236..1451588 | 279..633 | 98 | | Plus |
BO05871.pep Sequence
Translation from 16 to 649
> BO05871.pep
MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFY
RNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAA
LARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWH
YQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKS
YGYEVASFLDH
BO05871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL13A-PB | 205 | CG1475-PB | 1..205 | 1..205 | 1058 | 100 | Plus |
RpL13A-PC | 101 | CG1475-PC | 1..88 | 1..88 | 459 | 100 | Plus |