Clone Sequence Records
BO05874.3prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-02
> BO05874.3prime
ATGGTCTAGAAAGCTTGCTAGCTCCTCGTCCTCGTCGGGCAGTGCGGTCG
CCTGGGCCTCCTGCAAGTCACGCTCGATCTGCGCCTGCCAATCCTTATCC
ATCTTAACCTCGGGCGGCAGCAGGGCTGGCATGGCGACAAACTCCAGGTT
GGGATCACCAACCAGCTTGCGCGCCAGCCAAAGGAATGGTTTCTCGAAGT
TGTAGTTCGATTTGGCAGAAATATCGTAATACTGCAAGTTCTTCTTTCGG
TGGAAGACGATGCTCTTCGCTTTCACCTTGCGATCCTTGATATCGACTTT
GTTGCCACAGAGGACGATTGGTATGTTCTCGCAGACGCGGACTAGATCGC
GATGCCAGTTGGGCACGTTCTTGTACGTGACACGCGAGGTAACATCGAAC
ATGATGACGGCACACTGGCCCTGAATGTAGTAGCCATCGCGCAGCCCGCC
GAACTTCTCCTGGCCAGCGGTATCCCACACATTGAAACGGATGGCGCCAC
GATTGGTATGGAAGATCAATGGATGCACCTCCACGCCCAGTGTGGCCACG
TACTTCTTCTCGAACTCACCGGTCATGTGCCGCTTGACAAAGGTGGTCTT
GCCAGTGCCGCCATCGCCGACTAGCACGCACTTGAATGTGGGTATATCCT
GACCTTCCTGAGCCATGTCGACTGATAACT
BO05874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1404-PB | 651 | ran-RB | 1..648 | 666..19 | 3215 | 99.8 | Minus |
CG1404-PA | 651 | ran-RA | 1..648 | 666..19 | 3215 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 1263 | CG1404-RD | 283..930 | 666..19 | 3225 | 99.8 | Minus |
Ran-RC | 1581 | CG1404-RC | 134..781 | 666..19 | 3225 | 99.8 | Minus |
Ran-RA | 1667 | CG1404-RA | 220..867 | 666..19 | 3225 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11145943..11146377 | 232..666 | 2160 | 99.8 | Plus |
X | 23542271 | X | 11145652..11145867 | 19..234 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:03:08 has no hits.
BO05874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:37 Download gff for
BO05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:00 Download gff for
BO05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1404-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:29 Download gff for
BO05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RB | 141..802 | 7..673 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:06 Download gff for
BO05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RA | 214..875 | 7..673 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:06 Download gff for
BO05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11145644..11145864 | 7..231 | 97 | <- | Plus |
X | 11145943..11146380 | 232..673 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:29 Download gff for
BO05874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11039677..11039897 | 7..231 | 97 | <- | Plus |
arm_X | 11039976..11040413 | 232..673 | 98 | | Plus |
BO05874.5prime Sequence
680 bp (679 high quality bases) assembled on 2005-11-29
> BO05874.5prime
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTAGCAAGCTTTCTAGACC
BO05874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1404-PB | 651 | ran-RB | 1..648 | 17..664 | 3215 | 99.8 | Plus |
CG1404-PA | 651 | ran-RA | 1..648 | 17..664 | 3215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 1263 | CG1404-RD | 283..930 | 17..664 | 3225 | 99.8 | Plus |
Ran-RC | 1581 | CG1404-RC | 134..781 | 17..664 | 3225 | 99.8 | Plus |
Ran-RA | 1667 | CG1404-RA | 220..867 | 17..664 | 3225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11145943..11146377 | 451..17 | 2160 | 99.8 | Minus |
X | 23542271 | X | 11145652..11145867 | 664..449 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:24:06 has no hits.
BO05874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:38 Download gff for
BO05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:02 Download gff for
BO05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1404-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:25 Download gff for
BO05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RB | 141..802 | 10..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:29 Download gff for
BO05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RA | 214..875 | 10..676 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:29 Download gff for
BO05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11145644..11145864 | 452..676 | 97 | <- | Minus |
X | 11145943..11146380 | 10..451 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:25 Download gff for
BO05874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11039677..11039897 | 452..676 | 97 | <- | Minus |
arm_X | 11039976..11040413 | 10..451 | 98 | | Minus |
BO05874.complete Sequence
682 bp (682 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630181
> BO05874.complete
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTAGCAAGCTTTCTAGACCAT
BO05874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 651 | CG1404-PD | 1..648 | 17..664 | 3225 | 99.8 | Plus |
Ran-RC | 651 | CG1404-PC | 1..648 | 17..664 | 3225 | 99.8 | Plus |
Ran-RA | 651 | CG1404-PA | 1..648 | 17..664 | 3225 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-RD | 1263 | CG1404-RD | 283..930 | 17..664 | 3225 | 99.8 | Plus |
Ran-RC | 1581 | CG1404-RC | 134..781 | 17..664 | 3225 | 99.8 | Plus |
Ran-RA | 1667 | CG1404-RA | 220..867 | 17..664 | 3225 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11145943..11146377 | 451..17 | 2160 | 99.8 | Minus |
X | 23542271 | X | 11145652..11145867 | 664..449 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:34 has no hits.
BO05874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:16 Download gff for
BO05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-RA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:33 Download gff for
BO05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-RA | 196..857 | 10..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:09 Download gff for
BO05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RB | 147..794 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:16 Download gff for
BO05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ran-RA | 196..857 | 10..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:13 Download gff for
BO05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ran-RA | 220..867 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:13 Download gff for
BO05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11145650..11145864 | 452..666 | 99 | <- | Minus |
X | 11145943..11146377 | 17..451 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:09 Download gff for
BO05874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11039683..11039897 | 452..666 | 99 | <- | Minus |
arm_X | 11039976..11040410 | 17..451 | 99 | | Minus |
BO05874.pep Sequence
Translation from 16 to 682
> BO05874.pep
MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPL
IFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKN
VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS
AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERD
LQEAQATALPDEDEELASFLDH
BO05874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ran-PD | 216 | CG1404-PD | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-PC | 216 | CG1404-PC | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-PA | 216 | CG1404-PA | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-PB | 216 | CG1404-PB | 1..216 | 1..216 | 1155 | 100 | Plus |
Ran-like-PA | 217 | CG7815-PA | 11..210 | 11..210 | 675 | 61.5 | Plus |