Clone Sequence Records
BO05879.3prime Sequence
536 bp (535 high quality bases) assembled on 2005-12-02
> BO05879.3prime
ATGGTCTAGAAAGCTTGCGGAGCTCTGGGTAACCGCCGGCTGCGATTGCT
GCTGCGACTGCAATTTCGCTGCAGCAGCCTGCTTCATCTCCAGCACACTC
ATCACTGAGTTATAGAAGCGCGTCTTTTGCAGGTGGATCTTTTCGATTTT
CTCGATCTGCTCCTGCACGTACTCCACGCGTCGCTTGAAGTAGTCTTTGG
AGCCTTCCAGATCCTTTTCAATGTAGTAGCCGGTGCCGATGTCTATGACG
AACCTGTTGAGATCCTTGACCCGTCCTGGCACATACATACTGCTGGTCAG
GGGCACCAGGATCTGACGGTTCTCCCAATTGGGTTGAAAGGTTCCCAGCG
CCTCCTTGGATCCGGCGTACTTGGCTTGACAGCCGTGAAGCGTCGACAGC
GAGTCCTGTACGTTGGTAATCTCCTGCTCGAACTCCTGCTTGATCTGAAT
CAGCTGTTCCGGACTCAACTTGGTCAGGTCGATCATCTCGGACTTGGCGG
GTGCGCTTGGGGTGGCAGCCATGTCGACTGATAACT
BO05879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-PA | 507 | CG7048-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 894 | CG7048-RB | 256..759 | 522..19 | 2520 | 100 | Minus |
CG7048-RA | 657 | CG7048-RA | 94..597 | 522..19 | 2520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22487508..22487720 | 425..213 | 1065 | 100 | Minus |
3R | 32079331 | 3R | 22487779..22487975 | 215..19 | 985 | 100 | Minus |
3R | 32079331 | 3R | 22487294..22487393 | 522..423 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:45:21 has no hits.
BO05879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:47 Download gff for
BO05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:14 Download gff for
BO05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:32 Download gff for
BO05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 92..599 | 19..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:53 Download gff for
BO05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 90..597 | 19..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:53 Download gff for
BO05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22487290..22487392 | 424..529 | 97 | -> | Minus |
3R | 22487510..22487719 | 214..423 | 100 | -> | Minus |
3R | 22487781..22487975 | 19..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:32 Download gff for
BO05879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18313012..18313114 | 424..529 | 97 | -> | Minus |
arm_3R | 18313232..18313441 | 214..423 | 100 | -> | Minus |
arm_3R | 18313503..18313697 | 19..213 | 100 | | Minus |
BO05879.5prime Sequence
536 bp (535 high quality bases) assembled on 2005-11-29
> BO05879.5prime
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCGCAAGCTTTCTAGACC
BO05879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-PA | 507 | CG7048-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 894 | CG7048-RB | 256..759 | 17..520 | 2520 | 100 | Plus |
CG7048-RA | 657 | CG7048-RA | 94..597 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22487508..22487720 | 114..326 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 22487779..22487975 | 324..520 | 985 | 100 | Plus |
3R | 32079331 | 3R | 22487294..22487393 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:04:17 has no hits.
BO05879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:48 Download gff for
BO05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:15 Download gff for
BO05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:35 Download gff for
BO05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 92..599 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:48 Download gff for
BO05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 90..597 | 10..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:48 Download gff for
BO05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22487290..22487392 | 10..115 | 97 | -> | Plus |
3R | 22487510..22487719 | 116..325 | 100 | -> | Plus |
3R | 22487781..22487975 | 326..520 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:35 Download gff for
BO05879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18313503..18313697 | 326..520 | 100 | | Plus |
arm_3R | 18313012..18313114 | 10..115 | 97 | -> | Plus |
arm_3R | 18313232..18313441 | 116..325 | 100 | -> | Plus |
BO05879.complete Sequence
538 bp (538 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630185
> BO05879.complete
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCGCAAGCTTTCTAGACCAT
BO05879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 507 | CG7048-PB | 1..504 | 17..520 | 2520 | 100 | Plus |
CG7048-RA | 507 | CG7048-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-RB | 894 | CG7048-RB | 256..759 | 17..520 | 2520 | 100 | Plus |
CG7048-RA | 657 | CG7048-RA | 94..597 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22487508..22487720 | 114..326 | 1065 | 100 | Plus |
3R | 32079331 | 3R | 22487779..22487975 | 324..520 | 985 | 100 | Plus |
3R | 32079331 | 3R | 22487294..22487393 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:46:54 has no hits.
BO05879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:03 Download gff for
BO05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:15 Download gff for
BO05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 86..593 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:30 Download gff for
BO05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 96..599 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:03 Download gff for
BO05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 86..593 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:07 Download gff for
BO05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7048-RA | 94..597 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:07 Download gff for
BO05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22487294..22487392 | 17..115 | 100 | -> | Plus |
3R | 22487510..22487719 | 116..325 | 100 | -> | Plus |
3R | 22487781..22487975 | 326..522 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:30 Download gff for
BO05879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18313016..18313114 | 17..115 | 100 | -> | Plus |
arm_3R | 18313232..18313441 | 116..325 | 100 | -> | Plus |
arm_3R | 18313503..18313697 | 326..522 | 98 | | Plus |
BO05879.pep Sequence
Translation from 16 to 538
> BO05879.pep
MAATPSAPAKSEMIDLTKLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQA
KYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTGYY
IEKDLEGSKDYFKRRVEYVQEQIEKIEKIHLQKTRFYNSVMSVLEMKQAA
AAKLQSQQQSQPAVTQSSASFLDH
BO05879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7048-PB | 168 | CG7048-PB | 1..168 | 1..168 | 846 | 100 | Plus |
CG7048-PA | 168 | CG7048-PA | 1..168 | 1..168 | 846 | 100 | Plus |