Clone Sequence Records
BO05878.3prime Sequence
614 bp (613 high quality bases) assembled on 2005-12-02
> BO05878.3prime
ATGGTCTAGAAAGCTTGCGGAGGTGGTCTCGAAGTACTCCTTGGACTTGG
TGGGATCGGCCACCATGGTCTTCTGGCCGGGCTTCCAGTTGGCGGGGCAG
ACCTCGCCGTACTTGTCGGTGTACTGGAAGGCCTGGACGAGACGCAGGGT
CTCCTCCACACTGCGACCTACGGGCAGATCGTTGACGGTGATCTGGCGCA
AGTTCTGCTTGTCATCGATGATGAACAGGCCGCGGAAGGGGATGCCAGTC
TCCTCATCGAGCACTCCATAGTCGCGGGCCACCTTCATCGACTTGTCAGC
CAGCAGTGGAATGTCCATGCTGCCCAGACCACCCTGCTTCCTTGGCGTGT
TGATCCAGGCCAAGTGGGTGAACTGGCTGTCCGTGGAGCAACCGATCACC
TCGCAATTGATCTTGCGGAACTCGGCGGCGCTCTCCGAGAACGCAATGAT
CTCGGTGGGGCACACGAAGGTGAAGTCCAGCGGGTAGAAGAAAAGCACCA
GGTATTTGCCCTTGTAGTCGCTCAACTTGATGTCCTTGAAAACACCGTTG
ACGACGGCGGTGCCGGCGAATGCGGGAGCGGGCTTCTGTAGCTGGGGCAT
GTCGACTGATAACT
BO05878.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1633-PB | 585 | Jafrac1-RB | 1..582 | 600..19 | 2910 | 100 | Minus |
CG1633-PA | 585 | Jafrac1-RA | 1..582 | 600..19 | 2910 | 100 | Minus |
CG5826-PA | 705 | Prx5037-RA | 196..263 | 519..452 | 140 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RD | 1080 | CG1633-RD | 207..789 | 601..19 | 2915 | 100 | Minus |
Jafrac1-RE | 976 | CG1633-RE | 104..685 | 600..19 | 2910 | 100 | Minus |
Jafrac1-RC | 1051 | CG1633-RC | 179..760 | 600..19 | 2910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13331122..13331703 | 600..19 | 2910 | 100 | Minus |
3L | 28110227 | 3L | 15208172..15208477 | 360..55 | 390 | 75.2 | Minus |
3L | 28110227 | 3L | 3043441..3043611 | 472..302 | 240 | 76 | Minus |
3L | 28110227 | 3L | 3043713..3043818 | 200..95 | 185 | 78.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:55:02 has no hits.
BO05878.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:45 Download gff for
BO05878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PB | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:11 Download gff for
BO05878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PA | 1..585 | 15..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:53 Download gff for
BO05878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..794 | 14..601 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:33 Download gff for
BO05878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..794 | 14..601 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:33 Download gff for
BO05878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13331122..13331708 | 14..600 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:53 Download gff for
BO05878.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13225155..13225741 | 14..600 | 99 | | Minus |
BO05878.5prime Sequence
614 bp (613 high quality bases) assembled on 2005-11-29
> BO05878.5prime
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCGC
AAGCTTTCTAGACC
BO05878.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1633-PB | 585 | Jafrac1-RB | 1..582 | 17..598 | 2910 | 100 | Plus |
CG1633-PA | 585 | Jafrac1-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
CG5826-PA | 705 | Prx5037-RA | 196..263 | 98..165 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RD | 1080 | CG1633-RD | 207..789 | 16..598 | 2915 | 100 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 104..685 | 17..598 | 2910 | 100 | Plus |
Jafrac1-RC | 1051 | CG1633-RC | 179..760 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13331122..13331703 | 17..598 | 2910 | 100 | Plus |
3L | 28110227 | 3L | 15208172..15208477 | 257..562 | 390 | 75.2 | Plus |
3L | 28110227 | 3L | 3043441..3043611 | 145..315 | 240 | 76 | Plus |
3L | 28110227 | 3L | 3043713..3043818 | 417..522 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:03:51 has no hits.
BO05878.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:45 Download gff for
BO05878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PB | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:13 Download gff for
BO05878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1633-PA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:33 Download gff for
BO05878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..794 | 16..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:20 Download gff for
BO05878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 207..794 | 16..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:20 Download gff for
BO05878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13331122..13331708 | 17..603 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:33 Download gff for
BO05878.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13225155..13225741 | 17..603 | 99 | | Plus |
BO05878.complete Sequence
616 bp (616 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630184
> BO05878.complete
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCGC
AAGCTTTCTAGACCAT
BO05878.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RE | 585 | CG1633-PE | 1..582 | 17..598 | 2910 | 100 | Plus |
Jafrac1-RD | 585 | CG1633-PD | 1..582 | 17..598 | 2910 | 100 | Plus |
Jafrac1-RC | 585 | CG1633-PC | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-RD | 1080 | CG1633-RD | 207..789 | 16..598 | 2915 | 100 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 104..685 | 17..598 | 2910 | 100 | Plus |
Jafrac1-RC | 1051 | CG1633-RC | 179..760 | 17..598 | 2910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13331122..13331703 | 17..598 | 2910 | 100 | Plus |
3L | 28110227 | 3L | 15208172..15208477 | 257..562 | 390 | 75.2 | Plus |
3L | 28110227 | 3L | 3043441..3043611 | 145..315 | 240 | 76 | Plus |
3L | 28110227 | 3L | 3043713..3043818 | 417..522 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:14:10 has no hits.
BO05878.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:02 Download gff for
BO05878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RA | 1..585 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:14 Download gff for
BO05878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RA | 130..724 | 10..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:17 Download gff for
BO05878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 208..789 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:02 Download gff for
BO05878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RA | 130..724 | 10..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:44 Download gff for
BO05878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jafrac1-RD | 208..789 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:44 Download gff for
BO05878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13331122..13331703 | 17..600 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:17 Download gff for
BO05878.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13225155..13225736 | 17..600 | 99 | | Plus |
BO05878.pep Sequence
Translation from 16 to 616
> BO05878.pep
MPQLQKPAPAFAGTAVVNGVFKDIKLSDYKGKYLVLFFYPLDFTFVCPTE
IIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLL
ADKSMKVARDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEE
TLRLVQAFQYTDKYGEVCPANWKPGQKTMVADPTKSKEYFETTSASFLDH
BO05878.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jafrac1-PE | 194 | CG1633-PE | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PD | 194 | CG1633-PD | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PC | 194 | CG1633-PC | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PA | 194 | CG1633-PA | 1..194 | 1..194 | 1021 | 100 | Plus |
Jafrac1-PB | 194 | CG1633-PB | 1..194 | 1..194 | 1021 | 100 | Plus |