Clone Sequence Records
BO05881.3prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-02
> BO05881.3prime
ATGGTCTAGAAAGCTTGCCTCAATGCTAAGTGGCTTAAACTCGCCCTCCT
TAACCCATGACAGACCAGTTGCATGTCCACCATTTGCTTGTTGCGCTGAA
GGCTCCGTCAGCTTGCTTCTTCCGGCCTTGATGCGCTCCAGAACGGGCCC
GTGCACGTCCTGCTGGAACTTCTCGAATACTATGTAGTGCGGATCTTCGG
TGGGTGGGGTGTCAAATATATGCTCCTTGCTCTCCTTGATATTTTCCTGT
ACGCGAGCAACATACTCCTCCTTGTTATTCATCAGCAGCTCCGCAGCCTC
GCTGTTTTTGAGCTTATCTACCTCAATGCCCCGAATACTGTCCAAGGGAT
CGGAGAAAATGACTTGCAGGTACTTTAAAAGCTGCCAAAGGTGATCCTCT
CCACAGCGCCACTCCGGGAAGGCGTGGCTCACGTCCAAACTGTGGGTGTA
CGGGCACACATGGGGATGAATCACATCCTGCTGGAAAATTATGCTCGGAA
GACTTTTGTCGTCGGGAAAACGATCTGGGAGCAAAATTGTGAATCGAAAA
ACACTTTCCGCATACAAGCCCTGTCGGCCAAAGAAGACTCCAAACCACTG
CAAGGAGTTAGCATAGCTGGGTATCACATATATCCCACTCAACTTCTCCG
ACTCAATCATTTTGTATTCGGCCAGAATTTTATACTCCTGCTGTATGGTT
GTGATCAGCAACTTGTCATCTTTCTTATGCGCATCCAAATCGAGAGTCAT
GTCGACTGATAACT
BO05881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PB | 735 | cbx-RB | 1..732 | 750..19 | 3660 | 100 | Minus |
CG10536-PA | 645 | cbx-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..825 | 750..19 | 3660 | 100 | Minus |
cbx-RA | 1036 | CG10536-RA | 253..953 | 719..19 | 3505 | 100 | Minus |
cbx-RC | 766 | CG10536-RC | 72..456 | 723..321 | 1735 | 95.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864593..9865070 | 19..496 | 2390 | 100 | Plus |
2R | 25286936 | 2R | 9865124..9865227 | 496..599 | 520 | 100 | Plus |
2R | 25286936 | 2R | 9865424..9865509 | 665..750 | 430 | 100 | Plus |
2R | 25286936 | 2R | 9865290..9865354 | 600..664 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:42:21 has no hits.
BO05881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:52 Download gff for
BO05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 1..735 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:19 Download gff for
BO05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 1..735 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:03 Download gff for
BO05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..828 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:36 Download gff for
BO05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..828 | 15..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:36 Download gff for
BO05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864589..9865069 | 15..495 | 99 | <- | Plus |
2R | 9865124..9865227 | 496..599 | 100 | <- | Plus |
2R | 9865290..9865354 | 600..664 | 100 | <- | Plus |
2R | 9865424..9865509 | 665..750 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:03 Download gff for
BO05881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752094..5752574 | 15..495 | 99 | <- | Plus |
arm_2R | 5752629..5752732 | 496..599 | 100 | <- | Plus |
arm_2R | 5752795..5752859 | 600..664 | 100 | <- | Plus |
arm_2R | 5752929..5753014 | 665..750 | 100 | | Plus |
BO05881.5prime Sequence
727 bp (708 high quality bases) assembled on 2005-11-29
> BO05881.5prime
GAAGTTATCAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATG
ACAAGTTGCTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAA
TACAAAATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAG
CTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCT
TGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTT
CCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCA
TCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCC
CGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTG
CAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGA
TAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGG
AGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATA
TTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTT
CCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAA
GCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACT
GGTCTGTCATGGGTTAAGGAGGGCGAG
BO05881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10536-PB | 735 | cbx-RB | 1..711 | 17..727 | 3555 | 100 | Plus |
CG10536-PA | 645 | cbx-RA | 1..621 | 107..727 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..804 | 17..727 | 3555 | 100 | Plus |
cbx-RA | 1036 | CG10536-RA | 253..932 | 48..727 | 3400 | 100 | Plus |
cbx-RC | 766 | CG10536-RC | 72..456 | 44..446 | 1735 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864614..9865070 | 727..271 | 2285 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 271..168 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865424..9865509 | 102..17 | 430 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865354 | 167..103 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:25:20 has no hits.
BO05881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:53 Download gff for
BO05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-PB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:20 Download gff for
BO05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10536-PB | 1..711 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:13 Download gff for
BO05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..804 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:23 Download gff for
BO05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..804 | 17..727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:23 Download gff for
BO05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864614..9865069 | 272..727 | 100 | <- | Minus |
2R | 9865124..9865227 | 168..271 | 100 | <- | Minus |
2R | 9865290..9865354 | 103..167 | 100 | <- | Minus |
2R | 9865424..9865509 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:13 Download gff for
BO05881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752119..5752574 | 272..727 | 100 | <- | Minus |
arm_2R | 5752629..5752732 | 168..271 | 100 | <- | Minus |
arm_2R | 5752795..5752859 | 103..167 | 100 | <- | Minus |
arm_2R | 5752929..5753014 | 17..102 | 100 | | Minus |
BO05881.complete Sequence
766 bp (766 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ638631
> BO05881.complete
GAAGTTATCAGTCGACATGACTCTCGATTTGGATGCGCATAAGAAAGATG
ACAAGTTGCTGATCACAACCATACAGCAGGAGTATAAAATTCTGGCCGAA
TACAAAATGATTGAGTCGGAGAAGTTGAGTGGGATATATGTGATACCCAG
CTATGCTAACTCCTTGCAGTGGTTTGGAGTCTTCTTTGGCCGACAGGGCT
TGTATGCGGAAAGTGTTTTTCGATTCACAATTTTGCTCCCAGATCGTTTT
CCCGACGACAAAAGTCTTCCGAGCATAATTTTCCAGCAGGATGTGATTCA
TCCCCATGTGTGCCCGTACACCCACAGTTTGGACGTGAGCCACGCCTTCC
CGGAGTGGCGCTGTGGAGAGGATCACCTTTGGCAGCTTTTAAAGTACCTG
CAAGTCATTTTCTCCGATCCCTTGGACAGTATTCGGGGCATTGAGGTAGA
TAAGCTCAAAAACAGCGAGGCTGCGGAGCTGCTGATGAATAACAAGGAGG
AGTATGTTGCTCGCGTACAGGAAAATATCAAGGAGAGCAAGGAGCATATA
TTTGACACCCCACCCACCGAAGATCCGCACTACATAGTATTCGAGAAGTT
CCAGCAGGACGTGCACGGGCCCGTTCTGGAGCGCATCAAGGCCGGAAGAA
GCAAGCTGACGGAGCCTTCAGCGCAACAAGCAAATGGTGGACATGCAACT
GGTCTGTCATGGGTTAAGGAGGGCGAGTTTAAGCCACTTAGCATTGAGGC
AAGCTTTCTAGACCAT
BO05881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 735 | CG10536-PB | 1..732 | 17..748 | 3660 | 100 | Plus |
cbx-RA | 645 | CG10536-PA | 1..642 | 107..748 | 3210 | 100 | Plus |
cbx-RC | 552 | CG10536-PC | 1..322 | 107..446 | 1395 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-RB | 908 | CG10536-RB | 94..825 | 17..748 | 3660 | 100 | Plus |
cbx-RA | 1036 | CG10536-RA | 253..953 | 48..748 | 3505 | 100 | Plus |
cbx-RC | 766 | CG10536-RC | 72..456 | 44..446 | 1710 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9864593..9865070 | 748..271 | 2390 | 100 | Minus |
2R | 25286936 | 2R | 9865124..9865227 | 271..168 | 520 | 100 | Minus |
2R | 25286936 | 2R | 9865424..9865509 | 102..17 | 430 | 100 | Minus |
2R | 25286936 | 2R | 9865290..9865354 | 167..103 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:06:26 has no hits.
BO05881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:05 Download gff for
BO05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 1..735 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:18 Download gff for
BO05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 75..809 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:53 Download gff for
BO05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..825 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:05 Download gff for
BO05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 75..809 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:23 Download gff for
BO05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbx-RB | 94..825 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:23 Download gff for
BO05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9864591..9865069 | 272..750 | 99 | <- | Minus |
2R | 9865124..9865227 | 168..271 | 100 | <- | Minus |
2R | 9865290..9865354 | 103..167 | 100 | <- | Minus |
2R | 9865424..9865509 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:53 Download gff for
BO05881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5752096..5752574 | 272..750 | 99 | <- | Minus |
arm_2R | 5752629..5752732 | 168..271 | 100 | <- | Minus |
arm_2R | 5752795..5752859 | 103..167 | 100 | <- | Minus |
arm_2R | 5752929..5753014 | 17..102 | 100 | | Minus |
BO05881.pep Sequence
Translation from 16 to 766
> BO05881.pep
MTLDLDAHKKDDKLLITTIQQEYKILAEYKMIESEKLSGIYVIPSYANSL
QWFGVFFGRQGLYAESVFRFTILLPDRFPDDKSLPSIIFQQDVIHPHVCP
YTHSLDVSHAFPEWRCGEDHLWQLLKYLQVIFSDPLDSIRGIEVDKLKNS
EAAELLMNNKEEYVARVQENIKESKEHIFDTPPTEDPHYIVFEKFQQDVH
GPVLERIKAGRSKLTEPSAQQANGGHATGLSWVKEGEFKPLSIEASFLDH
BO05881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbx-PB | 244 | CG10536-PB | 1..244 | 1..244 | 1290 | 100 | Plus |
cbx-PA | 214 | CG10536-PA | 1..214 | 31..244 | 1139 | 100 | Plus |
cbx-PC | 183 | CG10536-PC | 1..183 | 31..244 | 937 | 85.5 | Plus |
CG16894-PA | 266 | CG16894-PA | 11..211 | 16..209 | 492 | 45.5 | Plus |