Clone BO05876 Report

Search the DGRC for BO05876

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG4769-RA
Protein status:BO05876.pep: validated full length
Sequenced Size:955

Clone Sequence Records

BO05876.3prime Sequence

800 bp (769 high quality bases) assembled on 2005-12-02

> BO05876.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCTTGGGCACGAACACAATCTTCCGCG
ACTTGAGCGACGACCACTTGTGCCGCTTAATGTAATACGAGATGACGGTC
AGGAAGCCAAGGATGCCAATCACCTTGATCAGCAGCTGCTTGCGATCGTC
GTGCTCCGGCTCGGAAGTCCACTTCAGGAAAGTGGCCACGTCCTTGGCCA
GCTGGCTCTGCGTCGGCGGTGTGCCGTCCTCGTACTCGATGACCTCGTTG
TACAACACCTGGGCCATGGAAATGGCACCGCCCGGGAAGTACGGGTTGAA
GTACTGACCCTCGCGCAGCACCACTCCGGCAGGAGCATCATGGTAGCCCG
TGAGCAGCGAGAAGATGTAATCCTCTCCGCCCTTGCGGGCCGACACGATG
TAGCTCAGATCCGGAGGATAAGCACCGTTGTTGGCAGCACGGGCCGCTTC
CTCGTTGGGATACGGCGATGGGAAGTAGTCCGACAGCTTGCCAGGACGAG
TGTAGTAGTTGCCGGTGTCATCGGGACCGTCCTTGACCGTGATCTGCTCG
GCTTCAGCCTTGGCCTCGGCTTCGGTGTGGGTGACACCAACCAGATTGCG
GTAGGCAATGTATTGCATCGAGTGGCAGGCGGAGCACACCTGCTTGTACA
CCTCGTAGCCGCGACGAACGCTCTGGTGGTCCAAAGCGTCGAAGAGGCCC
TTGTGGTTCCAGAGTTGCGCGGGGGAGTGCACCTCGCCGCCAGATGCCTG
CACGGACTGCTCCAGGGCGTAGATAAGGGCGCCCACTCCGCCGGTGATTG

BO05876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-PA 924 CG4769-RA 140..921 800..19 3785 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 1145 CG4769-RB 269..1050 800..19 3835 99.4 Minus
CG4769-RA 1521 CG4769-RA 269..1050 800..19 3835 99.4 Minus
CG14508-RA 1293 CG14508-RA 454..924 712..242 675 76.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5361694..5361990 538..242 1425 98.7 Minus
3L 28110227 3L 5362101..5362327 245..19 1135 100 Minus
3L 28110227 3L 5361491..5361627 672..536 670 99.3 Minus
3R 32079331 3R 29203044..29203499 257..712 660 76.3 Plus
3L 28110227 3L 5360896..5361025 800..671 650 100 Minus
Blast to na_te.dros performed 2015-02-10 18:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4206..4248 790..748 107 72.1 Minus

BO05876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:41 Download gff for BO05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 140..924 18..800 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:05 Download gff for BO05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 140..924 18..800 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:14 Download gff for BO05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 269..1050 19..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:06 Download gff for BO05876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 269..1050 19..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:06 Download gff for BO05876.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5360896..5361025 671..800 100 -> Minus
3L 5361493..5361625 538..670 99 -> Minus
3L 5361695..5361988 244..537 98 -> Minus
3L 5362103..5362327 19..243 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:14 Download gff for BO05876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5354593..5354725 538..670 99 -> Minus
arm_3L 5353996..5354125 671..800 100 -> Minus
arm_3L 5354795..5355088 244..537 98 -> Minus
arm_3L 5355203..5355427 19..243 100   Minus

BO05876.5prime Sequence

908 bp (784 high quality bases) assembled on 2005-11-29

> BO05876.5prime
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGNACTCCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAGCGGCACAAGTGGTCGTCGCT
CAAGTCGC

BO05876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-PA 924 CG4769-RA 1..892 17..908 4266 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 1145 CG4769-RB 129..1021 16..908 4349 99.1 Plus
CG4769-RA 1521 CG4769-RA 129..1021 16..908 4349 99.1 Plus
CG14508-RA 1293 CG14508-RA 454..924 244..714 675 76.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5361694..5361990 418..714 1425 98.7 Plus
3L 28110227 3L 5362101..5362298 711..908 964 99 Plus
3L 28110227 3L 5360875..5361025 135..285 755 100 Plus
3L 28110227 3L 5361491..5361627 284..420 670 99.3 Plus
3R 32079331 3R 29203044..29203499 699..244 660 76.3 Minus
3L 28110227 3L 5360339..5360412 16..89 370 100 Plus
3L 28110227 3L 5360688..5360739 85..136 245 98.1 Plus
Blast to na_te.dros performed 2015-02-11 22:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4184..4248 139..208 114 65.7 Plus

BO05876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:42 Download gff for BO05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:06 Download gff for BO05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:02 Download gff for BO05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 120..1021 8..908 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:14 Download gff for BO05876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 120..1021 8..908 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:14 Download gff for BO05876.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5361493..5361625 286..418 99 -> Plus
3L 5360692..5360739 89..136 97 -> Plus
3L 5360877..5361025 137..285 100 -> Plus
3L 5361695..5361988 419..712 98 -> Plus
3L 5362103..5362298 713..908 98   Plus
3L 5360330..5360411 8..88 95 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:02 Download gff for BO05876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5353430..5353511 8..88 95 -> Plus
arm_3L 5353792..5353839 89..136 97 -> Plus
arm_3L 5353977..5354125 137..285 100 -> Plus
arm_3L 5354593..5354725 286..418 99 -> Plus
arm_3L 5354795..5355088 419..712 98 -> Plus
arm_3L 5355203..5355398 713..908 98   Plus

BO05876.complete Sequence

955 bp (955 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630182

> BO05876.complete
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGGACTTCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAGCGGCACAAGTGGTCGTCGCT
CAAGTCGCGGAAGATTGTGTTCGTGCCCAAGGAGAAGGCAAGCTTTCTAG
ACCAT

BO05876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 924 CG4769-PB 1..921 17..937 4515 99.3 Plus
CG4769-RA 924 CG4769-PA 1..921 17..937 4515 99.3 Plus
CG14508-RA 1035 CG14508-PA 237..692 244..699 660 76.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-RB 1145 CG4769-RB 129..1050 16..937 4520 99.3 Plus
CG4769-RA 1521 CG4769-RA 129..1050 16..937 4520 99.3 Plus
CG14508-RA 1293 CG14508-RA 454..909 244..699 660 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5361694..5361990 418..714 1425 98.7 Plus
3L 28110227 3L 5362101..5362327 711..937 1135 100 Plus
3L 28110227 3L 5360875..5361025 135..285 755 100 Plus
3L 28110227 3L 5361491..5361627 284..420 670 99.3 Plus
3R 32079331 3R 29203044..29203499 699..244 660 76.3 Minus
3L 28110227 3L 5360339..5360412 16..89 370 100 Plus
3L 28110227 3L 5360688..5360739 85..136 245 98.1 Plus
Blast to na_te.dros performed 2014-11-28 00:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4184..4248 139..208 114 65.7 Plus

BO05876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:59 Download gff for BO05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 1..924 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:10 Download gff for BO05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 141..1071 8..937 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:03 Download gff for BO05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 130..1050 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:00 Download gff for BO05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 141..1071 8..937 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:03 Download gff for BO05876.complete
Subject Subject Range Query Range Percent Splice Strand
CG4769-RA 130..1050 17..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:03 Download gff for BO05876.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5360340..5360411 17..88 100 -> Plus
3L 5360692..5360739 89..136 97 -> Plus
3L 5360877..5361025 137..285 100 -> Plus
3L 5361493..5361625 286..418 99 -> Plus
3L 5361695..5361988 419..712 98 -> Plus
3L 5362103..5362327 713..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:03 Download gff for BO05876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5353440..5353511 17..88 100 -> Plus
arm_3L 5353792..5353839 89..136 97 -> Plus
arm_3L 5353977..5354125 137..285 100 -> Plus
arm_3L 5354593..5354725 286..418 99 -> Plus
arm_3L 5354795..5355088 419..712 98 -> Plus
arm_3L 5355203..5355427 713..939 99   Plus

BO05876.pep Sequence

Translation from 16 to 955

> BO05876.pep
MAATLRRFHGLRLLKSAPALSLQQAKNLSSAGSWASGNKKLIGALGAITG
GVGALIYALEQSVQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQ
VCSACHSMQYIAYRNLVGVTHTEAEAKAEAEQITVKDGPDDTGNYYTRPG
KLSDYFPSPYPNEEAARAANNGAYPPDLSYIVSARKGGEDYIFSLLTGYH
DAPAGVVLREGQYFNPYFPGGAISMAQVLYNEVIEYEDGTPPTQSQLAKD
VATFLKWTSEPEHDDRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKI
VFVPKEKASFLDH

BO05876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4769-PB 307 CG4769-PB 1..307 1..307 1605 100 Plus
CG4769-PA 307 CG4769-PA 1..307 1..307 1605 100 Plus
CG14508-PA 344 CG14508-PA 35..312 32..308 1012 70.1 Plus