Clone Sequence Records
BO05888.3prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-02
> BO05888.3prime
ATGGTCTAGAAAGCTTGCAGCCTCGCTTTCGCCAGGGGCCGCGTTTTCAC
CCACGTTGATGGGCACGATCAGATTCTCCTTCGACATCAGATTATATTTT
GTGACGAAATGCGTGAAACGGTGGCACAGATACGTCTCGGCCTCGAATTC
GTCGAAAATGCGACGATGGTGAAAGTAGGCGTGCGAGAAGATGCGATACA
CCCGCCGACATACGGAGCCCAGCTTGGTTACCGACGACTCCTTGATGGAC
ACCCTGCTAGGGAAGTACTTGTTGCTGTTTAGCAGACAGGCGGCACCGTC
CAGCGTGTGGCGTGTGTAGTCAATGGCCGGACATTCCTTGGGCGTCTTGT
GCGCGGCGCACAGGAATATCCACTGGTCAGTGGCTGTCATCTGGGTGCAC
GTCGACGGCGAGCACTCCTTCTGCAGCCGCACTGCCAGGCCGTTCAGCTC
CATGCAGAACTGGCGCAGGTGCTCGTACTTCCACACGCCCTCATCCTGGG
CTTCGGGCATGGTCAGTATGAGTTCCACGTTGCTCGGGTCGCGCTTAATC
AGCTGCTGTATGTACTGCTGCACCGCCAGCGTGCTGTCCATCTCCTCCAG
GGGCTCGTCGGGCCAGCGACAGAAGTCCTTGGATTTTGTGCCTGGCCGGT
TCCTACGCAATATGGTCGAGCCGTCAGCCATCTTCATGTCGACTGATAAC
T
BO05888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3403-PA | 672 | CG3403-RA | 1..669 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 1414 | CG3403-RA | 261..931 | 689..19 | 3355 | 100 | Minus |
Mob4-RB | 1426 | CG3403-RB | 261..943 | 689..19 | 3225 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6695891..6696267 | 253..629 | 1885 | 100 | Plus |
2R | 25286936 | 2R | 6695597..6695834 | 19..256 | 1190 | 100 | Plus |
2R | 25286936 | 2R | 6696339..6696401 | 627..689 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:58:18 has no hits.
BO05888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:04 Download gff for
BO05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:37 Download gff for
BO05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:03 Download gff for
BO05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..931 | 19..689 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:06 Download gff for
BO05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..931 | 19..689 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:06 Download gff for
BO05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6695597..6695831 | 19..253 | 100 | <- | Plus |
2R | 6695892..6696265 | 254..627 | 100 | <- | Plus |
2R | 6696340..6696401 | 628..689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:03 Download gff for
BO05888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2583102..2583336 | 19..253 | 100 | <- | Plus |
arm_2R | 2583397..2583770 | 254..627 | 100 | <- | Plus |
arm_2R | 2583845..2583906 | 628..689 | 100 | | Plus |
BO05888.5prime Sequence
701 bp (700 high quality bases) assembled on 2005-11-29
> BO05888.5prime
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTGCAAGCTTTCTAGAC
C
BO05888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3403-PA | 672 | CG3403-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 1414 | CG3403-RA | 261..931 | 15..685 | 3355 | 100 | Plus |
Mob4-RB | 1426 | CG3403-RB | 261..943 | 15..685 | 3225 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6695891..6696267 | 451..75 | 1885 | 100 | Minus |
2R | 25286936 | 2R | 6695597..6695834 | 685..448 | 1190 | 100 | Minus |
2R | 25286936 | 2R | 6696339..6696401 | 77..15 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:00:16 has no hits.
BO05888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:05 Download gff for
BO05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:38 Download gff for
BO05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3403-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:40 Download gff for
BO05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..931 | 15..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:33 Download gff for
BO05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 261..931 | 15..685 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:33 Download gff for
BO05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6695597..6695831 | 451..685 | 100 | <- | Minus |
2R | 6695892..6696265 | 77..450 | 100 | <- | Minus |
2R | 6696340..6696401 | 15..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:40 Download gff for
BO05888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2583102..2583336 | 451..685 | 100 | <- | Minus |
arm_2R | 2583397..2583770 | 77..450 | 100 | <- | Minus |
arm_2R | 2583845..2583906 | 15..76 | 100 | | Minus |
BO05888.complete Sequence
703 bp (703 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630191
> BO05888.complete
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTGCAAGCTTTCTAGAC
CAT
BO05888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 672 | CG3403-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
Mob4-RB | 684 | CG3403-PB | 1..681 | 17..685 | 3190 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-RA | 1414 | CG3403-RA | 261..931 | 15..685 | 3355 | 100 | Plus |
Mob4-RB | 1426 | CG3403-RB | 261..943 | 15..685 | 3200 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6695891..6696267 | 451..75 | 1885 | 100 | Minus |
2R | 25286936 | 2R | 6695597..6695834 | 685..448 | 1190 | 100 | Minus |
2R | 25286936 | 2R | 6696339..6696401 | 77..15 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:51:06 has no hits.
BO05888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:51 Download gff for
BO05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:00 Download gff for
BO05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 225..895 | 15..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:45 Download gff for
BO05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 263..931 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:52 Download gff for
BO05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 225..895 | 15..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:31 Download gff for
BO05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob4-RA | 263..931 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:31 Download gff for
BO05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6695595..6695831 | 451..687 | 99 | <- | Minus |
2R | 6695892..6696265 | 77..450 | 100 | <- | Minus |
2R | 6696340..6696399 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:45 Download gff for
BO05888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2583100..2583336 | 451..687 | 99 | <- | Minus |
arm_2R | 2583397..2583770 | 77..450 | 100 | <- | Minus |
arm_2R | 2583845..2583904 | 17..76 | 100 | | Minus |
BO05888.pep Sequence
Translation from 16 to 703
> BO05888.pep
MKMADGSTILRRNRPGTKSKDFCRWPDEPLEEMDSTLAVQQYIQQLIKRD
PSNVELILTMPEAQDEGVWKYEHLRQFCMELNGLAVRLQKECSPSTCTQM
TATDQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKE
SSVTKLGSVCRRVYRIFSHAYFHHRRIFDEFEAETYLCHRFTHFVTKYNL
MSKENLIVPINVGENAAPGESEAASFLDH
BO05888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob4-PA | 223 | CG3403-PA | 1..223 | 1..223 | 1198 | 100 | Plus |
Mob4-PB | 227 | CG3403-PB | 1..227 | 1..223 | 1183 | 98.2 | Plus |
Mob3-PA | 220 | CG4946-PA | 44..205 | 53..206 | 149 | 23.5 | Plus |