Clone Sequence Records
BO05876.3prime Sequence
800 bp (769 high quality bases) assembled on 2005-12-02
> BO05876.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCTTGGGCACGAACACAATCTTCCGCG
ACTTGAGCGACGACCACTTGTGCCGCTTAATGTAATACGAGATGACGGTC
AGGAAGCCAAGGATGCCAATCACCTTGATCAGCAGCTGCTTGCGATCGTC
GTGCTCCGGCTCGGAAGTCCACTTCAGGAAAGTGGCCACGTCCTTGGCCA
GCTGGCTCTGCGTCGGCGGTGTGCCGTCCTCGTACTCGATGACCTCGTTG
TACAACACCTGGGCCATGGAAATGGCACCGCCCGGGAAGTACGGGTTGAA
GTACTGACCCTCGCGCAGCACCACTCCGGCAGGAGCATCATGGTAGCCCG
TGAGCAGCGAGAAGATGTAATCCTCTCCGCCCTTGCGGGCCGACACGATG
TAGCTCAGATCCGGAGGATAAGCACCGTTGTTGGCAGCACGGGCCGCTTC
CTCGTTGGGATACGGCGATGGGAAGTAGTCCGACAGCTTGCCAGGACGAG
TGTAGTAGTTGCCGGTGTCATCGGGACCGTCCTTGACCGTGATCTGCTCG
GCTTCAGCCTTGGCCTCGGCTTCGGTGTGGGTGACACCAACCAGATTGCG
GTAGGCAATGTATTGCATCGAGTGGCAGGCGGAGCACACCTGCTTGTACA
CCTCGTAGCCGCGACGAACGCTCTGGTGGTCCAAAGCGTCGAAGAGGCCC
TTGTGGTTCCAGAGTTGCGCGGGGGAGTGCACCTCGCCGCCAGATGCCTG
CACGGACTGCTCCAGGGCGTAGATAAGGGCGCCCACTCCGCCGGTGATTG
BO05876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-PA | 924 | CG4769-RA | 140..921 | 800..19 | 3785 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 1145 | CG4769-RB | 269..1050 | 800..19 | 3835 | 99.4 | Minus |
CG4769-RA | 1521 | CG4769-RA | 269..1050 | 800..19 | 3835 | 99.4 | Minus |
CG14508-RA | 1293 | CG14508-RA | 454..924 | 712..242 | 675 | 76.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5361694..5361990 | 538..242 | 1425 | 98.7 | Minus |
3L | 28110227 | 3L | 5362101..5362327 | 245..19 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 5361491..5361627 | 672..536 | 670 | 99.3 | Minus |
3R | 32079331 | 3R | 29203044..29203499 | 257..712 | 660 | 76.3 | Plus |
3L | 28110227 | 3L | 5360896..5361025 | 800..671 | 650 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 18:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4206..4248 | 790..748 | 107 | 72.1 | Minus |
BO05876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:41 Download gff for
BO05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 140..924 | 18..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:05 Download gff for
BO05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 140..924 | 18..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:14 Download gff for
BO05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 269..1050 | 19..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:06 Download gff for
BO05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 269..1050 | 19..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:06 Download gff for
BO05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5360896..5361025 | 671..800 | 100 | -> | Minus |
3L | 5361493..5361625 | 538..670 | 99 | -> | Minus |
3L | 5361695..5361988 | 244..537 | 98 | -> | Minus |
3L | 5362103..5362327 | 19..243 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:14 Download gff for
BO05876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5354593..5354725 | 538..670 | 99 | -> | Minus |
arm_3L | 5353996..5354125 | 671..800 | 100 | -> | Minus |
arm_3L | 5354795..5355088 | 244..537 | 98 | -> | Minus |
arm_3L | 5355203..5355427 | 19..243 | 100 | | Minus |
BO05876.5prime Sequence
908 bp (784 high quality bases) assembled on 2005-11-29
> BO05876.5prime
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGNACTCCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAGCGGCACAAGTGGTCGTCGCT
CAAGTCGC
BO05876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-PA | 924 | CG4769-RA | 1..892 | 17..908 | 4266 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 1145 | CG4769-RB | 129..1021 | 16..908 | 4349 | 99.1 | Plus |
CG4769-RA | 1521 | CG4769-RA | 129..1021 | 16..908 | 4349 | 99.1 | Plus |
CG14508-RA | 1293 | CG14508-RA | 454..924 | 244..714 | 675 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5361694..5361990 | 418..714 | 1425 | 98.7 | Plus |
3L | 28110227 | 3L | 5362101..5362298 | 711..908 | 964 | 99 | Plus |
3L | 28110227 | 3L | 5360875..5361025 | 135..285 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5361491..5361627 | 284..420 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 29203044..29203499 | 699..244 | 660 | 76.3 | Minus |
3L | 28110227 | 3L | 5360339..5360412 | 16..89 | 370 | 100 | Plus |
3L | 28110227 | 3L | 5360688..5360739 | 85..136 | 245 | 98.1 | Plus |
Blast to na_te.dros performed 2015-02-11 22:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4184..4248 | 139..208 | 114 | 65.7 | Plus |
BO05876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:42 Download gff for
BO05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:06 Download gff for
BO05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:02 Download gff for
BO05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 120..1021 | 8..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:14 Download gff for
BO05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 120..1021 | 8..908 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:14 Download gff for
BO05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5361493..5361625 | 286..418 | 99 | -> | Plus |
3L | 5360692..5360739 | 89..136 | 97 | -> | Plus |
3L | 5360877..5361025 | 137..285 | 100 | -> | Plus |
3L | 5361695..5361988 | 419..712 | 98 | -> | Plus |
3L | 5362103..5362298 | 713..908 | 98 | | Plus |
3L | 5360330..5360411 | 8..88 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:02 Download gff for
BO05876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5353430..5353511 | 8..88 | 95 | -> | Plus |
arm_3L | 5353792..5353839 | 89..136 | 97 | -> | Plus |
arm_3L | 5353977..5354125 | 137..285 | 100 | -> | Plus |
arm_3L | 5354593..5354725 | 286..418 | 99 | -> | Plus |
arm_3L | 5354795..5355088 | 419..712 | 98 | -> | Plus |
arm_3L | 5355203..5355398 | 713..908 | 98 | | Plus |
BO05876.complete Sequence
955 bp (955 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630182
> BO05876.complete
GAAGTTATCAGTCGACATGGCAGCGACATTGCGAAGATTCCATGGCTTGA
GATTGCTGAAATCCGCGCCAGCACTCAGCCTGCAGCAGGCGAAGAACCTC
TCTTCCGCCGGCAGCTGGGCCAGTGGCAACAAGAAGCTGATCGGCGCCTT
GGGAGCAATCACCGGCGGAGTGGGCGCCCTTATCTACGCCCTGGAGCAGT
CCGTGCAGGCATCTGGCGGCGAGGTGCACTCCCCCGCGCAACTCTGGAAC
CACAAGGGCCTCTTCGACGCTTTGGACCACCAGAGCGTTCGTCGCGGCTA
CGAGGTGTACAAGCAGGTGTGCTCCGCCTGCCACTCGATGCAATACATTG
CCTACCGCAATCTGGTTGGTGTCACCCACACCGAAGCCGAGGCCAAGGCT
GAAGCCGAGCAGATCACGGTCAAGGACGGTCCCGATGACACCGGCAACTA
CTACACTCGTCCTGGCAAGCTGTCGGACTACTTCCCATCGCCGTATCCCA
ACGAGGAAGCGGCCCGTGCTGCCAACAACGGTGCTTATCCTCCGGATCTG
AGCTACATCGTGTCGGCCCGCAAGGGCGGAGAGGATTACATCTTCTCGCT
GCTCACGGGCTACCATGATGCTCCTGCCGGAGTGGTGCTGCGCGAGGGTC
AGTACTTCAACCCGTACTTCCCGGGCGGTGCCATTTCCATGGCCCAGGTG
TTGTACAACGAGGTCATCGAGTACGAGGACGGCACACCGCCGACGCAGAG
CCAGCTGGCCAAGGACGTGGCCACTTTCCTGAAGTGGACTTCCGAGCCGG
AGCACGACGATCGCAAGCAGCTGCTGATCAAGGTGATTGGCATCCTTGGC
TTCCTGACCGTCATCTCGTATTACATTAAGCGGCACAAGTGGTCGTCGCT
CAAGTCGCGGAAGATTGTGTTCGTGCCCAAGGAGAAGGCAAGCTTTCTAG
ACCAT
BO05876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 924 | CG4769-PB | 1..921 | 17..937 | 4515 | 99.3 | Plus |
CG4769-RA | 924 | CG4769-PA | 1..921 | 17..937 | 4515 | 99.3 | Plus |
CG14508-RA | 1035 | CG14508-PA | 237..692 | 244..699 | 660 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-RB | 1145 | CG4769-RB | 129..1050 | 16..937 | 4520 | 99.3 | Plus |
CG4769-RA | 1521 | CG4769-RA | 129..1050 | 16..937 | 4520 | 99.3 | Plus |
CG14508-RA | 1293 | CG14508-RA | 454..909 | 244..699 | 660 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5361694..5361990 | 418..714 | 1425 | 98.7 | Plus |
3L | 28110227 | 3L | 5362101..5362327 | 711..937 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 5360875..5361025 | 135..285 | 755 | 100 | Plus |
3L | 28110227 | 3L | 5361491..5361627 | 284..420 | 670 | 99.3 | Plus |
3R | 32079331 | 3R | 29203044..29203499 | 699..244 | 660 | 76.3 | Minus |
3L | 28110227 | 3L | 5360339..5360412 | 16..89 | 370 | 100 | Plus |
3L | 28110227 | 3L | 5360688..5360739 | 85..136 | 245 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 00:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4184..4248 | 139..208 | 114 | 65.7 | Plus |
BO05876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:59 Download gff for
BO05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 1..924 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:10 Download gff for
BO05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 141..1071 | 8..937 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:03 Download gff for
BO05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 130..1050 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:00 Download gff for
BO05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 141..1071 | 8..937 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:03 Download gff for
BO05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4769-RA | 130..1050 | 17..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:03 Download gff for
BO05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5360340..5360411 | 17..88 | 100 | -> | Plus |
3L | 5360692..5360739 | 89..136 | 97 | -> | Plus |
3L | 5360877..5361025 | 137..285 | 100 | -> | Plus |
3L | 5361493..5361625 | 286..418 | 99 | -> | Plus |
3L | 5361695..5361988 | 419..712 | 98 | -> | Plus |
3L | 5362103..5362327 | 713..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:03 Download gff for
BO05876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5353440..5353511 | 17..88 | 100 | -> | Plus |
arm_3L | 5353792..5353839 | 89..136 | 97 | -> | Plus |
arm_3L | 5353977..5354125 | 137..285 | 100 | -> | Plus |
arm_3L | 5354593..5354725 | 286..418 | 99 | -> | Plus |
arm_3L | 5354795..5355088 | 419..712 | 98 | -> | Plus |
arm_3L | 5355203..5355427 | 713..939 | 99 | | Plus |
BO05876.pep Sequence
Translation from 16 to 955
> BO05876.pep
MAATLRRFHGLRLLKSAPALSLQQAKNLSSAGSWASGNKKLIGALGAITG
GVGALIYALEQSVQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQ
VCSACHSMQYIAYRNLVGVTHTEAEAKAEAEQITVKDGPDDTGNYYTRPG
KLSDYFPSPYPNEEAARAANNGAYPPDLSYIVSARKGGEDYIFSLLTGYH
DAPAGVVLREGQYFNPYFPGGAISMAQVLYNEVIEYEDGTPPTQSQLAKD
VATFLKWTSEPEHDDRKQLLIKVIGILGFLTVISYYIKRHKWSSLKSRKI
VFVPKEKASFLDH
BO05876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4769-PB | 307 | CG4769-PB | 1..307 | 1..307 | 1605 | 100 | Plus |
CG4769-PA | 307 | CG4769-PA | 1..307 | 1..307 | 1605 | 100 | Plus |
CG14508-PA | 344 | CG14508-PA | 35..312 | 32..308 | 1012 | 70.1 | Plus |