Clone Sequence Records
BO05872.3prime Sequence
809 bp (808 high quality bases) assembled on 2005-12-02
> BO05872.3prime
ATGGTCTAGAAAGCTTGCGACAAGCAGCACTGCATTGATAACACCATCGT
TTTCTGGATTGTTCGTGACCTGAGCGTATTTGCCCCAGACAACTTTTCCC
GTTTGCGTTACCAAACCCAGCTCAGAGATGTTGACTTCGATCACAGTACC
CTTTGTAATTACACCCAAGGAAGTGAACATGGGCGAGCTGGGGTTCTTCT
TGACGCCAATGATGGGCAGATTGAAGGTGGCTTTAAGCTCTGGATGCGTA
ACGTGAGCCTTTTTCATGCGCAGACCCATCGGTCGAATGAAACGCTCAAA
CTTTGGTGGCTTGCGTGTGAAGTTCTCGCCAACGAATGTGACTTTTGTGA
CCATGCGCTTCCATGCCTTTCGCTTTGTCTTTCCGGTCTTTAGTACTTTG
AAGACCTCAGCATCTGACTGAGCGCGTACTTTGGGAATGGGCACGTCCCA
CTTGCCTGCCTTCTCCTTGCGCTTCTGCTTGATCATATTGGACAGGACCT
TGGCGCTGGACTGGATGCCTCTGTCGAGCAGATAATGCGGCAGGGCTCCA
TCCTCGACCTTCTCCTCCTGCTTTTTGACCTTCTTCTCTTCGTGGGCCTG
GATCTTCTTCTTAATCTGAATCTTTTCATTGCGTCGCTCCTTATTAAAGA
GTTTGGCCTTGATGCCGCGCAACTTGCGAGCCTTTCGTGCTCGGTCTTTG
GGAAGACGCGCTTCCTTCTTGCGTTTCCGTTCCTCGTAATCCAATCGCCG
GCCATACAGCTTGCGATGGCGTTCCATATACTCATTCTGCGGCATGTCGA
CTGATAACT
BO05872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5277-PA | 780 | Ip259-RA | 1..777 | 795..19 | 3685 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 1136 | CG5277-RB | 299..1075 | 795..19 | 3765 | 99 | Minus |
| Ip259-RA | 907 | CG5277-RA | 64..840 | 795..19 | 3765 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10408767..10409543 | 795..19 | 3765 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:10:53 has no hits.
BO05872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:33 Download gff for
BO05872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-PA | 1..780 | 15..795 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:54 Download gff for
BO05872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5277-PA | 1..780 | 15..795 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:09 Download gff for
BO05872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..843 | 15..803 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:31 Download gff for
BO05872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..843 | 15..803 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:31 Download gff for
BO05872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10408758..10409546 | 15..803 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:09 Download gff for
BO05872.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10408758..10409546 | 15..803 | 98 | | Minus |
BO05872.5prime Sequence
809 bp (790 high quality bases) assembled on 2005-11-29
> BO05872.5prime
GAAGTTATCAGTCGACATGCCGCAGAATGAGTATATGGAACGCCATCGCA
AGCTGTATGGCCGGCGATTGGATTACGAGGAACGGAAACGCAAGAAGGAA
GCGCGTCTTCCCAAAGACCGAGCACGAAAGGCTCGCAAGTTGCGCGGCAT
CAAGGCCAAACTCTTTAATAAGGAGCGACGCAATGAAAAGATTCAGATTA
AGAAGAAGATCCAGGCCCACGAAGAGAAGAAGGTCAAAAAGCAGGAGGAG
AAGGTCGAGGATGGAGCCCTGCCGCATTATCTGCTCGACAGAGGCATCCA
GTCCAGCGCCAAGGTCCTGTCCAATATGATCAAGCAGAAGCGCAAGGAGA
AGGCAGGCAAGTGGGACGTGCCCATTCCCAAAGTACGCGCTCAGTCAGAT
GCTGAGGTCTTCAAAGTACTAAAGACCGGAAAGACAAAGCGAAAGGCATG
GAAGCGCATGGTCACAAAAGTCACATTCGTTGGCGAGAACTTCACACGCA
AGCCACCAAAGTTTGAGCGTTTCATTCGACCGATGGGTCTGCGCATGAAA
AAGGCTCACGTTACGCATCCAGAGCTTAAAGCCACCTTCAATCTGCCCAT
CATTGGCGTCAAGAAGAACCCCAGCTCGCCCATGTTCACTTCCTTGGGTG
TAATTACAAAGGGTACTGTGATCGAAGTCAACATCTCTGAGCTGGGTTTG
GTAACGCAAACGGGAAAAGTTGTCTGGGGCAAATACGCTCANGTCACGAA
CAATCCAGAAAACGATGGTGTTATCAATGCAGTGCTGCTTGTCGCAAGCT
TTCTAGACC
BO05872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5277-PA | 780 | Ip259-RA | 1..777 | 17..793 | 3666 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 1136 | CG5277-RB | 299..1075 | 17..793 | 3754 | 98.8 | Plus |
| Ip259-RA | 907 | CG5277-RA | 64..840 | 17..793 | 3754 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10408767..10409543 | 17..793 | 3754 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:45:08 has no hits.
BO05872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:34 Download gff for
BO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-PA | 1..780 | 17..797 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:59:56 Download gff for
BO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5277-PA | 1..780 | 17..797 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:31 Download gff for
BO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..843 | 9..797 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:24:23 Download gff for
BO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 55..843 | 9..797 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:24:23 Download gff for
BO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10408758..10409546 | 9..797 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:31 Download gff for
BO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10408758..10409546 | 9..797 | 98 | | Plus |
BO05872.complete Sequence
811 bp (811 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630180
> BO05872.complete
GAAGTTATCAGTCGACATGCCGCAGAATGAGTATATGGAACGCCATCGCA
AGCTGTATGGCCGGCGATTGGATTACGAGGAACGGAAACGCAAGAAGGAA
GCGCGTCTTCCCAAAGACCGAGCACGAAAGGCTCGCAAGTTGCGCGGCAT
CAAGGCCAAACTCTTTAATAAGGAGCGACGCAATGAAAAGATTCAGATTA
AGAAGAAGATCCAGGCCCACGAAGAGAAGAAGGTCAAAAAGCAGGAGGAG
AAGGTCGAGGATGGAGCCCTGCCGCATTATCTGCTCGACAGAGGCATCCA
GTCCAGCGCCAAGGTCCTGTCCAATATGATCAAGCAGAAGCGCAAGGAGA
AGGCAGGCAAGTGGGACGTGCCCATTCCCAAAGTACGCGCTCAGTCAGAT
GCTGAGGTCTTCAAAGTACTAAAGACCGGAAAGACAAAGCGAAAGGCATG
GAAGCGCATGGTCACAAAAGTCACATTCGTTGGCGAGAACTTCACACGCA
AGCCACCAAAGTTTGAGCGTTTCATTCGACCGATGGGTCTGCGCATGAAA
AAGGCTCACGTTACGCATCCAGAGCTTAAAGCCACCTTCAATCTGCCCAT
CATTGGCGTCAAGAAGAACCCCAGCTCGCCCATGTTCACTTCCTTGGGTG
TAATTACAAAGGGTACTGTGATCGAAGTCAACATCTCTGAGCTGGGTTTG
GTAACGCAAACGGGAAAAGTTGTCTGGGGCAAATACGCTCAGGTCACGAA
CAATCCAGAAAACGATGGTGTTATCAATGCAGTGCTGCTTGTCGCAAGCT
TTCTAGACCAT
BO05872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 780 | CG5277-PB | 1..777 | 17..793 | 3765 | 99 | Plus |
| Ip259-RA | 780 | CG5277-PA | 1..777 | 17..793 | 3765 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-RB | 1136 | CG5277-RB | 299..1075 | 17..793 | 3765 | 99 | Plus |
| Ip259-RA | 907 | CG5277-RA | 64..840 | 17..793 | 3765 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10408767..10409543 | 17..793 | 3765 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:18:37 has no hits.
BO05872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:14 Download gff for
BO05872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 1..780 | 17..797 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:31 Download gff for
BO05872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 54..842 | 9..797 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:42 Download gff for
BO05872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 64..840 | 17..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:14 Download gff for
BO05872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 54..842 | 9..797 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:09 Download gff for
BO05872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ip259-RA | 64..840 | 17..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:09 Download gff for
BO05872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10408767..10409543 | 17..795 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:42 Download gff for
BO05872.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10408767..10409543 | 17..795 | 98 | | Plus |
BO05872.pep Sequence
Translation from 16 to 811
> BO05872.pep
MPQNEYMERHRKLYGRRLDYEERKRKKEARLPKDRARKARKLRGIKAKLF
NKERRNEKIQIKKKIQAHEEKKVKKQEEKVEDGALPHYLLDRGIQSSAKV
LSNMIKQKRKEKAGKWDVPIPKVRAQSDAEVFKVLKTGKTKRKAWKRMVT
KVTFVGENFTRKPPKFERFIRPMGLRMKKAHVTHPELKATFNLPIIGVKK
NPSSPMFTSLGVITKGTVIEVNISELGLVTQTGKVVWGKYAQVTNNPEND
GVINAVLLVASFLDH
BO05872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ip259-PB | 259 | CG5277-PB | 1..259 | 1..259 | 1329 | 100 | Plus |
| Ip259-PA | 259 | CG5277-PA | 1..259 | 1..259 | 1329 | 100 | Plus |
