Clone BO05877 Report

Search the DGRC for BO05877

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG6153-RA
Protein status:BO05877.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO05877.3prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-02

> BO05877.3prime
ATGGTCTAGAAAGCTTGCTTGGATGGCTCTGCCGACTCCATCGAAAGCCT
TTTCCTTGTGATCCGCTGCATTGGCACGGGATTCGTAGTTGCATATGGTT
ACGCCATGGTAATGAGCTTCTGTGAACTCTCCTCGAAGACCTATATAGTA
AATGCGTGTTATGTCTTCGCCAAAATTGCTGGGAAAGTAGAGGGAGAGAT
GGTGCACGGAGGAGAAGGTGACCACTTTGGGTGAGTACTCGATTTCTCCG
CGGGCATCGCGGGTCAGCTGGAACTCCTGGTCGGGCTTTGCTCTGGCATC
ATCAAAGGTCATCCTGGGTCGGTTCTTGAAGATTTTGACCATGTTTGGAT
GGGAGTCATCATTGGCCCCACTTATGATGATGCCCTTGAGCTTGATGTTG
CCGGTGAAGGGAATGTTGAAGAGGAGCTCTTCATCCGCATCGCTCTCCAC
GTACTTGGACAGATCCTGGCGCTTCTCGTACGGCTTAAAGACACTTTTTC
CCTGGCCATCCGTCTCCTCGTTCAGGCACTCCACATTGTCCAGATCGATT
TTGGTGTACAAGCTGTACTCGATGCCCATTTCTAGGGCGTGGTCCACGTC
CGAGGCCTCGTGGCTGCAGCCGCCGTGATCGTGAGAGTGTCCGTGCGGCA
TGTCGACTGATAACT

BO05877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-PA 636 CG6153-RA 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 821 CG6153-RC 91..723 651..19 3165 100 Minus
CG6153-RA 774 CG6153-RA 91..723 651..19 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693083..12693402 651..332 1600 100 Minus
2L 23513712 2L 12693466..12693658 331..139 965 100 Minus
2L 23513712 2L 12693718..12693841 142..19 620 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:03:25 has no hits.

BO05877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:43 Download gff for BO05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 18..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:08 Download gff for BO05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 18..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:31 Download gff for BO05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 11..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:11 Download gff for BO05877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 11..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:11 Download gff for BO05877.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12693466..12693656 141..331 100 -> Minus
2L 12693720..12693848 11..140 96   Minus
2L 12693083..12693402 332..651 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:31 Download gff for BO05877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12693083..12693402 332..651 100 -> Minus
arm_2L 12693466..12693656 141..331 100 -> Minus
arm_2L 12693720..12693848 11..140 96   Minus

BO05877.5prime Sequence

665 bp (664 high quality bases) assembled on 2005-11-29

> BO05877.5prime
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAG
CAAGCTTTCTAGACC

BO05877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-PA 636 CG6153-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 821 CG6153-RC 91..723 17..649 3165 100 Plus
CG6153-RA 774 CG6153-RA 91..723 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693083..12693402 17..336 1600 100 Plus
2L 23513712 2L 12693466..12693658 337..529 965 100 Plus
2L 23513712 2L 12693718..12693841 526..649 620 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:25:12 has no hits.

BO05877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:44 Download gff for BO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 17..650 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:09 Download gff for BO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-PA 1..636 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:11 Download gff for BO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 17..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:06 Download gff for BO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..730 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:06 Download gff for BO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12693083..12693402 17..336 100 -> Plus
2L 12693466..12693656 337..527 100 -> Plus
2L 12693720..12693848 528..657 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:11 Download gff for BO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12693083..12693402 17..336 100 -> Plus
arm_2L 12693466..12693656 337..527 100 -> Plus
arm_2L 12693720..12693848 528..657 96   Plus

BO05877.complete Sequence

667 bp (667 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630183

> BO05877.complete
GAAGTTATCAGTCGACATGCCGCACGGACACTCTCACGATCACGGCGGCT
GCAGCCACGAGGCCTCGGACGTGGACCACGCCCTAGAAATGGGCATCGAG
TACAGCTTGTACACCAAAATCGATCTGGACAATGTGGAGTGCCTGAACGA
GGAGACGGATGGCCAGGGAAAAAGTGTCTTTAAGCCGTACGAGAAGCGCC
AGGATCTGTCCAAGTACGTGGAGAGCGATGCGGATGAAGAGCTCCTCTTC
AACATTCCCTTCACCGGCAACATCAAGCTCAAGGGCATCATCATAAGTGG
GGCCAATGATGACTCCCATCCAAACATGGTCAAAATCTTCAAGAACCGAC
CCAGGATGACCTTTGATGATGCCAGAGCAAAGCCCGACCAGGAGTTCCAG
CTGACCCGCGATGCCCGCGGAGAAATCGAGTACTCACCCAAAGTGGTCAC
CTTCTCCTCCGTGCACCATCTCTCCCTCTACTTTCCCAGCAATTTTGGCG
AAGACATAACACGCATTTACTATATAGGTCTTCGAGGAGAGTTCACAGAA
GCTCATTACCATGGCGTAACCATATGCAACTACGAATCCCGTGCCAATGC
AGCGGATCACAAGGAAAAGGCTTTCGATGGAGTCGGCAGAGCCATCCAAG
CAAGCTTTCTAGACCAT

BO05877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 636 CG6153-PC 1..633 17..649 3165 100 Plus
CG6153-RA 636 CG6153-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-RC 821 CG6153-RC 91..723 17..649 3165 100 Plus
CG6153-RA 774 CG6153-RA 91..723 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12693083..12693402 17..336 1600 100 Plus
2L 23513712 2L 12693466..12693658 337..529 965 100 Plus
2L 23513712 2L 12693718..12693841 526..649 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:28:54 has no hits.

BO05877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:01 Download gff for BO05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 1..636 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:12 Download gff for BO05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 98..737 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:03 Download gff for BO05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..723 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:01 Download gff for BO05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 61..700 17..657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:22 Download gff for BO05877.complete
Subject Subject Range Query Range Percent Splice Strand
CG6153-RA 91..723 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:22 Download gff for BO05877.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12693083..12693402 17..336 100 -> Plus
2L 12693466..12693656 337..527 100 -> Plus
2L 12693720..12693841 528..651 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:03 Download gff for BO05877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12693083..12693402 17..336 100 -> Plus
arm_2L 12693466..12693656 337..527 100 -> Plus
arm_2L 12693720..12693841 528..651 98   Plus

BO05877.pep Sequence

Translation from 16 to 667

> BO05877.pep
MPHGHSHDHGGCSHEASDVDHALEMGIEYSLYTKIDLDNVECLNEETDGQ
GKSVFKPYEKRQDLSKYVESDADEELLFNIPFTGNIKLKGIIISGANDDS
HPNMVKIFKNRPRMTFDDARAKPDQEFQLTRDARGEIEYSPKVVTFSSVH
HLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKE
KAFDGVGRAIQASFLDH

BO05877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6153-PC 211 CG6153-PC 1..211 1..211 1130 100 Plus
CG6153-PA 211 CG6153-PA 1..211 1..211 1130 100 Plus