Clone Sequence Records
BO05880.5prime Sequence
832 bp (830 high quality bases) assembled on 2005-11-29
> BO05880.5prime
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCAAACGGCGCGCATGTACGACCTGC
GGGGCGACCAGCAAATCGCCCAGTATGAACCG
BO05880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8770-PA | 1041 | Gbeta76C-RA | 1..816 | 17..832 | 4030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1466 | CG8770-RA | 92..907 | 17..832 | 4050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19688212..19688663 | 80..531 | 2245 | 99.8 | Plus |
3L | 28110227 | 3L | 19688718..19688919 | 532..733 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 19689059..19689157 | 734..832 | 465 | 98 | Plus |
3L | 28110227 | 3L | 19687728..19687797 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:26:49 has no hits.
BO05880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:51 Download gff for
BO05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:18 Download gff for
BO05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:12:58 Download gff for
BO05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 88..907 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:06 Download gff for
BO05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 88..907 | 9..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:06 Download gff for
BO05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19687724..19687796 | 9..85 | 94 | -> | Plus |
3L | 19688218..19688663 | 86..531 | 100 | -> | Plus |
3L | 19688718..19688919 | 532..733 | 100 | -> | Plus |
3L | 19689059..19689157 | 734..832 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:12:58 Download gff for
BO05880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19680824..19680896 | 9..85 | 94 | -> | Plus |
arm_3L | 19681318..19681763 | 86..531 | 100 | -> | Plus |
arm_3L | 19681818..19682019 | 532..733 | 100 | -> | Plus |
arm_3L | 19682159..19682257 | 734..832 | 98 | | Plus |
BO05880.3prime Sequence
931 bp (728 high quality bases) assembled on 2005-12-02
> BO05880.3prime
ATGGTCTAGAAAGCTTGCGAGCCACAGACGCACTTGCTGATCCCAACTGG
TGGACGCCAGGCACATGCCATTGGGGCACAGGCTGATGCAAGTGATGCGG
TTCTCGTGACCAGACAGTGTGCCCGTGTGCCGCTGCTTCATCGTGTCCCA
CGAGTGCACGTTGCCCTCAATGCCGCCGCACATGAGGTAGCGCCCGCTGG
TCGATAGAGCGCACGACGTGAAGCCAGTGTTCTTCTGGGGCGGTTCATAC
TGGGCGATTTGCTGGTCCGCCCGCAGGTCGTACATGCGCGCCGTTTGGTC
CTCCGAGCAGGAGGCGAACCCGAAGCCACTGGGATGGTAGCAGACGGATG
ACACGTCCATGTCGTGACCGAAGAACATCTGCTTGTGGCCCTCCTCTCGC
ACATCCCACAACTTGGCAGTTTTGTCCACAGAGCCAGTGATATAGGTCTT
CATATCTGGCGAAAGCGATAAGCCAGCGATATCACCAGCGTGTCCATTGA
AATCCATTGTCTTGACACCCTTCTCCAGATCCCAATGGCATATTTTCATA
TCTCCCGAGCCGGTGATCAGATGGCCATCGTCGAGGAAGCGACAGGAGCT
GAGGAATCCCTCGTAGCCCATCAGCTCTTTGACCATCTTGGCCACTCCGG
AGGCATCGCGATTGTTCACATCGTAGACGGTGCACTGGTTGTCCATTCCT
CCGCAGGCCACAAAGTTACCCGACGGCGAANAGGCCACCGTCATTACCCA
GGCGGATCTCAAGGGGATGATCTGCACCTTGTTGGCGGTCCAGGTGTCCC
AGATGATCAGCTTGCCGTCCAGCGATCCAGTGACGCAGTGCCGCGAGTCC
CCGGAAAATGCACCGATTCACCTTGTTGATGTGNCCCTTGAGATCTTTCT
GGATGAGATCGAATCTTGGGCACATCCCCCA
BO05880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8770-PA | 1041 | Gbeta76C-RA | 203..1038 | 854..19 | 4161 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1466 | CG8770-RA | 213..1129 | 931..19 | 4433 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19688270..19688663 | 931..542 | 1718 | 98 | Minus |
3L | 28110227 | 3L | 19688718..19688919 | 541..340 | 1010 | 100 | Minus |
3L | 28110227 | 3L | 19689059..19689188 | 339..210 | 650 | 100 | Minus |
3L | 28110227 | 3L | 19689547..19689655 | 127..19 | 530 | 99.1 | Minus |
3L | 28110227 | 3L | 19689271..19689359 | 210..122 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:57:55 has no hits.
BO05880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:50 Download gff for
BO05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 123..1041 | 15..930 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:17 Download gff for
BO05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8770-PA | 123..1041 | 15..930 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:58 Download gff for
BO05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 214..1135 | 12..930 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:17 Download gff for
BO05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 214..1135 | 12..930 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:17 Download gff for
BO05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19689059..19689188 | 210..339 | 100 | -> | Minus |
3L | 19689272..19689358 | 123..209 | 100 | -> | Minus |
3L | 19689552..19689661 | 12..122 | 97 | | Minus |
3L | 19688271..19688663 | 542..930 | 97 | -> | Minus |
3L | 19688718..19688919 | 340..541 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:58 Download gff for
BO05880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19681371..19681763 | 542..930 | 97 | -> | Minus |
arm_3L | 19681818..19682019 | 340..541 | 100 | -> | Minus |
arm_3L | 19682159..19682288 | 210..339 | 100 | -> | Minus |
arm_3L | 19682372..19682458 | 123..209 | 100 | -> | Minus |
arm_3L | 19682652..19682761 | 12..122 | 97 | | Minus |
BO05880.complete Sequence
1072 bp (1072 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630186
> BO05880.complete
GAAGTTATCAGTCGACATGCCGAAAATTGACCCAGAAACACAAAAACTCT
ACGACGAAATCAATGGCATGATACAGAAGTTTAAGGATGACCAAAAAAGC
AAGGCTGATTGCACGTTGGCCGATAAATGCGGCGACATGGGGGATGTGCC
CAAGATTCGATTCTCATCCAAGAAGATTCTCAAGGGCCACATCAACAAGG
TGAATTCGGTGCATTTTGCCGGGGACTCGCGGCACTGCGTCACTGGATCG
CTGGACGGCAAGCTGATCATCTGGGACACCTGGACCGCCAACAAGGTGCA
GATCATCCCCTTGAGATCCGCCTGGGTAATGACGGTGGCCTTTTCGCCGT
CGGGTAACTTTGTGGCCTGCGGAGGAATGGACAACCAGTGCACCGTCTAC
GATGTGAACAATCGCGATGCCTCCGGAGTGGCCAAGATGGTCAAAGAGCT
GATGGGCTACGAGGGATTCCTCAGCTCCTGTCGCTTCCTCGACGATGGCC
ATCTGATCACCGGCTCGGGAGATATGAAAATATGCCATTGGGATCTGGAG
AAGGGTGTCAAGACAATGGATTTCAATGGACACGCTGGTGATATCGCTGG
CTTATCGCTTTCGCCAGATATGAAGACCTATATCACTGGCTCTGTGGACA
AAACTGCCAAGTTGTGGGATGTGCGAGAGGAGGGCCACAAGCAGATGTTC
TTCGGTCACGACATGGACGTGTCATCCGTCTGCTACCATCCCAGTGGCTT
CGGGTTCGCCTCCTGCTCGGAGGACCAAACGGCGCGCATGTACGACCTGC
GGGCGGACCAGCAAATCGCCCAGTATGAACCGCCCCAGAAGAACACTGGC
TTCACGTCGTGCGCTCTATCGACCAGCGGGCGCTACCTCATGTGCGGCGG
CATTGAGGGCAACGTGCACTCGTGGGACACGATGAAGCAGCGGCACACGG
GCACACTGTCTGGTCACGAGAACCGCATCACTTGCATCAGCCTGTGCCCC
AATGGCATGTGCCTGGCGTCCACCAGTTGGGATCAGCAAGTGCGTCTGTG
GCTCGCAAGCTTTCTAGACCAT
BO05880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1041 | CG8770-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-RA | 1466 | CG8770-RA | 92..1129 | 17..1054 | 5190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19688212..19688663 | 80..531 | 2245 | 99.8 | Plus |
3L | 28110227 | 3L | 19688718..19688919 | 532..733 | 1010 | 100 | Plus |
3L | 28110227 | 3L | 19689059..19689188 | 734..863 | 650 | 100 | Plus |
3L | 28110227 | 3L | 19689547..19689655 | 946..1054 | 530 | 99.1 | Plus |
3L | 28110227 | 3L | 19689271..19689359 | 863..951 | 445 | 100 | Plus |
3L | 28110227 | 3L | 19687728..19687797 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:50:31 has no hits.
BO05880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:04 Download gff for
BO05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 1..1041 | 17..1058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:17 Download gff for
BO05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 97..1144 | 9..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:19 Download gff for
BO05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 92..1129 | 17..1056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:04 Download gff for
BO05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 97..1144 | 9..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:03 Download gff for
BO05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbeta76C-RA | 92..1129 | 17..1056 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:03 Download gff for
BO05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19687728..19687796 | 17..85 | 100 | -> | Plus |
3L | 19688218..19688663 | 86..531 | 100 | -> | Plus |
3L | 19688718..19688919 | 532..733 | 100 | -> | Plus |
3L | 19689059..19689188 | 734..863 | 100 | -> | Plus |
3L | 19689272..19689358 | 864..950 | 100 | -> | Plus |
3L | 19689552..19689655 | 951..1056 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:19 Download gff for
BO05880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19680828..19680896 | 17..85 | 100 | -> | Plus |
arm_3L | 19681318..19681763 | 86..531 | 100 | -> | Plus |
arm_3L | 19681818..19682019 | 532..733 | 100 | -> | Plus |
arm_3L | 19682159..19682288 | 734..863 | 100 | -> | Plus |
arm_3L | 19682372..19682458 | 864..950 | 100 | -> | Plus |
arm_3L | 19682652..19682755 | 951..1056 | 98 | | Plus |
BO05880.pep Sequence
Translation from 16 to 1072
> BO05880.pep
MPKIDPETQKLYDEINGMIQKFKDDQKSKADCTLADKCGDMGDVPKIRFS
SKKILKGHINKVNSVHFAGDSRHCVTGSLDGKLIIWDTWTANKVQIIPLR
SAWVMTVAFSPSGNFVACGGMDNQCTVYDVNNRDASGVAKMVKELMGYEG
FLSSCRFLDDGHLITGSGDMKICHWDLEKGVKTMDFNGHAGDIAGLSLSP
DMKTYITGSVDKTAKLWDVREEGHKQMFFGHDMDVSSVCYHPSGFGFASC
SEDQTARMYDLRADQQIAQYEPPQKNTGFTSCALSTSGRYLMCGGIEGNV
HSWDTMKQRHTGTLSGHENRITCISLCPNGMCLASTSWDQQVRLWLASFL
DH
BO05880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbeta76C-PA | 346 | CG8770-PA | 1..346 | 1..346 | 1889 | 100 | Plus |
Gbeta13F-PH | 340 | CG10545-PH | 3..339 | 7..345 | 838 | 43.7 | Plus |
Gbeta13F-PG | 340 | CG10545-PG | 3..339 | 7..345 | 838 | 43.7 | Plus |
Gbeta13F-PF | 340 | CG10545-PF | 3..339 | 7..345 | 838 | 43.7 | Plus |
Gbeta13F-PE | 340 | CG10545-PE | 3..339 | 7..345 | 838 | 43.7 | Plus |