Clone Sequence Records
BO05883.3prime Sequence
938 bp (734 high quality bases) assembled on 2005-12-02
> BO05883.3prime
ATGGTCTAGAAAGCTTGCTTCCACAAGGACAACATCGCCGCAGGTCATGT
GTTGCTCCTTGGGTTCCAGTTCTTTTGTGTCCTGGGGGATCCTAGTGATG
TAGATGCCGAATCGCATGCGACCCTTCTGCAGGCGGGATATGGTGGTCAA
GGTTTCTGGCGACCGTTCGCCTGTCCTTTGGTTAATGCAGATCATGTCGC
AGCGCTGGCAGGGACCCTCCACCTGAAATTGGATTCCCCCAATGGACAGG
GCCTTGTAGGTAAGCTCCTCAAAGGCACTGCCCGTGTCGATGATGATATT
TGCCCGAAAACGATCCACAGTCTCGTCGAGGGGCTCTTCAAATTGAAGCG
ATCGCACGGAAGACTTGTTTAGCAGCAAGAACTGGGCCTGATTAACCAGA
CTTAGCTTCTGCTGATCCTTGGAAGAGTTTCTCTGGCCCGATTGTCGAAG
CAAACGGAGGCCCTCCATGCCGAGGTTTTCGCTTAACCACTGGGCAACCC
TATCGCCGCAATCCAAACCTTCCACGGGCTGTCGGCACACCTTGCTTACG
CATTTTGCTGTGTCGGCTGCCTGGTCATCCAGAGAAAGGGGCACCGAGAT
GGTGGAATTTTCTCCAAACTGCAGCTCCAATTGGTCAACCTTAATCACTG
GCCTAATTAGGCACAACTCCGTGCAGCGTTTCTGGGTCAACGCCATGCCA
TTCATGTCCACGATCATCCACTCACGGTCATATTTCAAACCTTGATCCGT
CAATGGCCAGGAGCCCGGTAATTCGATCTTAAAGGCGGCACAAGACTTTA
CCGGATATATGGCCATCTGCAATAGTTTTGGCCTCAAGAGCTGGACTCGC
TCCTTCAGCAACGGCGGCAATTGCTCCGCCTGCTCCTCGATGAACTGAAT
CCGCTGCAGCGGCTTGGTTGCCAAATAACTGGAGCGCA
BO05883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1692-PA | 2346 | mal-RA | 1424..2343 | 938..19 | 4600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mal-RB | 3209 | CG1692-RB | 2003..2922 | 938..19 | 4600 | 100 | Minus |
mal-RA | 2749 | CG1692-RA | 1543..2462 | 938..19 | 4600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20432004..20432923 | 938..19 | 4600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:59:48 has no hits.
BO05883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:56 Download gff for
BO05883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-PA | 1425..2346 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:25 Download gff for
BO05883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1692-PA | 1425..2346 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:36 Download gff for
BO05883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 1544..2472 | 8..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:30 Download gff for
BO05883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 1544..2472 | 8..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:30 Download gff for
BO05883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20432005..20432933 | 8..937 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:36 Download gff for
BO05883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20303032..20303960 | 8..937 | 99 | | Minus |
BO05883.5prime Sequence
893 bp (774 high quality bases) assembled on 2005-12-02
> BO05883.5prime
GAAGTTATCAGTCGACATGACATCATATCGGCCGGAGTTCTCCGCATCGG
AGCAGTCGCAAATAGACGCGGAATTCTCTAGATTGGCCAGCAACAAGAGT
GTTTACCTGGATCATGCGGGCACCACTCTCTATGCCGAGAGCCAGGTGAC
GGCCGCCGCGGAGCAACTGCAGCGCAATGTCATCTGCAATCCGCACACCT
GCCGCCTCACCGGCGACTTCGTCGACCAGGTGCGATTCAAAATACTGGAA
TTCTTTAACACCACCGCCGAAGATTACCATGTGATATTCACGGCGAATGC
CACCGCTGCTTTGTCCCTGGTGGCGGAAAACTTTGACTTTGGATCCTCTG
GTGAGTTTCACTTCTGCCAGGAGAACCACACCTCAGTGCTGGGAATGCGG
GAAAGGGTCCGGGAAAACGGTATATACATGCTGAGGGAGAATGAAATCTC
TGGCGGAAAGCACAAGGCGAACGGGAAAGTTCACGAGGTGTCCGGAAAAA
CAGGAAACTCCTTGCTGACCTTTTCGGCCCAATGCAACTTTAGTGGTTAC
AAAATCCCACTGGAAGTCATTGAGCAAATCCAAATCGATGGCTTGGCCAA
GCCGGGAAAAGAGCTTTGGAGCTCTTTGGGAGAGAAGAAGAAGAATATGC
ACAACGATTACTATATCTGCCTGGATGCGGCGTCTTTTGTGGCCACCAGT
CCGTTGGATCTGCAAAAGTATAGACCAGATTACGTGTGCCTTAGTTTCTA
CAAGATCTTCGGTTATCCCACGGGCGTGGGAGCCCTGCTCGTGAGTCGAC
GAGGAGCCGAGGTCTTCCAGAAGCGCCGCTTTTTTGGCGGTGGTACCCAT
CACTACGCATATCCGCATGCCATGGATTACCAGCTGAGAGAGA
BO05883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1692-PA | 2346 | mal-RA | 1..831 | 17..847 | 4155 | 100 | Plus |
CG1692-PA | 2346 | mal-RA | 836..877 | 852..893 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mal-RB | 3209 | CG1692-RB | 578..1456 | 15..893 | 4350 | 99.8 | Plus |
mal-RA | 2749 | CG1692-RA | 118..996 | 15..893 | 4350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20430744..20431396 | 241..893 | 3205 | 99.4 | Plus |
X | 23542271 | X | 20430398..20430548 | 90..240 | 755 | 100 | Plus |
X | 23542271 | X | 20430252..20430327 | 15..90 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:05:51 has no hits.
BO05883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:57 Download gff for
BO05883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:27 Download gff for
BO05883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1692-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:03 Download gff for
BO05883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 113..995 | 8..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:32 Download gff for
BO05883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 113..995 | 8..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:32 Download gff for
BO05883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20430247..20430326 | 8..89 | 95 | -> | Plus |
X | 20430398..20430548 | 90..240 | 100 | -> | Plus |
X | 20430744..20431395 | 241..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:03 Download gff for
BO05883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20301274..20301353 | 8..89 | 95 | -> | Plus |
arm_X | 20301425..20301575 | 90..240 | 100 | -> | Plus |
arm_X | 20301771..20302422 | 241..892 | 99 | | Plus |
BO05883.complete Sequence
2377 bp assembled on 2008-08-14
GenBank Submission: FJ630187
> BO05883.complete
GAAGTTATCAGTCGACATGACATCATATCGGCCGGAGTTCTCCGCATCGG
AGCAGTCGCAAATAGACGCGGAATTCTCTAGATTGGCCAGCAACAAGAGT
GTTTACCTGGATCATGCGGGCACCACTCTCTATGCCGAGAGCCAGGTGAC
GGCCGCCGCGGAGCAACTGCAGCGCAATGTCATCTGCAATCCGCACACCT
GCCGCCTCACCGGCGACTTCGTCGACCAGGTGCGATTCAAAATACTGGAA
TTCTTTAACACCACCGCCGAAGATTACCATGTGATATTCACGGCGAATGC
CACCGCTGCTTTGTCCCTGGTGGCGGAAAACTTTGACTTTGGATCCTCTG
GTGAGTTTCACTTCTGCCAGGAGAACCACACCTCAGTGCTGGGAATGCGG
GAAAGGGTCCGGGAAAACGGTATATACATGCTGAGGGAGAATGAAATCTC
TGGCGGAAAGCACAAGGCGAACGGGAAAGTTCACGAGGTGTCCGGAAAAA
CAGGAAACTCCTTGCTGACCTTTTCGGCCCAATGCAACTTTAGTGGTTAC
AAAATCCCACTGGAAGTCATTGAGCAAATCCAAATCGATGGCTTGGCCAA
GCCGGGAAAAGAGCTTTGGAGCTCTTTGGGAGAGAAGAAGAAGAATATGC
ACAACGATTACTATATCTGCCTGGATGCGGCGTCTTTTGTGGCCACCAGT
CCGTTGGATCTGCAAAAGTATAGACCAGATTACGTGTGCCTTAGTTTCTA
CAAGATCTTCGGTTATCCCACGGGCGTGGGAGCCCTGCTCGTGAGTCGAC
GAGGAGCCGAGGTCTTCCAGAAGCGCCGCTTTTTTGGCGGTGGTACCATC
AACTACGCATATCCGCATGCCATGGATTACCAGCTGAGAGAGACCTTCCA
TCAGCGCTACGAGGACGGCACCCTGCCATTCCTCTCCATTGTCGGGTTGC
TCGAGGGCTTTCGAACGCTGGAGAGATTGGTGCCCAGAACGGACGAGTTT
AGCACCATGGAGAGGATTTCCAGACACGTCTTTGGTCTGGCCAAGTATCT
GGAGGATCAGCTGCGCCAGCTGCATCATCCCAATGGTGAGCCCCTCGTGA
AGCTGTACAATAAAGTGGGCTACCAAGACAAATCCCGGCAGGGTGGCATC
GTGGCCTTTAACGTGCGCACTGAATCGGGTTCGTTTGTGGGATTCGGCGA
GATCGCCTGTGTGGCTGCTCTGCACGGAATACTCCTGCGGACTGGTTGCT
TCTGCAACATCGGAGCCTGCCAATATTACCTAGGCCTCGATGAAGATGCT
TTGGATGCGATTTACAAGCGAGCAGGTCGCATATGCGGCGACTACTTTGA
TCTGATCGATGGACAGCCGACGGGAGCGGTACGGGTATCTTTTGGCTATA
TGACAACTATTCAGGACGTAGACAAGCTGCTCCAGATGCTGCGCTCCAGT
TATTTGGCAACCAAGCCGCTGCAGCGGATTCAGTTCATCGAGGAGCAGGC
GGAGCAATTGCCGCCGTTGCTGAAGGAGCGAGTCCAGCTCTTGAGGCCAA
AACTATTGCAGATGGCCATATATCCGGTAAAGTCTTGTGCCGCCTTTAAG
ATCGAATTACCGGGCTCCTGGCCATTGACGGATCAAGGTTTGAAATATGA
CCGTGAGTGGATGATCGTGGACATGAATGGCATGGCGTTGACCCAGAAAC
GCTGCACGGAGTTGTGCCTAATTAGGCCAGTGATTAAGGTTGACCAATTG
GAGCTGCAGTTTGGAGAAAATTCCACCATCTCGGTGCCCCTTTCTCTGGA
TGACCAGGCAGCCGACACAGCAAAATGCGTAAGCAAGGTGTGCCGACAGC
CCGTGGAAGGTTTGGATTGCGGCGATAGGGTTGCCCAGTGGTTAAGCGAA
AACCTCGGCATGGAGGGCCTCCGTTTGCTTCGACAATCGGGCCAGAGAAA
CTCTTCCAAGGATCAGCAGAAGCTAAGTCTGGTTAATCAGGCCCAGTTCT
TGCTGCTAAACAAGTCTTCCGTGCGATCGCTTCAATTTGAAGAGCCCCTC
GACGAGACTGTGGATCGTTTTCGGGCAAATATCATCATCGACACGGGCAG
TGCCTTTGAGGAGCTTACCTACAAGGCCCTGTCCATTGGGGGAATCCAAT
TTCAGGTGGAGGGTCCCTGCCAGCGCTGCGACATGATCTGCATTAACCAA
AGGACAGGCGAACGGTCGCCAGAAACCTTGACCACCATATCCCGCCTGCA
GAAGGGTCGCATGCGATTCGGCATCTACATCACTAGGATCCCCCAGGACA
CAAAAGAACTGGAACCCAAGGAGCAACACATGACCTGCGGCGATGTTGTC
CTTGTGGAAGCAAGCTTTCTAGACCAT
BO05883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mal-RB | 2346 | CG1692-PB | 1..2343 | 17..2359 | 11715 | 100 | Plus |
mal-RA | 2346 | CG1692-PA | 1..2343 | 17..2359 | 11715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mal-RB | 3209 | CG1692-RB | 578..2922 | 15..2359 | 11725 | 100 | Plus |
mal-RA | 2749 | CG1692-RA | 118..2462 | 15..2359 | 11725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20431580..20432923 | 1016..2359 | 6705 | 99.9 | Plus |
X | 23542271 | X | 20430744..20431526 | 241..1023 | 3915 | 100 | Plus |
X | 23542271 | X | 20430398..20430548 | 90..240 | 755 | 100 | Plus |
X | 23542271 | X | 20430252..20430327 | 15..90 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:18 has no hits.
BO05883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:24 Download gff for
BO05883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 567..2926 | 8..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:50 Download gff for
BO05883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 120..2462 | 17..2361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:03 Download gff for
BO05883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 574..2916 | 17..2361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:14 Download gff for
BO05883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mal-RA | 120..2462 | 17..2361 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:14 Download gff for
BO05883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20431588..20432923 | 1024..2361 | 99 | | Plus |
X | 20430254..20430326 | 17..89 | 100 | -> | Plus |
X | 20430398..20430548 | 90..240 | 100 | -> | Plus |
X | 20430744..20431526 | 241..1023 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:50 Download gff for
BO05883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20301281..20301353 | 17..89 | 100 | -> | Plus |
arm_X | 20301425..20301575 | 90..240 | 100 | -> | Plus |
arm_X | 20301771..20302553 | 241..1023 | 100 | -> | Plus |
arm_X | 20302615..20303950 | 1024..2361 | 99 | | Plus |
BO05883.pep Sequence
Translation from 16 to 2377
> BO05883.pep
MTSYRPEFSASEQSQIDAEFSRLASNKSVYLDHAGTTLYAESQVTAAAEQ
LQRNVICNPHTCRLTGDFVDQVRFKILEFFNTTAEDYHVIFTANATAALS
LVAENFDFGSSGEFHFCQENHTSVLGMRERVRENGIYMLRENEISGGKHK
ANGKVHEVSGKTGNSLLTFSAQCNFSGYKIPLEVIEQIQIDGLAKPGKEL
WSSLGEKKKNMHNDYYICLDAASFVATSPLDLQKYRPDYVCLSFYKIFGY
PTGVGALLVSRRGAEVFQKRRFFGGGTINYAYPHAMDYQLRETFHQRYED
GTLPFLSIVGLLEGFRTLERLVPRTDEFSTMERISRHVFGLAKYLEDQLR
QLHHPNGEPLVKLYNKVGYQDKSRQGGIVAFNVRTESGSFVGFGEIACVA
ALHGILLRTGCFCNIGACQYYLGLDEDALDAIYKRAGRICGDYFDLIDGQ
PTGAVRVSFGYMTTIQDVDKLLQMLRSSYLATKPLQRIQFIEEQAEQLPP
LLKERVQLLRPKLLQMAIYPVKSCAAFKIELPGSWPLTDQGLKYDREWMI
VDMNGMALTQKRCTELCLIRPVIKVDQLELQFGENSTISVPLSLDDQAAD
TAKCVSKVCRQPVEGLDCGDRVAQWLSENLGMEGLRLLRQSGQRNSSKDQ
QKLSLVNQAQFLLLNKSSVRSLQFEEPLDETVDRFRANIIIDTGSAFEEL
TYKALSIGGIQFQVEGPCQRCDMICINQRTGERSPETLTTISRLQKGRMR
FGIYITRIPQDTKELEPKEQHMTCGDVVLVEASFLDH
BO05883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mal-PB | 781 | CG1692-PB | 1..781 | 1..781 | 4068 | 100 | Plus |
mal-PA | 781 | CG1692-PA | 1..781 | 1..781 | 4068 | 100 | Plus |