Clone BO05878 Report

Search the DGRC for BO05878

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptJafrac1-RA
Protein status:BO05878.pep: validated full length
Sequenced Size:616

Clone Sequence Records

BO05878.3prime Sequence

614 bp (613 high quality bases) assembled on 2005-12-02

> BO05878.3prime
ATGGTCTAGAAAGCTTGCGGAGGTGGTCTCGAAGTACTCCTTGGACTTGG
TGGGATCGGCCACCATGGTCTTCTGGCCGGGCTTCCAGTTGGCGGGGCAG
ACCTCGCCGTACTTGTCGGTGTACTGGAAGGCCTGGACGAGACGCAGGGT
CTCCTCCACACTGCGACCTACGGGCAGATCGTTGACGGTGATCTGGCGCA
AGTTCTGCTTGTCATCGATGATGAACAGGCCGCGGAAGGGGATGCCAGTC
TCCTCATCGAGCACTCCATAGTCGCGGGCCACCTTCATCGACTTGTCAGC
CAGCAGTGGAATGTCCATGCTGCCCAGACCACCCTGCTTCCTTGGCGTGT
TGATCCAGGCCAAGTGGGTGAACTGGCTGTCCGTGGAGCAACCGATCACC
TCGCAATTGATCTTGCGGAACTCGGCGGCGCTCTCCGAGAACGCAATGAT
CTCGGTGGGGCACACGAAGGTGAAGTCCAGCGGGTAGAAGAAAAGCACCA
GGTATTTGCCCTTGTAGTCGCTCAACTTGATGTCCTTGAAAACACCGTTG
ACGACGGCGGTGCCGGCGAATGCGGGAGCGGGCTTCTGTAGCTGGGGCAT
GTCGACTGATAACT

BO05878.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1633-PB 585 Jafrac1-RB 1..582 600..19 2910 100 Minus
CG1633-PA 585 Jafrac1-RA 1..582 600..19 2910 100 Minus
CG5826-PA 705 Prx5037-RA 196..263 519..452 140 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RD 1080 CG1633-RD 207..789 601..19 2915 100 Minus
Jafrac1-RE 976 CG1633-RE 104..685 600..19 2910 100 Minus
Jafrac1-RC 1051 CG1633-RC 179..760 600..19 2910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13331122..13331703 600..19 2910 100 Minus
3L 28110227 3L 15208172..15208477 360..55 390 75.2 Minus
3L 28110227 3L 3043441..3043611 472..302 240 76 Minus
3L 28110227 3L 3043713..3043818 200..95 185 78.3 Minus
Blast to na_te.dros performed on 2015-02-13 11:55:02 has no hits.

BO05878.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:45 Download gff for BO05878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PB 1..585 15..600 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:11 Download gff for BO05878.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PA 1..585 15..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:53 Download gff for BO05878.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..794 14..601 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:33 Download gff for BO05878.3prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..794 14..601 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:33 Download gff for BO05878.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13331122..13331708 14..600 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:53 Download gff for BO05878.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13225155..13225741 14..600 99   Minus

BO05878.5prime Sequence

614 bp (613 high quality bases) assembled on 2005-11-29

> BO05878.5prime
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCGC
AAGCTTTCTAGACC

BO05878.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1633-PB 585 Jafrac1-RB 1..582 17..598 2910 100 Plus
CG1633-PA 585 Jafrac1-RA 1..582 17..598 2910 100 Plus
CG5826-PA 705 Prx5037-RA 196..263 98..165 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RD 1080 CG1633-RD 207..789 16..598 2915 100 Plus
Jafrac1-RE 976 CG1633-RE 104..685 17..598 2910 100 Plus
Jafrac1-RC 1051 CG1633-RC 179..760 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13331122..13331703 17..598 2910 100 Plus
3L 28110227 3L 15208172..15208477 257..562 390 75.2 Plus
3L 28110227 3L 3043441..3043611 145..315 240 76 Plus
3L 28110227 3L 3043713..3043818 417..522 185 78.3 Plus
Blast to na_te.dros performed on 2015-02-12 16:03:51 has no hits.

BO05878.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:45 Download gff for BO05878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PB 1..585 17..602 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:13 Download gff for BO05878.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1633-PA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:33 Download gff for BO05878.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..794 16..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:20 Download gff for BO05878.5prime
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 207..794 16..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:20 Download gff for BO05878.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13331122..13331708 17..603 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:33 Download gff for BO05878.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13225155..13225741 17..603 99   Plus

BO05878.complete Sequence

616 bp (616 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630184

> BO05878.complete
GAAGTTATCAGTCGACATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCG
CCGGCACCGCCGTCGTCAACGGTGTTTTCAAGGACATCAAGTTGAGCGAC
TACAAGGGCAAATACCTGGTGCTTTTCTTCTACCCGCTGGACTTCACCTT
CGTGTGCCCCACCGAGATCATTGCGTTCTCGGAGAGCGCCGCCGAGTTCC
GCAAGATCAATTGCGAGGTGATCGGTTGCTCCACGGACAGCCAGTTCACC
CACTTGGCCTGGATCAACACGCCAAGGAAGCAGGGTGGTCTGGGCAGCAT
GGACATTCCACTGCTGGCTGACAAGTCGATGAAGGTGGCCCGCGACTATG
GAGTGCTCGATGAGGAGACTGGCATCCCCTTCCGCGGCCTGTTCATCATC
GATGACAAGCAGAACTTGCGCCAGATCACCGTCAACGATCTGCCCGTAGG
TCGCAGTGTGGAGGAGACCCTGCGTCTCGTCCAGGCCTTCCAGTACACCG
ACAAGTACGGCGAGGTCTGCCCCGCCAACTGGAAGCCCGGCCAGAAGACC
ATGGTGGCCGATCCCACCAAGTCCAAGGAGTACTTCGAGACCACCTCCGC
AAGCTTTCTAGACCAT

BO05878.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RE 585 CG1633-PE 1..582 17..598 2910 100 Plus
Jafrac1-RD 585 CG1633-PD 1..582 17..598 2910 100 Plus
Jafrac1-RC 585 CG1633-PC 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-RD 1080 CG1633-RD 207..789 16..598 2915 100 Plus
Jafrac1-RE 976 CG1633-RE 104..685 17..598 2910 100 Plus
Jafrac1-RC 1051 CG1633-RC 179..760 17..598 2910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13331122..13331703 17..598 2910 100 Plus
3L 28110227 3L 15208172..15208477 257..562 390 75.2 Plus
3L 28110227 3L 3043441..3043611 145..315 240 76 Plus
3L 28110227 3L 3043713..3043818 417..522 185 78.3 Plus
Blast to na_te.dros performed on 2014-11-27 20:14:10 has no hits.

BO05878.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:02 Download gff for BO05878.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RA 1..585 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:14 Download gff for BO05878.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RA 130..724 10..603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:17 Download gff for BO05878.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 208..789 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:02 Download gff for BO05878.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RA 130..724 10..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:44 Download gff for BO05878.complete
Subject Subject Range Query Range Percent Splice Strand
Jafrac1-RD 208..789 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:44 Download gff for BO05878.complete
Subject Subject Range Query Range Percent Splice Strand
X 13331122..13331703 17..600 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:17 Download gff for BO05878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13225155..13225736 17..600 99   Plus

BO05878.pep Sequence

Translation from 16 to 616

> BO05878.pep
MPQLQKPAPAFAGTAVVNGVFKDIKLSDYKGKYLVLFFYPLDFTFVCPTE
IIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLL
ADKSMKVARDYGVLDEETGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEE
TLRLVQAFQYTDKYGEVCPANWKPGQKTMVADPTKSKEYFETTSASFLDH

BO05878.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Jafrac1-PE 194 CG1633-PE 1..194 1..194 1021 100 Plus
Jafrac1-PD 194 CG1633-PD 1..194 1..194 1021 100 Plus
Jafrac1-PC 194 CG1633-PC 1..194 1..194 1021 100 Plus
Jafrac1-PA 194 CG1633-PA 1..194 1..194 1021 100 Plus
Jafrac1-PB 194 CG1633-PB 1..194 1..194 1021 100 Plus