Clone BO05886 Report

Search the DGRC for BO05886

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptPrp18-RA
Protein status:BO05886.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO05886.3prime Sequence

900 bp (757 high quality bases) assembled on 2005-12-02

> BO05886.3prime
ATGGTCTAGAAAGCTTGCTTCCCGATCCTTCTTGCTGACGTACTCCACGC
ACTTGGAGGGATCGGTGGGAAAGTACTCTTGGCACTTGGTCATCAGTCGT
TTGAGACCCTGGATGTACTTCCGTTGTGTTTCATCGTTCATTACGTGGGC
TACGTTTTTGGAGAAAATCTTTTCGCGACCCGTACGAGCGTGGATACCCA
CCATAGTGACACCAATGGGCCAAGGCGCGTTTCCGATGGCCATTTCTAGG
TAGGCATCGCTTGCTGTGATATAGTTGCGGTTGAGCAGGTGCTTGCAGAT
GTCTCGCAGACTGTCCAGAATGTCCTCTGGCAGGGTGTGATGCTTTAACT
TGCGAAACAGCGGCTTAACGTATTCCTTAGTCTGCGTGTAAATGACGCGG
GTCATTTTCACCTTTGTGGACATCTTTTCGTGCTTGCTGTAGTTGGCGAT
CTGGTCGTTCCACAGCTTGAGCAGGAAGGTGAGCAGCGTGATGATCACAT
CCATGTCGTAGTCCTTGTTGCGGCCCATATTTGCAGCCATTGTCTGTATG
CTCTCCCACGACACGGACTCGTCGAGCTCAGCGAAGTCCGACTTCTTGTC
TTCCTTGGTGGTGGGTGTGTTGGCGAACATCTCCTGCAGGTAGGCGGCGT
CCACCTGCTCCATGGCCTCCTGGAAATCGTTGCGGAAACCGCGATTTGCC
TCTGGCTGCGAAATCTCGCATTGTCGCAATCGGTCAAAGGCCTCGGGCTC
CGTCTCGCCAAATATAAGGATGGGTTCGCCGCGTTCCCTTAGCCTCCGAA
TGACCTCCGTGCGCGGCAATATGTTCTGGCCATCGGCCACAAAACTGTAC
GCGCCTTCGGTCGTTTGTCCTTTGTGCTCGACGGACTCCTGCTTTATGTA

BO05886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6011-PA 1023 Prp18-RA 167..1020 872..19 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-RA 1304 CG6011-RA 217..1098 900..19 4365 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19030174..19031055 19..900 4350 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 04:55:57 has no hits.

BO05886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:00 Download gff for BO05886.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp18-PA 140..1023 15..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:32 Download gff for BO05886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6011-PA 140..1023 15..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:32 Download gff for BO05886.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 198..1085 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:54 Download gff for BO05886.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 218..1105 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:54 Download gff for BO05886.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19030167..19031054 11..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:32 Download gff for BO05886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14855889..14856776 11..899 99   Plus

BO05886.5prime Sequence

769 bp (756 high quality bases) assembled on 2005-11-29

> BO05886.5prime
GAAGTTATCAGTCGACATGGATATTCTGAAAGCTGAAATAGCGCGAAAGC
GCAAGCTGCTGGAGCAAAGGCAGCTGGTGGACGAAAAGAAGAAGTACTTC
AGACGCGGTGACCTGAACGCCAAGAACACAGAGGAAGTGCTGCAGAAGGT
GGGCTACATAAAGCAGGAGTCCGTCGAGGCACAAGGACAAACGACCGAAG
GCGCGTACAGTTTTGTGGCCGATGGCCAGAACATATTGCCGCGCACGGAG
GTCATTCGGAGGCTAAGGGAACGCGGCGAACCCATCCTTATATTTGGCGA
GACGGAGCCCGAGGCCTTTGACCGATTGCGACAATGCGAGATTTCGCAGC
CAGAGGCAAATCGCGGTTTCCGCAACGATTTCCAGGAGGCCATGGAGCAG
GTGGACGCCGCCTACCTGCAGGAGATGTTCGCCAACACACCCACCACCAA
GGAAGACAAGAAGTCGGACTTCGCTGAGCTCGACGAGTCCGTGTCGTGGG
AGAGCATACAGACAATGGCTGCAAATATGGGCCGCAACAAGGACTACGAC
ATGGATGTGATCATCACGCTGCTCACCTTCCTGCTCAAGCTGTGGAACGA
CCAGATCGCCAACTACAGCAAGCACGAAAAGATGTCCACAAAGGTGAAAA
TGACCCGCGTCATTTACACGCAGACTAAGGAATACGTTAAGCCGCTGTTT
CGCAAGTTAAAGCATCACACCCTGCCAGAGGACATTCTGGACAGTCTGCG
AGACATCTGNCAGCACCTG

BO05886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6011-PA 1023 Prp18-RA 1..753 17..769 3721 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-RA 1304 CG6011-RA 77..831 15..769 3749 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19030441..19031195 769..15 3749 99.7 Minus
Blast to na_te.dros performed on 2015-02-13 05:58:06 has no hits.

BO05886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:01 Download gff for BO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp18-PA 1..753 17..769 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:33 Download gff for BO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6011-PA 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:00 Download gff for BO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 46..811 2..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:40 Download gff for BO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 66..831 2..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:40 Download gff for BO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19030441..19031205 2..769 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:00 Download gff for BO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14856163..14856927 2..769 99   Minus

BO05886.complete Sequence

1054 bp (1054 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630189

> BO05886.complete
GAAGTTATCAGTCGACATGGATATTCTGAAAGCTGAAATAGCGCGAAAGC
GCAAGCTGCTGGAGCAAAGGCAGCTGGTGGACGAAAAGAAGAAGTACTTC
AGACGCGGTGACCTGAACGCCAAGAACACAGAGGAAGTGCTGCAGAAGGT
GGGCTACATAAAGCAGGAGTCCGTCGAGGCACAAGGACAAACGACCGAAG
GCGCGTACAGTTTTGTGGCCGATGGCCAGAACATATTGCCGCGCACGGAG
GTCATTCGGAGGCTAAGGGAACGCGGCGAACCCATCCTTATATTTGGCGA
GACGGAGCCCGAGGCCTTTGACCGATTGCGACAATGCGAGATTTCGCAGC
CAGAGGCAAATCGCGGTTTCCGCAACGATTTCCAGGAGGCCATGGAGCAG
GTGGACGCCGCCTACCTGCAGGAGATGTTCGCCAACACACCCACCACCAA
GGAAGACAAGAAGTCGGACTTCGCTGAGCTCGACGAGTCCGTGTCGTGGG
AGAGCATACAGACAATGGCTGCAAATATGGGCCGCAACAAGGACTACGAC
ATGGATGTGATCATCACGCTGCTCACCTTCCTGCTCAAGCTGTGGAACGA
CCAGATCGCCAACTACAGCAAGCACGAAAAGATGTCCACAAAGGTGAAAA
TGACCCGCGTCATTTACACGCAGACTAAGGAATACGTTAAGCCGCTGTTT
CGCAAGTTAAAGCATCACACCCTGCCAGAGGACATTCTGGACAGTCTGCG
AGACATCTGCAAGCACCTGCTCAACCGCAACTATATCACAGCAAGCGATG
CCTACCTAGAAATGGCCATCGGAAACGCGCCTTGGCCCATTGGTGTCACT
ATGGTGGGTATCCACGCTCGTACGGGTCGCGAAAAGATTTTCTCCAAAAA
CGTAGCCCACGTAATGAACGATGAAACACAACGGAAGTACATCCAGGGTC
TCAAACGACTGATGACCAAGTGCCAAGAGTACTTTCCCACCGATCCCTCC
AAGTGCGTGGAGTACGTCAGCAAGAAGGATCGGGAAGCAAGCTTTCTAGA
CCAT

BO05886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-RA 1023 CG6011-PA 1..1020 17..1036 5100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-RA 1304 CG6011-RA 77..1098 15..1036 5110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19030174..19031195 1036..15 5110 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:04:08 has no hits.

BO05886.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:07 Download gff for BO05886.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 1..1023 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:22 Download gff for BO05886.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 46..1085 2..1044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:29 Download gff for BO05886.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 59..1078 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:08 Download gff for BO05886.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 46..1085 2..1044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:35 Download gff for BO05886.complete
Subject Subject Range Query Range Percent Splice Strand
Prp18-RA 79..1098 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:35 Download gff for BO05886.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19030172..19031193 17..1038 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:29 Download gff for BO05886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14855894..14856915 17..1038 99   Minus

BO05886.pep Sequence

Translation from 16 to 1054

> BO05886.pep
MDILKAEIARKRKLLEQRQLVDEKKKYFRRGDLNAKNTEEVLQKVGYIKQ
ESVEAQGQTTEGAYSFVADGQNILPRTEVIRRLRERGEPILIFGETEPEA
FDRLRQCEISQPEANRGFRNDFQEAMEQVDAAYLQEMFANTPTTKEDKKS
DFAELDESVSWESIQTMAANMGRNKDYDMDVIITLLTFLLKLWNDQIANY
SKHEKMSTKVKMTRVIYTQTKEYVKPLFRKLKHHTLPEDILDSLRDICKH
LLNRNYITASDAYLEMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVM
NDETQRKYIQGLKRLMTKCQEYFPTDPSKCVEYVSKKDREASFLDH

BO05886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Prp18-PA 340 CG6011-PA 1..340 1..340 1760 100 Plus