Clone BO05883 Report

Search the DGRC for BO05883

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptmal-RA
Protein status:BO05883.pep: Imported from assembly
Sequenced Size:2377

Clone Sequence Records

BO05883.3prime Sequence

938 bp (734 high quality bases) assembled on 2005-12-02

> BO05883.3prime
ATGGTCTAGAAAGCTTGCTTCCACAAGGACAACATCGCCGCAGGTCATGT
GTTGCTCCTTGGGTTCCAGTTCTTTTGTGTCCTGGGGGATCCTAGTGATG
TAGATGCCGAATCGCATGCGACCCTTCTGCAGGCGGGATATGGTGGTCAA
GGTTTCTGGCGACCGTTCGCCTGTCCTTTGGTTAATGCAGATCATGTCGC
AGCGCTGGCAGGGACCCTCCACCTGAAATTGGATTCCCCCAATGGACAGG
GCCTTGTAGGTAAGCTCCTCAAAGGCACTGCCCGTGTCGATGATGATATT
TGCCCGAAAACGATCCACAGTCTCGTCGAGGGGCTCTTCAAATTGAAGCG
ATCGCACGGAAGACTTGTTTAGCAGCAAGAACTGGGCCTGATTAACCAGA
CTTAGCTTCTGCTGATCCTTGGAAGAGTTTCTCTGGCCCGATTGTCGAAG
CAAACGGAGGCCCTCCATGCCGAGGTTTTCGCTTAACCACTGGGCAACCC
TATCGCCGCAATCCAAACCTTCCACGGGCTGTCGGCACACCTTGCTTACG
CATTTTGCTGTGTCGGCTGCCTGGTCATCCAGAGAAAGGGGCACCGAGAT
GGTGGAATTTTCTCCAAACTGCAGCTCCAATTGGTCAACCTTAATCACTG
GCCTAATTAGGCACAACTCCGTGCAGCGTTTCTGGGTCAACGCCATGCCA
TTCATGTCCACGATCATCCACTCACGGTCATATTTCAAACCTTGATCCGT
CAATGGCCAGGAGCCCGGTAATTCGATCTTAAAGGCGGCACAAGACTTTA
CCGGATATATGGCCATCTGCAATAGTTTTGGCCTCAAGAGCTGGACTCGC
TCCTTCAGCAACGGCGGCAATTGCTCCGCCTGCTCCTCGATGAACTGAAT
CCGCTGCAGCGGCTTGGTTGCCAAATAACTGGAGCGCA

BO05883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1692-PA 2346 mal-RA 1424..2343 938..19 4600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
mal-RB 3209 CG1692-RB 2003..2922 938..19 4600 100 Minus
mal-RA 2749 CG1692-RA 1543..2462 938..19 4600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20432004..20432923 938..19 4600 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:59:48 has no hits.

BO05883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:56 Download gff for BO05883.3prime
Subject Subject Range Query Range Percent Splice Strand
mal-PA 1425..2346 15..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:25 Download gff for BO05883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1692-PA 1425..2346 15..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:36 Download gff for BO05883.3prime
Subject Subject Range Query Range Percent Splice Strand
mal-RA 1544..2472 8..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:30 Download gff for BO05883.3prime
Subject Subject Range Query Range Percent Splice Strand
mal-RA 1544..2472 8..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:30 Download gff for BO05883.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20432005..20432933 8..937 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:36 Download gff for BO05883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20303032..20303960 8..937 99   Minus

BO05883.5prime Sequence

893 bp (774 high quality bases) assembled on 2005-12-02

> BO05883.5prime
GAAGTTATCAGTCGACATGACATCATATCGGCCGGAGTTCTCCGCATCGG
AGCAGTCGCAAATAGACGCGGAATTCTCTAGATTGGCCAGCAACAAGAGT
GTTTACCTGGATCATGCGGGCACCACTCTCTATGCCGAGAGCCAGGTGAC
GGCCGCCGCGGAGCAACTGCAGCGCAATGTCATCTGCAATCCGCACACCT
GCCGCCTCACCGGCGACTTCGTCGACCAGGTGCGATTCAAAATACTGGAA
TTCTTTAACACCACCGCCGAAGATTACCATGTGATATTCACGGCGAATGC
CACCGCTGCTTTGTCCCTGGTGGCGGAAAACTTTGACTTTGGATCCTCTG
GTGAGTTTCACTTCTGCCAGGAGAACCACACCTCAGTGCTGGGAATGCGG
GAAAGGGTCCGGGAAAACGGTATATACATGCTGAGGGAGAATGAAATCTC
TGGCGGAAAGCACAAGGCGAACGGGAAAGTTCACGAGGTGTCCGGAAAAA
CAGGAAACTCCTTGCTGACCTTTTCGGCCCAATGCAACTTTAGTGGTTAC
AAAATCCCACTGGAAGTCATTGAGCAAATCCAAATCGATGGCTTGGCCAA
GCCGGGAAAAGAGCTTTGGAGCTCTTTGGGAGAGAAGAAGAAGAATATGC
ACAACGATTACTATATCTGCCTGGATGCGGCGTCTTTTGTGGCCACCAGT
CCGTTGGATCTGCAAAAGTATAGACCAGATTACGTGTGCCTTAGTTTCTA
CAAGATCTTCGGTTATCCCACGGGCGTGGGAGCCCTGCTCGTGAGTCGAC
GAGGAGCCGAGGTCTTCCAGAAGCGCCGCTTTTTTGGCGGTGGTACCCAT
CACTACGCATATCCGCATGCCATGGATTACCAGCTGAGAGAGA

BO05883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1692-PA 2346 mal-RA 1..831 17..847 4155 100 Plus
CG1692-PA 2346 mal-RA 836..877 852..893 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
mal-RB 3209 CG1692-RB 578..1456 15..893 4350 99.8 Plus
mal-RA 2749 CG1692-RA 118..996 15..893 4350 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20430744..20431396 241..893 3205 99.4 Plus
X 23542271 X 20430398..20430548 90..240 755 100 Plus
X 23542271 X 20430252..20430327 15..90 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:05:51 has no hits.

BO05883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:33:57 Download gff for BO05883.5prime
Subject Subject Range Query Range Percent Splice Strand
mal-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:27 Download gff for BO05883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1692-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:03 Download gff for BO05883.5prime
Subject Subject Range Query Range Percent Splice Strand
mal-RA 113..995 8..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:32 Download gff for BO05883.5prime
Subject Subject Range Query Range Percent Splice Strand
mal-RA 113..995 8..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:32 Download gff for BO05883.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20430247..20430326 8..89 95 -> Plus
X 20430398..20430548 90..240 100 -> Plus
X 20430744..20431395 241..892 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:03 Download gff for BO05883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20301274..20301353 8..89 95 -> Plus
arm_X 20301425..20301575 90..240 100 -> Plus
arm_X 20301771..20302422 241..892 99   Plus

BO05883.complete Sequence

2377 bp assembled on 2008-08-14

GenBank Submission: FJ630187

> BO05883.complete
GAAGTTATCAGTCGACATGACATCATATCGGCCGGAGTTCTCCGCATCGG
AGCAGTCGCAAATAGACGCGGAATTCTCTAGATTGGCCAGCAACAAGAGT
GTTTACCTGGATCATGCGGGCACCACTCTCTATGCCGAGAGCCAGGTGAC
GGCCGCCGCGGAGCAACTGCAGCGCAATGTCATCTGCAATCCGCACACCT
GCCGCCTCACCGGCGACTTCGTCGACCAGGTGCGATTCAAAATACTGGAA
TTCTTTAACACCACCGCCGAAGATTACCATGTGATATTCACGGCGAATGC
CACCGCTGCTTTGTCCCTGGTGGCGGAAAACTTTGACTTTGGATCCTCTG
GTGAGTTTCACTTCTGCCAGGAGAACCACACCTCAGTGCTGGGAATGCGG
GAAAGGGTCCGGGAAAACGGTATATACATGCTGAGGGAGAATGAAATCTC
TGGCGGAAAGCACAAGGCGAACGGGAAAGTTCACGAGGTGTCCGGAAAAA
CAGGAAACTCCTTGCTGACCTTTTCGGCCCAATGCAACTTTAGTGGTTAC
AAAATCCCACTGGAAGTCATTGAGCAAATCCAAATCGATGGCTTGGCCAA
GCCGGGAAAAGAGCTTTGGAGCTCTTTGGGAGAGAAGAAGAAGAATATGC
ACAACGATTACTATATCTGCCTGGATGCGGCGTCTTTTGTGGCCACCAGT
CCGTTGGATCTGCAAAAGTATAGACCAGATTACGTGTGCCTTAGTTTCTA
CAAGATCTTCGGTTATCCCACGGGCGTGGGAGCCCTGCTCGTGAGTCGAC
GAGGAGCCGAGGTCTTCCAGAAGCGCCGCTTTTTTGGCGGTGGTACCATC
AACTACGCATATCCGCATGCCATGGATTACCAGCTGAGAGAGACCTTCCA
TCAGCGCTACGAGGACGGCACCCTGCCATTCCTCTCCATTGTCGGGTTGC
TCGAGGGCTTTCGAACGCTGGAGAGATTGGTGCCCAGAACGGACGAGTTT
AGCACCATGGAGAGGATTTCCAGACACGTCTTTGGTCTGGCCAAGTATCT
GGAGGATCAGCTGCGCCAGCTGCATCATCCCAATGGTGAGCCCCTCGTGA
AGCTGTACAATAAAGTGGGCTACCAAGACAAATCCCGGCAGGGTGGCATC
GTGGCCTTTAACGTGCGCACTGAATCGGGTTCGTTTGTGGGATTCGGCGA
GATCGCCTGTGTGGCTGCTCTGCACGGAATACTCCTGCGGACTGGTTGCT
TCTGCAACATCGGAGCCTGCCAATATTACCTAGGCCTCGATGAAGATGCT
TTGGATGCGATTTACAAGCGAGCAGGTCGCATATGCGGCGACTACTTTGA
TCTGATCGATGGACAGCCGACGGGAGCGGTACGGGTATCTTTTGGCTATA
TGACAACTATTCAGGACGTAGACAAGCTGCTCCAGATGCTGCGCTCCAGT
TATTTGGCAACCAAGCCGCTGCAGCGGATTCAGTTCATCGAGGAGCAGGC
GGAGCAATTGCCGCCGTTGCTGAAGGAGCGAGTCCAGCTCTTGAGGCCAA
AACTATTGCAGATGGCCATATATCCGGTAAAGTCTTGTGCCGCCTTTAAG
ATCGAATTACCGGGCTCCTGGCCATTGACGGATCAAGGTTTGAAATATGA
CCGTGAGTGGATGATCGTGGACATGAATGGCATGGCGTTGACCCAGAAAC
GCTGCACGGAGTTGTGCCTAATTAGGCCAGTGATTAAGGTTGACCAATTG
GAGCTGCAGTTTGGAGAAAATTCCACCATCTCGGTGCCCCTTTCTCTGGA
TGACCAGGCAGCCGACACAGCAAAATGCGTAAGCAAGGTGTGCCGACAGC
CCGTGGAAGGTTTGGATTGCGGCGATAGGGTTGCCCAGTGGTTAAGCGAA
AACCTCGGCATGGAGGGCCTCCGTTTGCTTCGACAATCGGGCCAGAGAAA
CTCTTCCAAGGATCAGCAGAAGCTAAGTCTGGTTAATCAGGCCCAGTTCT
TGCTGCTAAACAAGTCTTCCGTGCGATCGCTTCAATTTGAAGAGCCCCTC
GACGAGACTGTGGATCGTTTTCGGGCAAATATCATCATCGACACGGGCAG
TGCCTTTGAGGAGCTTACCTACAAGGCCCTGTCCATTGGGGGAATCCAAT
TTCAGGTGGAGGGTCCCTGCCAGCGCTGCGACATGATCTGCATTAACCAA
AGGACAGGCGAACGGTCGCCAGAAACCTTGACCACCATATCCCGCCTGCA
GAAGGGTCGCATGCGATTCGGCATCTACATCACTAGGATCCCCCAGGACA
CAAAAGAACTGGAACCCAAGGAGCAACACATGACCTGCGGCGATGTTGTC
CTTGTGGAAGCAAGCTTTCTAGACCAT

BO05883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
mal-RB 2346 CG1692-PB 1..2343 17..2359 11715 100 Plus
mal-RA 2346 CG1692-PA 1..2343 17..2359 11715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
mal-RB 3209 CG1692-RB 578..2922 15..2359 11725 100 Plus
mal-RA 2749 CG1692-RA 118..2462 15..2359 11725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20431580..20432923 1016..2359 6705 99.9 Plus
X 23542271 X 20430744..20431526 241..1023 3915 100 Plus
X 23542271 X 20430398..20430548 90..240 755 100 Plus
X 23542271 X 20430252..20430327 15..90 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:38:18 has no hits.

BO05883.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:24 Download gff for BO05883.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 567..2926 8..2370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:50 Download gff for BO05883.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 120..2462 17..2361 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:03 Download gff for BO05883.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 574..2916 17..2361 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:14 Download gff for BO05883.complete
Subject Subject Range Query Range Percent Splice Strand
mal-RA 120..2462 17..2361 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:14 Download gff for BO05883.complete
Subject Subject Range Query Range Percent Splice Strand
X 20431588..20432923 1024..2361 99   Plus
X 20430254..20430326 17..89 100 -> Plus
X 20430398..20430548 90..240 100 -> Plus
X 20430744..20431526 241..1023 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:50 Download gff for BO05883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20301281..20301353 17..89 100 -> Plus
arm_X 20301425..20301575 90..240 100 -> Plus
arm_X 20301771..20302553 241..1023 100 -> Plus
arm_X 20302615..20303950 1024..2361 99   Plus

BO05883.pep Sequence

Translation from 16 to 2377

> BO05883.pep
MTSYRPEFSASEQSQIDAEFSRLASNKSVYLDHAGTTLYAESQVTAAAEQ
LQRNVICNPHTCRLTGDFVDQVRFKILEFFNTTAEDYHVIFTANATAALS
LVAENFDFGSSGEFHFCQENHTSVLGMRERVRENGIYMLRENEISGGKHK
ANGKVHEVSGKTGNSLLTFSAQCNFSGYKIPLEVIEQIQIDGLAKPGKEL
WSSLGEKKKNMHNDYYICLDAASFVATSPLDLQKYRPDYVCLSFYKIFGY
PTGVGALLVSRRGAEVFQKRRFFGGGTINYAYPHAMDYQLRETFHQRYED
GTLPFLSIVGLLEGFRTLERLVPRTDEFSTMERISRHVFGLAKYLEDQLR
QLHHPNGEPLVKLYNKVGYQDKSRQGGIVAFNVRTESGSFVGFGEIACVA
ALHGILLRTGCFCNIGACQYYLGLDEDALDAIYKRAGRICGDYFDLIDGQ
PTGAVRVSFGYMTTIQDVDKLLQMLRSSYLATKPLQRIQFIEEQAEQLPP
LLKERVQLLRPKLLQMAIYPVKSCAAFKIELPGSWPLTDQGLKYDREWMI
VDMNGMALTQKRCTELCLIRPVIKVDQLELQFGENSTISVPLSLDDQAAD
TAKCVSKVCRQPVEGLDCGDRVAQWLSENLGMEGLRLLRQSGQRNSSKDQ
QKLSLVNQAQFLLLNKSSVRSLQFEEPLDETVDRFRANIIIDTGSAFEEL
TYKALSIGGIQFQVEGPCQRCDMICINQRTGERSPETLTTISRLQKGRMR
FGIYITRIPQDTKELEPKEQHMTCGDVVLVEASFLDH

BO05883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
mal-PB 781 CG1692-PB 1..781 1..781 4068 100 Plus
mal-PA 781 CG1692-PA 1..781 1..781 4068 100 Plus