Clone Sequence Records
BO05877.3prime Sequence
665 bp (664 high quality bases) assembled on 2005-12-02
> BO05877.3prime
ATGGTCTAGAAAGCTTGCTTGGATGGCTCTGCCGACTCCATCGAAAGCCT
TTTCCTTGTGATCCGCTGCATTGGCACGGGATTCGTAGTTGCATATGGTT
ACGCCATGGTAATGAGCTTCTGTGAACTCTCCTCGAAGACCTATATAGTA
AATGCGTGTTATGTCTTCGCCAAAATTGCTGGGAAAGTAGAGGGAGAGAT
GGTGCACGGAGGAGAAGGTGACCACTTTGGGTGAGTACTCGATTTCTCCG
CGGGCATCGCGGGTCAGCTGGAACTCCTGGTCGGGCTTTGCTCTGGCATC
ATCAAAGGTCATCCTGGGTCGGTTCTTGAAGATTTTGACCATGTTTGGAT
GGGAGTCATCATTGGCCCCACTTATGATGATGCCCTTGAGCTTGATGTTG
CCGGTGAAGGGAATGTTGAAGAGGAGCTCTTCATCCGCATCGCTCTCCAC
GTACTTGGACAGATCCTGGCGCTTCTCGTACGGCTTAAAGACACTTTTTC
CCTGGCCATCCGTCTCCTCGTTCAGGCACTCCACATTGTCCAGATCGATT
TTGGTGTACAAGCTGTACTCGATGCCCATTTCTAGGGCGTGGTCCACGTC
CGAGGCCTCGTGGCTGCAGCCGCCGTGATCGTGAGAGTGTCCGTGCGGCA
TGTCGACTGATAACT
BO05877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-PA | 636 | CG6153-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 821 | CG6153-RC | 91..723 | 651..19 | 3165 | 100 | Minus |
CG6153-RA | 774 | CG6153-RA | 91..723 | 651..19 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12693083..12693402 | 651..332 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 12693466..12693658 | 331..139 | 965 | 100 | Minus |
2L | 23513712 | 2L | 12693718..12693841 | 142..19 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:03:25 has no hits.
BO05877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:43 Download gff for
BO05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 18..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:08 Download gff for
BO05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 18..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:31 Download gff for
BO05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 11..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:11 Download gff for
BO05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 11..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:11 Download gff for
BO05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12693466..12693656 | 141..331 | 100 | -> | Minus |
2L | 12693720..12693848 | 11..140 | 96 | | Minus |
2L | 12693083..12693402 | 332..651 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:31 Download gff for
BO05877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12693083..12693402 | 332..651 | 100 | -> | Minus |
arm_2L | 12693466..12693656 | 141..331 | 100 | -> | Minus |
arm_2L | 12693720..12693848 | 11..140 | 96 | | Minus |
BO05877.5prime Sequence
665 bp (664 high quality bases) assembled on 2005-11-29
> BO05877.5prime
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAG
CAAGCTTTCTAGACC
BO05877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-PA | 636 | CG6153-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 821 | CG6153-RC | 91..723 | 17..649 | 3165 | 100 | Plus |
CG6153-RA | 774 | CG6153-RA | 91..723 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12693083..12693402 | 17..336 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 12693466..12693658 | 337..529 | 965 | 100 | Plus |
2L | 23513712 | 2L | 12693718..12693841 | 526..649 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:25:12 has no hits.
BO05877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:44 Download gff for
BO05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:09 Download gff for
BO05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-PA | 1..636 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:11 Download gff for
BO05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:06 Download gff for
BO05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..730 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:06 Download gff for
BO05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
2L | 12693720..12693848 | 528..657 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:11 Download gff for
BO05877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
arm_2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
arm_2L | 12693720..12693848 | 528..657 | 96 | | Plus |
BO05877.complete Sequence
667 bp (667 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630183
> BO05877.complete
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAG
CAAGCTTTCTAGACCAT
BO05877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 636 | CG6153-PC | 1..633 | 17..649 | 3165 | 100 | Plus |
CG6153-RA | 636 | CG6153-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-RC | 821 | CG6153-RC | 91..723 | 17..649 | 3165 | 100 | Plus |
CG6153-RA | 774 | CG6153-RA | 91..723 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12693083..12693402 | 17..336 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 12693466..12693658 | 337..529 | 965 | 100 | Plus |
2L | 23513712 | 2L | 12693718..12693841 | 526..649 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:28:54 has no hits.
BO05877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:01 Download gff for
BO05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 1..636 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:12 Download gff for
BO05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 98..737 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:03 Download gff for
BO05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..723 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:01 Download gff for
BO05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 61..700 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:22 Download gff for
BO05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6153-RA | 91..723 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:22 Download gff for
BO05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
2L | 12693720..12693841 | 528..651 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:03 Download gff for
BO05877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12693083..12693402 | 17..336 | 100 | -> | Plus |
arm_2L | 12693466..12693656 | 337..527 | 100 | -> | Plus |
arm_2L | 12693720..12693841 | 528..651 | 98 | | Plus |
BO05877.pep Sequence
Translation from 16 to 667
> BO05877.pep
MPHGHSHDHGGCSHEASDVDHALEMGIEYSLYTKIDLDNVECLNEETDGQ
GKSVFKPYEKRQDLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDS
HPNMVKIFKNRPRMTFDDARAKPDQEFQLTRDARGEIEYSPKVVTFSSVH
HLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKE
KAFDGVGRAIQASFLDH
BO05877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6153-PC | 211 | CG6153-PC | 1..211 | 1..211 | 1130 | 100 | Plus |
CG6153-PA | 211 | CG6153-PA | 1..211 | 1..211 | 1130 | 100 | Plus |