Clone BO05871 Report

Search the DGRC for BO05871

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptRpL13A-RB
Protein status:BO05871.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO05871.5prime Sequence

647 bp (646 high quality bases) assembled on 2005-11-29

> BO05871.5prime
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGATGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTGCAAGCTTTCTAGACC

BO05871.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1475-PB 618 RpL13A-RB 1..615 17..631 3025 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 722 CG1475-RB 27..641 17..631 3045 99.7 Plus
RpL13A-RC 903 CG1475-RC 468..822 277..631 1745 99.4 Plus
RpL13A-RC 903 CG1475-RC 27..289 17..279 1315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5625512..5625866 277..631 1745 99.4 Plus
3R 32079331 3R 5624889..5625131 37..279 1215 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:44:54 has no hits.

BO05871.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:32 Download gff for BO05871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 17..635 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:53 Download gff for BO05871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:29 Download gff for BO05871.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..645 8..636 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:23:17 Download gff for BO05871.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..645 8..636 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:23:17 Download gff for BO05871.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5624890..5625130 38..278 100 -> Plus
3R 5625514..5625870 279..636 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:29 Download gff for BO05871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1450612..1450852 38..278 100 -> Plus
arm_3R 1451236..1451592 279..636 98   Plus

BO05871.3prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-02

> BO05871.3prime
ATGGTCTAGAAAGCTTGCAACCTCGTAGCCGTAGGATTTGATGATTTTGT
TGAAGGGCTCGGCGGCCTTCGCGATGTTCTCGCGCGCCTTGACCGTCAGC
TTCTTCAGCTCGCGGTTGTGCTTGAGGGTGACACGGAGCTTGGCCTTGCG
CTTGCGCTCCAGGCTCTTGATCACGTCCTGGTAGTGCCATCCGACCTCGT
GCGACAGGCGACCCACCTGGCAGTACTTGCGGTCGGAGCGCAGGGTCAGC
ACACGCATAGCGATGGGCACGACGACGCGGCGACGCTTGTCGTAGGGCGA
TGGGATGCCGTCGAACACACGCAGACGGGCGAGGGCGGCCTGGCCACGCT
TGGTCTTGTGTGGGATCATGCCTCGGACTGCCTTGTAGAAGATGCGAGAG
GGGGCACGGAAGTGGAATGGACCACGGGCTGGGTTCACGTTGCACCGCTT
GCGCAGGTAGGCCAGGAACTTGATCTTGTTCCTGTAGAAGTGTCCCGAGA
GGTTCAGCTCCTCGCAGCGGACCACGGCCACCTTGCCGCCCTGCAACAGG
TACTTGGCCACCACGGAGGCCAGGCGACCGAGCAAATGGCCGCGACCATC
AATAACAACGGTCCTGTTCGTTAAACCAGTCATGTCGACTGATAACT

BO05871.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1475-PB 618 RpL13A-RB 1..615 633..19 3025 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 722 CG1475-RB 27..641 633..19 3045 99.7 Minus
RpL13A-RC 903 CG1475-RC 468..822 373..19 1745 99.4 Minus
RpL13A-RC 903 CG1475-RC 27..289 633..371 1315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5625512..5625866 373..19 1745 99.4 Minus
3R 32079331 3R 5624889..5625131 613..371 1215 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:55:52 has no hits.

BO05871.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:31 Download gff for BO05871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 15..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:51 Download gff for BO05871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1475-PB 1..618 15..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:31 Download gff for BO05871.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..645 14..642 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:40 Download gff for BO05871.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 19..645 14..642 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:40 Download gff for BO05871.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5624890..5625130 372..612 100 -> Minus
3R 5625514..5625870 14..371 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:31 Download gff for BO05871.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1450612..1450852 372..612 100 -> Minus
arm_3R 1451236..1451592 14..371 98   Minus

BO05871.complete Sequence

649 bp (649 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630179

> BO05871.complete
GAAGTTATCAGTCGACATGACTGGTTTAACGAACAGGACCGTTGTTATTG
ATGGTCGCGGCCATTTGCTCGGTCGCCTGGCCTCCGTGGTGGCCAAGTAC
CTGTTGCAGGGCGGCAAGGTGGCCGTGGTCCGCTGCGAGGAGCTGAACCT
CTCGGGACACTTCTACAGGAACAAGATCAAGTTCCTGGCCTACCTGCGCA
AGCGGTGCAACGTGAACCCAGCCCGTGGTCCATTCCACTTCCGTGCCCCC
TCTCGCATCTTCTACAAGGCAGTCCGAGGCATGATCCCACACAAGACCAA
GCGTGGCCAGGCCGCCCTCGCCCGTCTGCGTGTGTTCGACGGCATCCCAT
CGCCCTACGACAAGCGTCGCCGCGTCGTCGTGCCCATCGCTATGCGTGTG
CTGACCCTGCGCTCCGACCGCAAGTACTGCCAGGTGGGTCGCCTGTCGCA
CGAGGTCGGATGGCACTACCAGGACGTGATCAAGAGCCTGGAGCGCAAGC
GCAAGGCCAAGCTCCGTGTCACCCTCAAGCACAACCGCGAGCTGAAGAAG
CTGACGGTCAAGGCGCGCGAGAACATCGCGAAGGCCGCCGAGCCCTTCAA
CAAAATCATCAAATCCTACGGCTACGAGGTTGCAAGCTTTCTAGACCAT

BO05871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 618 CG1475-PB 1..615 17..631 3045 99.7 Plus
RpL13A-RC 306 CG1475-PC 1..263 17..279 1315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-RB 722 CG1475-RB 27..641 17..631 3045 99.7 Plus
RpL13A-RC 903 CG1475-RC 468..822 277..631 1745 99.4 Plus
RpL13A-RC 903 CG1475-RC 27..289 17..279 1315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5625512..5625866 277..631 1745 99.4 Plus
3R 32079331 3R 5624889..5625131 37..279 1215 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:36:03 has no hits.

BO05871.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:13 Download gff for BO05871.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 1..618 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:30 Download gff for BO05871.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 29..655 8..636 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:30 Download gff for BO05871.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 27..641 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:13 Download gff for BO05871.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 29..655 8..636 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:17 Download gff for BO05871.complete
Subject Subject Range Query Range Percent Splice Strand
RpL13A-RB 27..641 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:17 Download gff for BO05871.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5624500..5624520 17..37 100 -> Plus
3R 5624890..5625130 38..278 100 -> Plus
3R 5625514..5625866 279..633 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:30 Download gff for BO05871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1450222..1450242 17..37 100 -> Plus
arm_3R 1450612..1450852 38..278 100 -> Plus
arm_3R 1451236..1451588 279..633 98   Plus

BO05871.pep Sequence

Translation from 16 to 649

> BO05871.pep
MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFY
RNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAA
LARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWH
YQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKS
YGYEVASFLDH

BO05871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL13A-PB 205 CG1475-PB 1..205 1..205 1058 100 Plus
RpL13A-PC 101 CG1475-PC 1..88 1..88 459 100 Plus