Clone BO05880 Report

Search the DGRC for BO05880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptGbeta76C-RA
Protein status:BO05880.pep: validated full length
Sequenced Size:1072

Clone Sequence Records

BO05880.5prime Sequence

832 bp (830 high quality bases) assembled on 2005-11-29

> BO05880.5prime
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCAAACGGCGCGCATGTACGACCTGC
GGGGCGACCAGCAAATCGCCCAGTATGAACCG

BO05880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8770-PA 1041 Gbeta76C-RA 1..816 17..832 4030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1466 CG8770-RA 92..907 17..832 4050 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19688212..19688663 80..531 2245 99.8 Plus
3L 28110227 3L 19688718..19688919 532..733 1010 100 Plus
3L 28110227 3L 19689059..19689157 734..832 465 98 Plus
3L 28110227 3L 19687728..19687797 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:26:49 has no hits.

BO05880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:51 Download gff for BO05880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:18 Download gff for BO05880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:12:58 Download gff for BO05880.5prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 88..907 9..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:06 Download gff for BO05880.5prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 88..907 9..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:06 Download gff for BO05880.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19687724..19687796 9..85 94 -> Plus
3L 19688218..19688663 86..531 100 -> Plus
3L 19688718..19688919 532..733 100 -> Plus
3L 19689059..19689157 734..832 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:12:58 Download gff for BO05880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19680824..19680896 9..85 94 -> Plus
arm_3L 19681318..19681763 86..531 100 -> Plus
arm_3L 19681818..19682019 532..733 100 -> Plus
arm_3L 19682159..19682257 734..832 98   Plus

BO05880.3prime Sequence

931 bp (728 high quality bases) assembled on 2005-12-02

> BO05880.3prime
ATGGTCTAGAAAGCTTGCGAGCCACAGACGCACTTGCTGATCCCAACTGG
TGGACGCCAGGCACATGCCATTGGGGCACAGGCTGATGCAAGTGATGCGG
TTCTCGTGACCAGACAGTGTGCCCGTGTGCCGCTGCTTCATCGTGTCCCA
CGAGTGCACGTTGCCCTCAATGCCGCCGCACATGAGGTAGCGCCCGCTGG
TCGATAGAGCGCACGACGTGAAGCCAGTGTTCTTCTGGGGCGGTTCATAC
TGGGCGATTTGCTGGTCCGCCCGCAGGTCGTACATGCGCGCCGTTTGGTC
CTCCGAGCAGGAGGCGAACCCGAAGCCACTGGGATGGTAGCAGACGGATG
ACACGTCCATGTCGTGACCGAAGAACATCTGCTTGTGGCCCTCCTCTCGC
ACATCCCACAACTTGGCAGTTTTGTCCACAGAGCCAGTGATATAGGTCTT
CATATCTGGCGAAAGCGATAAGCCAGCGATATCACCAGCGTGTCCATTGA
AATCCATTGTCTTGACACCCTTCTCCAGATCCCAATGGCATATTTTCATA
TCTCCCGAGCCGGTGATCAGATGGCCATCGTCGAGGAAGCGACAGGAGCT
GAGGAATCCCTCGTAGCCCATCAGCTCTTTGACCATCTTGGCCACTCCGG
AGGCATCGCGATTGTTCACATCGTAGACGGTGCACTGGTTGTCCATTCCT
CCGCAGGCCACAAAGTTACCCGACGGCGAANAGGCCACCGTCATTACCCA
GGCGGATCTCAAGGGGATGATCTGCACCTTGTTGGCGGTCCAGGTGTCCC
AGATGATCAGCTTGCCGTCCAGCGATCCAGTGACGCAGTGCCGCGAGTCC
CCGGAAAATGCACCGATTCACCTTGTTGATGTGNCCCTTGAGATCTTTCT
GGATGAGATCGAATCTTGGGCACATCCCCCA

BO05880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8770-PA 1041 Gbeta76C-RA 203..1038 854..19 4161 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1466 CG8770-RA 213..1129 931..19 4433 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19688270..19688663 931..542 1718 98 Minus
3L 28110227 3L 19688718..19688919 541..340 1010 100 Minus
3L 28110227 3L 19689059..19689188 339..210 650 100 Minus
3L 28110227 3L 19689547..19689655 127..19 530 99.1 Minus
3L 28110227 3L 19689271..19689359 210..122 445 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:57:55 has no hits.

BO05880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:50 Download gff for BO05880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 123..1041 15..930 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:17 Download gff for BO05880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8770-PA 123..1041 15..930 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:58 Download gff for BO05880.3prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 214..1135 12..930 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:17 Download gff for BO05880.3prime
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 214..1135 12..930 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:17 Download gff for BO05880.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19689059..19689188 210..339 100 -> Minus
3L 19689272..19689358 123..209 100 -> Minus
3L 19689552..19689661 12..122 97   Minus
3L 19688271..19688663 542..930 97 -> Minus
3L 19688718..19688919 340..541 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:58 Download gff for BO05880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19681371..19681763 542..930 97 -> Minus
arm_3L 19681818..19682019 340..541 100 -> Minus
arm_3L 19682159..19682288 210..339 100 -> Minus
arm_3L 19682372..19682458 123..209 100 -> Minus
arm_3L 19682652..19682761 12..122 97   Minus

BO05880.complete Sequence

1072 bp (1072 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630186

> BO05880.complete
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCAAACGGCGCGCATGTACGACCTGC
GGGCGGACCAGCAAATCGCCCAGTATGAACCGCCCCAGAAGAACACTGGC
TTCACGTCGTGCGCTCTATCGACCAGCGGGCGCTACCTCATGTGCGGCGG
CATTGAGGGCAACGTGCACTCGTGGGACACGATGAAGCAGCGGCACACGG
GCACACTGTCTGGTCACGAGAACCGCATCACTTGCATCAGCCTGTGCCCC
AATGGCATGTGCCTGGCGTCCACCAGTTGGGATCAGCAAGTGCGTCTGTG
GCTCGCAAGCTTTCTAGACCAT

BO05880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1041 CG8770-PA 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-RA 1466 CG8770-RA 92..1129 17..1054 5190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19688212..19688663 80..531 2245 99.8 Plus
3L 28110227 3L 19688718..19688919 532..733 1010 100 Plus
3L 28110227 3L 19689059..19689188 734..863 650 100 Plus
3L 28110227 3L 19689547..19689655 946..1054 530 99.1 Plus
3L 28110227 3L 19689271..19689359 863..951 445 100 Plus
3L 28110227 3L 19687728..19687797 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:50:31 has no hits.

BO05880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:04 Download gff for BO05880.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 1..1041 17..1058 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:17 Download gff for BO05880.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 97..1144 9..1061 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:19 Download gff for BO05880.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 92..1129 17..1056 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:04 Download gff for BO05880.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 97..1144 9..1061 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:03 Download gff for BO05880.complete
Subject Subject Range Query Range Percent Splice Strand
Gbeta76C-RA 92..1129 17..1056 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:03 Download gff for BO05880.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19687728..19687796 17..85 100 -> Plus
3L 19688218..19688663 86..531 100 -> Plus
3L 19688718..19688919 532..733 100 -> Plus
3L 19689059..19689188 734..863 100 -> Plus
3L 19689272..19689358 864..950 100 -> Plus
3L 19689552..19689655 951..1056 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:19 Download gff for BO05880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19680828..19680896 17..85 100 -> Plus
arm_3L 19681318..19681763 86..531 100 -> Plus
arm_3L 19681818..19682019 532..733 100 -> Plus
arm_3L 19682159..19682288 734..863 100 -> Plus
arm_3L 19682372..19682458 864..950 100 -> Plus
arm_3L 19682652..19682755 951..1056 98   Plus

BO05880.pep Sequence

Translation from 16 to 1072

> BO05880.pep
MPKIDPETQKLYDEINGMIQKFKDDQKSKADCTLADKCGDMGDVPKIRFS
SKKILKGHINKVNSVHFAGDSRHCVTGSLDGKLIIWDTWTANKVQIIPLR
SAWVMTVAFSPSGNFVACGGMDNQCTVYDVNNRDASGVAKMVKELMGYEG
FLSSCRFLDDGHLITGSGDMKICHWDLEKGVKTMDFNGHAGDIAGLSLSP
DMKTYITGSVDKTAKLWDVREEGHKQMFFGHDMDVSSVCYHPSGFGFASC
SEDQTARMYDLRADQQIAQYEPPQKNTGFTSCALSTSGRYLMCGGIEGNV
HSWDTMKQRHTGTLSGHENRITCISLCPNGMCLASTSWDQQVRLWLASFL
DH

BO05880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Gbeta76C-PA 346 CG8770-PA 1..346 1..346 1889 100 Plus
Gbeta13F-PH 340 CG10545-PH 3..339 7..345 838 43.7 Plus
Gbeta13F-PG 340 CG10545-PG 3..339 7..345 838 43.7 Plus
Gbeta13F-PF 340 CG10545-PF 3..339 7..345 838 43.7 Plus
Gbeta13F-PE 340 CG10545-PE 3..339 7..345 838 43.7 Plus