Clone BO05874 Report

Search the DGRC for BO05874

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptran-RA
Protein status:BO05874.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO05874.3prime Sequence

680 bp (679 high quality bases) assembled on 2005-12-02

> BO05874.3prime
ATGGTCTAGAAAGCTTGCTAGCTCCTCGTCCTCGTCGGGCAGTGCGGTCG
CCTGGGCCTCCTGCAAGTCACGCTCGATCTGCGCCTGCCAATCCTTATCC
ATCTTAACCTCGGGCGGCAGCAGGGCTGGCATGGCGACAAACTCCAGGTT
GGGATCACCAACCAGCTTGCGCGCCAGCCAAAGGAATGGTTTCTCGAAGT
TGTAGTTCGATTTGGCAGAAATATCGTAATACTGCAAGTTCTTCTTTCGG
TGGAAGACGATGCTCTTCGCTTTCACCTTGCGATCCTTGATATCGACTTT
GTTGCCACAGAGGACGATTGGTATGTTCTCGCAGACGCGGACTAGATCGC
GATGCCAGTTGGGCACGTTCTTGTACGTGACACGCGAGGTAACATCGAAC
ATGATGACGGCACACTGGCCCTGAATGTAGTAGCCATCGCGCAGCCCGCC
GAACTTCTCCTGGCCAGCGGTATCCCACACATTGAAACGGATGGCGCCAC
GATTGGTATGGAAGATCAATGGATGCACCTCCACGCCCAGTGTGGCCACG
TACTTCTTCTCGAACTCACCGGTCATGTGCCGCTTGACAAAGGTGGTCTT
GCCAGTGCCGCCATCGCCGACTAGCACGCACTTGAATGTGGGTATATCCT
GACCTTCCTGAGCCATGTCGACTGATAACT

BO05874.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1404-PB 651 ran-RB 1..648 666..19 3215 99.8 Minus
CG1404-PA 651 ran-RA 1..648 666..19 3215 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 1263 CG1404-RD 283..930 666..19 3225 99.8 Minus
Ran-RC 1581 CG1404-RC 134..781 666..19 3225 99.8 Minus
Ran-RA 1667 CG1404-RA 220..867 666..19 3225 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11145943..11146377 232..666 2160 99.8 Plus
X 23542271 X 11145652..11145867 19..234 1080 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:03:08 has no hits.

BO05874.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:37 Download gff for BO05874.3prime
Subject Subject Range Query Range Percent Splice Strand
ran-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:00 Download gff for BO05874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1404-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:29 Download gff for BO05874.3prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 141..802 7..673 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:06 Download gff for BO05874.3prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RA 214..875 7..673 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:06 Download gff for BO05874.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11145644..11145864 7..231 97 <- Plus
X 11145943..11146380 232..673 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:29 Download gff for BO05874.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11039677..11039897 7..231 97 <- Plus
arm_X 11039976..11040413 232..673 98   Plus

BO05874.5prime Sequence

680 bp (679 high quality bases) assembled on 2005-11-29

> BO05874.5prime
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTAGCAAGCTTTCTAGACC

BO05874.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1404-PB 651 ran-RB 1..648 17..664 3215 99.8 Plus
CG1404-PA 651 ran-RA 1..648 17..664 3215 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 1263 CG1404-RD 283..930 17..664 3225 99.8 Plus
Ran-RC 1581 CG1404-RC 134..781 17..664 3225 99.8 Plus
Ran-RA 1667 CG1404-RA 220..867 17..664 3225 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11145943..11146377 451..17 2160 99.8 Minus
X 23542271 X 11145652..11145867 664..449 1080 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:24:06 has no hits.

BO05874.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:38 Download gff for BO05874.5prime
Subject Subject Range Query Range Percent Splice Strand
ran-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:02 Download gff for BO05874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1404-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:25 Download gff for BO05874.5prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 141..802 10..676 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:29 Download gff for BO05874.5prime
Subject Subject Range Query Range Percent Splice Strand
Ran-RA 214..875 10..676 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:29 Download gff for BO05874.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11145644..11145864 452..676 97 <- Minus
X 11145943..11146380 10..451 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:25 Download gff for BO05874.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11039677..11039897 452..676 97 <- Minus
arm_X 11039976..11040413 10..451 98   Minus

BO05874.complete Sequence

682 bp (682 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630181

> BO05874.complete
GAAGTTATCAGTCGACATGGCTCAGGAAGGTCAGGATATACCCACATTCA
AGTGCGTGCTAGTCGGCGATGGCGGCACTGGCAAGACCACCTTTGTCAAG
CGGCACATGACCGGTGAGTTCGAGAAGAAGTACGTGGCCACACTGGGCGT
GGAGGTGCATCCATTGATCTTCCATACCAATCGTGGCGCCATCCGTTTCA
ATGTGTGGGATACCGCTGGCCAGGAGAAGTTCGGCGGGCTGCGCGATGGC
TACTACATTCAGGGCCAGTGTGCCGTCATCATGTTCGATGTTACCTCGCG
TGTCACGTACAAGAACGTGCCCAACTGGCATCGCGATCTAGTCCGCGTCT
GCGAGAACATACCAATCGTCCTCTGTGGCAACAAAGTCGATATCAAGGAT
CGCAAGGTGAAAGCGAAGAGCATCGTCTTCCACCGAAAGAAGAACTTGCA
GTATTACGATATTTCTGCCAAATCGAACTACAACTTCGAGAAACCATTCC
TTTGGCTGGCGCGCAAGCTGGTTGGTGATCCCAACCTGGAGTTTGTCGCC
ATGCCAGCCCTGCTGCCGCCCGAGGTTAAGATGGATAAGGATTGGCAGGC
GCAGATCGAGCGTGACTTGCAGGAGGCCCAGGCGACCGCACTGCCCGACG
AGGACGAGGAGCTAGCAAGCTTTCTAGACCAT

BO05874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 651 CG1404-PD 1..648 17..664 3225 99.8 Plus
Ran-RC 651 CG1404-PC 1..648 17..664 3225 99.8 Plus
Ran-RA 651 CG1404-PA 1..648 17..664 3225 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-RD 1263 CG1404-RD 283..930 17..664 3225 99.8 Plus
Ran-RC 1581 CG1404-RC 134..781 17..664 3225 99.8 Plus
Ran-RA 1667 CG1404-RA 220..867 17..664 3225 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11145943..11146377 451..17 2160 99.8 Minus
X 23542271 X 11145652..11145867 664..449 1080 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:34 has no hits.

BO05874.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:16 Download gff for BO05874.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:33 Download gff for BO05874.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 196..857 10..676 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:09 Download gff for BO05874.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RB 147..794 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:16 Download gff for BO05874.complete
Subject Subject Range Query Range Percent Splice Strand
ran-RA 196..857 10..676 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:13 Download gff for BO05874.complete
Subject Subject Range Query Range Percent Splice Strand
Ran-RA 220..867 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:13 Download gff for BO05874.complete
Subject Subject Range Query Range Percent Splice Strand
X 11145650..11145864 452..666 99 <- Minus
X 11145943..11146377 17..451 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:09 Download gff for BO05874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11039683..11039897 452..666 99 <- Minus
arm_X 11039976..11040410 17..451 99   Minus

BO05874.pep Sequence

Translation from 16 to 682

> BO05874.pep
MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPL
IFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKN
VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS
AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERD
LQEAQATALPDEDEELASFLDH

BO05874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ran-PD 216 CG1404-PD 1..216 1..216 1155 100 Plus
Ran-PC 216 CG1404-PC 1..216 1..216 1155 100 Plus
Ran-PA 216 CG1404-PA 1..216 1..216 1155 100 Plus
Ran-PB 216 CG1404-PB 1..216 1..216 1155 100 Plus
Ran-like-PA 217 CG7815-PA 11..210 11..210 675 61.5 Plus