Clone Sequence Records
BO05886.3prime Sequence
900 bp (757 high quality bases) assembled on 2005-12-02
> BO05886.3prime
ATGGTCTAGAAAGCTTGCTTCCCGATCCTTCTTGCTGACGTACTCCACGC
ACTTGGAGGGATCGGTGGGAAAGTACTCTTGGCACTTGGTCATCAGTCGT
TTGAGACCCTGGATGTACTTCCGTTGTGTTTCATCGTTCATTACGTGGGC
TACGTTTTTGGAGAAAATCTTTTCGCGACCCGTACGAGCGTGGATACCCA
CCATAGTGACACCAATGGGCCAAGGCGCGTTTCCGATGGCCATTTCTAGG
TAGGCATCGCTTGCTGTGATATAGTTGCGGTTGAGCAGGTGCTTGCAGAT
GTCTCGCAGACTGTCCAGAATGTCCTCTGGCAGGGTGTGATGCTTTAACT
TGCGAAACAGCGGCTTAACGTATTCCTTAGTCTGCGTGTAAATGACGCGG
GTCATTTTCACCTTTGTGGACATCTTTTCGTGCTTGCTGTAGTTGGCGAT
CTGGTCGTTCCACAGCTTGAGCAGGAAGGTGAGCAGCGTGATGATCACAT
CCATGTCGTAGTCCTTGTTGCGGCCCATATTTGCAGCCATTGTCTGTATG
CTCTCCCACGACACGGACTCGTCGAGCTCAGCGAAGTCCGACTTCTTGTC
TTCCTTGGTGGTGGGTGTGTTGGCGAACATCTCCTGCAGGTAGGCGGCGT
CCACCTGCTCCATGGCCTCCTGGAAATCGTTGCGGAAACCGCGATTTGCC
TCTGGCTGCGAAATCTCGCATTGTCGCAATCGGTCAAAGGCCTCGGGCTC
CGTCTCGCCAAATATAAGGATGGGTTCGCCGCGTTCCCTTAGCCTCCGAA
TGACCTCCGTGCGCGGCAATATGTTCTGGCCATCGGCCACAAAACTGTAC
GCGCCTTCGGTCGTTTGTCCTTTGTGCTCGACGGACTCCTGCTTTATGTA
BO05886.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6011-PA | 1023 | Prp18-RA | 167..1020 | 872..19 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp18-RA | 1304 | CG6011-RA | 217..1098 | 900..19 | 4365 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19030174..19031055 | 19..900 | 4350 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:55:57 has no hits.
BO05886.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:00 Download gff for
BO05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-PA | 140..1023 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:32 Download gff for
BO05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6011-PA | 140..1023 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:32 Download gff for
BO05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 198..1085 | 11..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:45:54 Download gff for
BO05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 218..1105 | 11..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:45:54 Download gff for
BO05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19030167..19031054 | 11..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:32 Download gff for
BO05886.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14855889..14856776 | 11..899 | 99 | | Plus |
BO05886.5prime Sequence
769 bp (756 high quality bases) assembled on 2005-11-29
> BO05886.5prime
GAAGTTATCAGTCGACATGGATATTCTGAAAGCTGAAATAGCGCGAAAGC
GCAAGCTGCTGGAGCAAAGGCAGCTGGTGGACGAAAAGAAGAAGTACTTC
AGACGCGGTGACCTGAACGCCAAGAACACAGAGGAAGTGCTGCAGAAGGT
GGGCTACATAAAGCAGGAGTCCGTCGAGGCACAAGGACAAACGACCGAAG
GCGCGTACAGTTTTGTGGCCGATGGCCAGAACATATTGCCGCGCACGGAG
GTCATTCGGAGGCTAAGGGAACGCGGCGAACCCATCCTTATATTTGGCGA
GACGGAGCCCGAGGCCTTTGACCGATTGCGACAATGCGAGATTTCGCAGC
CAGAGGCAAATCGCGGTTTCCGCAACGATTTCCAGGAGGCCATGGAGCAG
GTGGACGCCGCCTACCTGCAGGAGATGTTCGCCAACACACCCACCACCAA
GGAAGACAAGAAGTCGGACTTCGCTGAGCTCGACGAGTCCGTGTCGTGGG
AGAGCATACAGACAATGGCTGCAAATATGGGCCGCAACAAGGACTACGAC
ATGGATGTGATCATCACGCTGCTCACCTTCCTGCTCAAGCTGTGGAACGA
CCAGATCGCCAACTACAGCAAGCACGAAAAGATGTCCACAAAGGTGAAAA
TGACCCGCGTCATTTACACGCAGACTAAGGAATACGTTAAGCCGCTGTTT
CGCAAGTTAAAGCATCACACCCTGCCAGAGGACATTCTGGACAGTCTGCG
AGACATCTGNCAGCACCTG
BO05886.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6011-PA | 1023 | Prp18-RA | 1..753 | 17..769 | 3721 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp18-RA | 1304 | CG6011-RA | 77..831 | 15..769 | 3749 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19030441..19031195 | 769..15 | 3749 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:58:06 has no hits.
BO05886.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:01 Download gff for
BO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:33 Download gff for
BO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6011-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:00 Download gff for
BO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 46..811 | 2..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:40 Download gff for
BO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 66..831 | 2..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:40 Download gff for
BO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19030441..19031205 | 2..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:00 Download gff for
BO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14856163..14856927 | 2..769 | 99 | | Minus |
BO05886.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630189
> BO05886.complete
GAAGTTATCAGTCGACATGGATATTCTGAAAGCTGAAATAGCGCGAAAGC
GCAAGCTGCTGGAGCAAAGGCAGCTGGTGGACGAAAAGAAGAAGTACTTC
AGACGCGGTGACCTGAACGCCAAGAACACAGAGGAAGTGCTGCAGAAGGT
GGGCTACATAAAGCAGGAGTCCGTCGAGGCACAAGGACAAACGACCGAAG
GCGCGTACAGTTTTGTGGCCGATGGCCAGAACATATTGCCGCGCACGGAG
GTCATTCGGAGGCTAAGGGAACGCGGCGAACCCATCCTTATATTTGGCGA
GACGGAGCCCGAGGCCTTTGACCGATTGCGACAATGCGAGATTTCGCAGC
CAGAGGCAAATCGCGGTTTCCGCAACGATTTCCAGGAGGCCATGGAGCAG
GTGGACGCCGCCTACCTGCAGGAGATGTTCGCCAACACACCCACCACCAA
GGAAGACAAGAAGTCGGACTTCGCTGAGCTCGACGAGTCCGTGTCGTGGG
AGAGCATACAGACAATGGCTGCAAATATGGGCCGCAACAAGGACTACGAC
ATGGATGTGATCATCACGCTGCTCACCTTCCTGCTCAAGCTGTGGAACGA
CCAGATCGCCAACTACAGCAAGCACGAAAAGATGTCCACAAAGGTGAAAA
TGACCCGCGTCATTTACACGCAGACTAAGGAATACGTTAAGCCGCTGTTT
CGCAAGTTAAAGCATCACACCCTGCCAGAGGACATTCTGGACAGTCTGCG
AGACATCTGCAAGCACCTGCTCAACCGCAACTATATCACAGCAAGCGATG
CCTACCTAGAAATGGCCATCGGAAACGCGCCTTGGCCCATTGGTGTCACT
ATGGTGGGTATCCACGCTCGTACGGGTCGCGAAAAGATTTTCTCCAAAAA
CGTAGCCCACGTAATGAACGATGAAACACAACGGAAGTACATCCAGGGTC
TCAAACGACTGATGACCAAGTGCCAAGAGTACTTTCCCACCGATCCCTCC
AAGTGCGTGGAGTACGTCAGCAAGAAGGATCGGGAAGCAAGCTTTCTAGA
CCAT
BO05886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp18-RA | 1023 | CG6011-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp18-RA | 1304 | CG6011-RA | 77..1098 | 15..1036 | 5110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19030174..19031195 | 1036..15 | 5110 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:08 has no hits.
BO05886.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:07 Download gff for
BO05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 1..1023 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:22 Download gff for
BO05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 46..1085 | 2..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:29 Download gff for
BO05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 59..1078 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:08 Download gff for
BO05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 46..1085 | 2..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:35 Download gff for
BO05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp18-RA | 79..1098 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:35 Download gff for
BO05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19030172..19031193 | 17..1038 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:29 Download gff for
BO05886.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14855894..14856915 | 17..1038 | 99 | | Minus |
BO05886.pep Sequence
Translation from 16 to 1054
> BO05886.pep
MDILKAEIARKRKLLEQRQLVDEKKKYFRRGDLNAKNTEEVLQKVGYIKQ
ESVEAQGQTTEGAYSFVADGQNILPRTEVIRRLRERGEPILIFGETEPEA
FDRLRQCEISQPEANRGFRNDFQEAMEQVDAAYLQEMFANTPTTKEDKKS
DFAELDESVSWESIQTMAANMGRNKDYDMDVIITLLTFLLKLWNDQIANY
SKHEKMSTKVKMTRVIYTQTKEYVKPLFRKLKHHTLPEDILDSLRDICKH
LLNRNYITASDAYLEMAIGNAPWPIGVTMVGIHARTGREKIFSKNVAHVM
NDETQRKYIQGLKRLMTKCQEYFPTDPSKCVEYVSKKDREASFLDH
BO05886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp18-PA | 340 | CG6011-PA | 1..340 | 1..340 | 1760 | 100 | Plus |