Clone Sequence Records
BO05887.3prime Sequence
779 bp (778 high quality bases) assembled on 2005-12-02
> BO05887.3prime
ATGGTCTAGAAAGCTTGCGACCTCGGTGACGGGGCGCTTCTCGATCCAGG
CCTTGATCGGTTCCAAAGCGTTGACGGCATCCACGACTCCGCGCAGAGCT
GGGTAGGGTTCCAACAGATCGCGCTTGACCATGTAGTTCATGTAGTCGGT
GATGCCTGCGAAGTAGACGTCGGCCCAGGTCAGCTTGCCCAGAGCCAGGT
GACCATCGTTGTCCTTGACGGTCTGCTCGAGCTTCTCCAGGTAGAATGGA
ATGACCTCCGCATTCAGGGTGACCAACTTCTTCTCTTTAATCTCGTCCTC
CGGCTCGTACGAGACGACTGCAATTTTTAGACGGAAGTCATTGATGGTGT
CAACGACAATGTCGATCTGCAGATCCTCCCACGGAGTAGCGCCGCACAGG
CCGACAGTCTTGGCCAGGAATCGAGCCATCGAAATGCTCTGGTGCACACG
CTTGCCGTCCACCTCCAGCACGGGCATCTGTCCCATGGGCATGGTGGGCT
TCAGGGCTGGCCACTCGTCGCGGGTGACGCGCACATCCTCGTACTCCTGG
TTGCCGTAGGCGAACAGGTAGCGCAGGGGCTCGGCCAACGCCTTCACGTT
GAAGTAGAAGAGCGTGTAGCTGTGCTTGATGGGCTCGGCGGGCTCTGCTG
GTGGAGCGGCCTCTCCGCCCTCGACGGCACCCTCGGCTCCCTCGGCGGGT
GGTGGCGCCTCTCCCTCGGCTGGTGGTGCTCCCTCAGCTGGTGGTGCTTG
TGCTTCATCGGCCATGTCGACTGATAACT
BO05887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8938-PA | 750 | GstS1-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
| CG8938-PB | 750 | GstS1-RB | 1..747 | 765..19 | 3735 | 100 | Minus |
| CG8938-PC | 750 | GstS1-RC | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstS1-RC | 1461 | CG8938-RC | 525..1271 | 765..19 | 3735 | 100 | Minus |
| GstS1-RB | 1402 | CG8938-RB | 235..981 | 765..19 | 3735 | 100 | Minus |
| GstS1-RA | 1764 | CG8938-RA | 200..946 | 765..19 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17094765..17095035 | 495..765 | 1355 | 100 | Plus |
| 2R | 25286936 | 2R | 17094529..17094696 | 327..494 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 17094064..17094230 | 19..185 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 17094316..17094458 | 184..326 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:25:49 has no hits.
BO05887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:02 Download gff for
BO05887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8938-PA | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:34 Download gff for
BO05887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8938-PC | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:16 Download gff for
BO05887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 197..952 | 11..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:04 Download gff for
BO05887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 197..952 | 11..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:04 Download gff for
BO05887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17094058..17094228 | 11..183 | 98 | <- | Plus |
| 2R | 17094316..17094458 | 184..326 | 100 | <- | Plus |
| 2R | 17094529..17094696 | 327..494 | 100 | <- | Plus |
| 2R | 17094765..17095038 | 495..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:16 Download gff for
BO05887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12982270..12982543 | 495..768 | 99 | | Plus |
| arm_2R | 12981563..12981733 | 11..183 | 98 | <- | Plus |
| arm_2R | 12981821..12981963 | 184..326 | 100 | <- | Plus |
| arm_2R | 12982034..12982201 | 327..494 | 100 | <- | Plus |
BO05887.5prime Sequence
771 bp (771 high quality bases) assembled on 2005-11-28
> BO05887.5prime
CAGTCGACATGGCCGATGAAGCACAAGCACCACCAGCTGAGGGAGCACCA
CCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAGGGTGCCGT
CGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCCCATCAAGC
ACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCGAGCCCCTG
CGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTGCGCGTCAC
CCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGGACAGATGC
CCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTTCGATGGCT
CGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCGTGGGAGGA
TCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCGTCTAAAAA
TTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGAAGAAGTTG
GTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAGCTCGAGCA
GACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCTGACCTGGG
CCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACATGGTCAAG
CGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTGGATGCCGT
CAACGCTTTGGAACCGATCAAGGCCTGGATCGAGAAGCGCCCCGTCACCG
AGGTCGCAAGCTTTCTAGACC
BO05887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8938-PA | 750 | GstS1-RA | 1..747 | 9..755 | 3735 | 100 | Plus |
| CG8938-PB | 750 | GstS1-RB | 1..747 | 9..755 | 3735 | 100 | Plus |
| CG8938-PC | 750 | GstS1-RC | 1..747 | 9..755 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstS1-RC | 1461 | CG8938-RC | 525..1271 | 9..755 | 3735 | 100 | Plus |
| GstS1-RB | 1402 | CG8938-RB | 235..981 | 9..755 | 3735 | 100 | Plus |
| GstS1-RA | 1764 | CG8938-RA | 200..946 | 9..755 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17094765..17095035 | 279..9 | 1355 | 100 | Minus |
| 2R | 25286936 | 2R | 17094529..17094696 | 447..280 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 17094064..17094230 | 755..589 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 17094316..17094458 | 590..448 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:03:42 has no hits.
BO05887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:03 Download gff for
BO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8938-PA | 1..750 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:36 Download gff for
BO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8938-PC | 1..750 | 9..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:32 Download gff for
BO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 193..952 | 1..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:13 Download gff for
BO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 193..952 | 1..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:13 Download gff for
BO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17094765..17095040 | 1..279 | 98 | | Minus |
| 2R | 17094058..17094228 | 591..763 | 98 | <- | Minus |
| 2R | 17094316..17094458 | 448..590 | 100 | <- | Minus |
| 2R | 17094529..17094696 | 280..447 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:32 Download gff for
BO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12981563..12981733 | 591..763 | 98 | <- | Minus |
| arm_2R | 12981821..12981963 | 448..590 | 100 | <- | Minus |
| arm_2R | 12982034..12982201 | 280..447 | 100 | <- | Minus |
| arm_2R | 12982270..12982545 | 1..279 | 98 | | Minus |
BO05887.complete Sequence
781 bp (781 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630190
> BO05887.complete
GAAGTTATCAGTCGACATGGCCGATGAAGCACAAGCACCACCAGCTGAGG
GAGCACCACCAGCCGAGGGAGAGGCGCCACCACCCGCCGAGGGAGCCGAG
GGTGCCGTCGAGGGCGGAGAGGCCGCTCCACCAGCAGAGCCCGCCGAGCC
CATCAAGCACAGCTACACGCTCTTCTACTTCAACGTGAAGGCGTTGGCCG
AGCCCCTGCGCTACCTGTTCGCCTACGGCAACCAGGAGTACGAGGATGTG
CGCGTCACCCGCGACGAGTGGCCAGCCCTGAAGCCCACCATGCCCATGGG
ACAGATGCCCGTGCTGGAGGTGGACGGCAAGCGTGTGCACCAGAGCATTT
CGATGGCTCGATTCCTGGCCAAGACTGTCGGCCTGTGCGGCGCTACTCCG
TGGGAGGATCTGCAGATCGACATTGTCGTTGACACCATCAATGACTTCCG
TCTAAAAATTGCAGTCGTCTCGTACGAGCCGGAGGACGAGATTAAAGAGA
AGAAGTTGGTCACCCTGAATGCGGAGGTCATTCCATTCTACCTGGAGAAG
CTCGAGCAGACCGTCAAGGACAACGATGGTCACCTGGCTCTGGGCAAGCT
GACCTGGGCCGACGTCTACTTCGCAGGCATCACCGACTACATGAACTACA
TGGTCAAGCGCGATCTGTTGGAACCCTACCCAGCTCTGCGCGGAGTCGTG
GATGCCGTCAACGCTTTGGAACCGATCAAGGCCTGGATCGAGAAGCGCCC
CGTCACCGAGGTCGCAAGCTTTCTAGACCAT
BO05887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstS1-RC | 750 | CG8938-PC | 1..747 | 17..763 | 3735 | 100 | Plus |
| GstS1-RB | 750 | CG8938-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
| GstS1-RA | 750 | CG8938-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstS1-RC | 1461 | CG8938-RC | 525..1271 | 17..763 | 3735 | 100 | Plus |
| GstS1-RB | 1402 | CG8938-RB | 235..981 | 17..763 | 3735 | 100 | Plus |
| GstS1-RA | 1764 | CG8938-RA | 200..946 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17094765..17095035 | 287..17 | 1355 | 100 | Minus |
| 2R | 25286936 | 2R | 17094529..17094696 | 455..288 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 17094064..17094230 | 763..597 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 17094316..17094458 | 598..456 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:32:40 has no hits.
BO05887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:49 Download gff for
BO05887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RC | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:54:58 Download gff for
BO05887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RC | 226..981 | 14..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:01 Download gff for
BO05887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 200..946 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:49 Download gff for
BO05887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RC | 226..981 | 14..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:29 Download gff for
BO05887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstS1-RA | 200..946 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:29 Download gff for
BO05887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17094529..17094696 | 288..455 | 100 | <- | Minus |
| 2R | 17094765..17095035 | 17..287 | 100 | | Minus |
| 2R | 17094062..17094228 | 599..765 | 98 | <- | Minus |
| 2R | 17094316..17094458 | 456..598 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:01 Download gff for
BO05887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12982270..12982540 | 17..287 | 100 | | Minus |
| arm_2R | 12982034..12982201 | 288..455 | 100 | <- | Minus |
| arm_2R | 12981567..12981733 | 599..765 | 98 | <- | Minus |
| arm_2R | 12981821..12981963 | 456..598 | 100 | <- | Minus |
BO05887.pep Sequence
Translation from 16 to 781
> BO05887.pep
MADEAQAPPAEGAPPAEGEAPPPAEGAEGAVEGGEAAPPAEPAEPIKHSY
TLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEWPALKPTMPMGQMPVL
EVDGKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLKIAV
VSYEPEDEIKEKKLVTLNAEVIPFYLEKLEQTVKDNDGHLALGKLTWADV
YFAGITDYMNYMVKRDLLEPYPALRGVVDAVNALEPIKAWIEKRPVTEVA
SFLDH
BO05887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstS1-PC | 249 | CG8938-PC | 1..249 | 1..249 | 1306 | 100 | Plus |
| GstS1-PB | 249 | CG8938-PB | 1..249 | 1..249 | 1306 | 100 | Plus |
| GstS1-PA | 249 | CG8938-PA | 1..249 | 1..249 | 1306 | 100 | Plus |
| GstS1-PD | 250 | CG8938-PD | 1..250 | 1..249 | 1273 | 98 | Plus |
