Clone BO05879 Report

Search the DGRC for BO05879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG7048-RA
Protein status:BO05879.pep: validated full length
Sequenced Size:538

Clone Sequence Records

BO05879.3prime Sequence

536 bp (535 high quality bases) assembled on 2005-12-02

> BO05879.3prime
ATGGTCTAGAAAGCTTGCGGAGCTCTGGGTAACCGCCGGCTGCGATTGCT
GCTGCGACTGCAATTTCGCTGCAGCAGCCTGCTTCATCTCCAGCACACTC
ATCACTGAGTTATAGAAGCGCGTCTTTTGCAGGTGGATCTTTTCGATTTT
CTCGATCTGCTCCTGCACGTACTCCACGCGTCGCTTGAAGTAGTCTTTGG
AGCCTTCCAGATCCTTTTCAATGTAGTAGCCGGTGCCGATGTCTATGACG
AACCTGTTGAGATCCTTGACCCGTCCTGGCACATACATACTGCTGGTCAG
GGGCACCAGGATCTGACGGTTCTCCCAATTGGGTTGAAAGGTTCCCAGCG
CCTCCTTGGATCCGGCGTACTTGGCTTGACAGCCGTGAAGCGTCGACAGC
GAGTCCTGTACGTTGGTAATCTCCTGCTCGAACTCCTGCTTGATCTGAAT
CAGCTGTTCCGGACTCAACTTGGTCAGGTCGATCATCTCGGACTTGGCGG
GTGCGCTTGGGGTGGCAGCCATGTCGACTGATAACT

BO05879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-PA 507 CG7048-RA 1..504 522..19 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 894 CG7048-RB 256..759 522..19 2520 100 Minus
CG7048-RA 657 CG7048-RA 94..597 522..19 2520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22487508..22487720 425..213 1065 100 Minus
3R 32079331 3R 22487779..22487975 215..19 985 100 Minus
3R 32079331 3R 22487294..22487393 522..423 500 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:45:21 has no hits.

BO05879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:47 Download gff for BO05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 18..522 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:14 Download gff for BO05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 18..522 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:32 Download gff for BO05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 92..599 19..529 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:25:53 Download gff for BO05879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 90..597 19..529 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:25:53 Download gff for BO05879.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22487290..22487392 424..529 97 -> Minus
3R 22487510..22487719 214..423 100 -> Minus
3R 22487781..22487975 19..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:32 Download gff for BO05879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18313012..18313114 424..529 97 -> Minus
arm_3R 18313232..18313441 214..423 100 -> Minus
arm_3R 18313503..18313697 19..213 100   Minus

BO05879.5prime Sequence

536 bp (535 high quality bases) assembled on 2005-11-29

> BO05879.5prime
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCGCAAGCTTTCTAGACC

BO05879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-PA 507 CG7048-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 894 CG7048-RB 256..759 17..520 2520 100 Plus
CG7048-RA 657 CG7048-RA 94..597 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22487508..22487720 114..326 1065 100 Plus
3R 32079331 3R 22487779..22487975 324..520 985 100 Plus
3R 32079331 3R 22487294..22487393 17..116 500 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:04:17 has no hits.

BO05879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:48 Download gff for BO05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:15 Download gff for BO05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:35 Download gff for BO05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 92..599 10..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:48 Download gff for BO05879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 90..597 10..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:48 Download gff for BO05879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22487290..22487392 10..115 97 -> Plus
3R 22487510..22487719 116..325 100 -> Plus
3R 22487781..22487975 326..520 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:35 Download gff for BO05879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18313503..18313697 326..520 100   Plus
arm_3R 18313012..18313114 10..115 97 -> Plus
arm_3R 18313232..18313441 116..325 100 -> Plus

BO05879.complete Sequence

538 bp (538 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630185

> BO05879.complete
GAAGTTATCAGTCGACATGGCTGCCACCCCAAGCGCACCCGCCAAGTCCG
AGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGATCAAG
CAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCT
TCACGGCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCT
TTCAACCCAATTGGGAGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGT
ATGTATGTGCCAGGACGGGTCAAGGATCTCAACAGGTTCGTCATAGACAT
CGGCACCGGCTACTACATTGAAAAGGATCTGGAAGGCTCCAAAGACTACT
TCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATCGAAAAG
ATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGA
GATGAAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGC
CGGCGGTTACCCAGAGCTCCGCAAGCTTTCTAGACCAT

BO05879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 507 CG7048-PB 1..504 17..520 2520 100 Plus
CG7048-RA 507 CG7048-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-RB 894 CG7048-RB 256..759 17..520 2520 100 Plus
CG7048-RA 657 CG7048-RA 94..597 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22487508..22487720 114..326 1065 100 Plus
3R 32079331 3R 22487779..22487975 324..520 985 100 Plus
3R 32079331 3R 22487294..22487393 17..116 500 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:46:54 has no hits.

BO05879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:03 Download gff for BO05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 1..507 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:15 Download gff for BO05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 86..593 10..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:30 Download gff for BO05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 96..599 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:03 Download gff for BO05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 86..593 10..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:07 Download gff for BO05879.complete
Subject Subject Range Query Range Percent Splice Strand
CG7048-RA 94..597 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:07 Download gff for BO05879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22487294..22487392 17..115 100 -> Plus
3R 22487510..22487719 116..325 100 -> Plus
3R 22487781..22487975 326..522 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:30 Download gff for BO05879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18313016..18313114 17..115 100 -> Plus
arm_3R 18313232..18313441 116..325 100 -> Plus
arm_3R 18313503..18313697 326..522 98   Plus

BO05879.pep Sequence

Translation from 16 to 538

> BO05879.pep
MAATPSAPAKSEMIDLTKLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQA
KYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTGYY
IEKDLEGSKDYFKRRVEYVQEQIEKIEKIHLQKTRFYNSVMSVLEMKQAA
AAKLQSQQQSQPAVTQSSASFLDH

BO05879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7048-PB 168 CG7048-PB 1..168 1..168 846 100 Plus
CG7048-PA 168 CG7048-PA 1..168 1..168 846 100 Plus