Clone BO05888 Report

Search the DGRC for BO05888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptMob4-RA
Protein status:BO05888.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO05888.3prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-02

> BO05888.3prime
ATGGTCTAGAAAGCTTGCAGCCTCGCTTTCGCCAGGGGCCGCGTTTTCAC
CCACGTTGATGGGCACGATCAGATTCTCCTTCGACATCAGATTATATTTT
GTGACGAAATGCGTGAAACGGTGGCACAGATACGTCTCGGCCTCGAATTC
GTCGAAAATGCGACGATGGTGAAAGTAGGCGTGCGAGAAGATGCGATACA
CCCGCCGACATACGGAGCCCAGCTTGGTTACCGACGACTCCTTGATGGAC
ACCCTGCTAGGGAAGTACTTGTTGCTGTTTAGCAGACAGGCGGCACCGTC
CAGCGTGTGGCGTGTGTAGTCAATGGCCGGACATTCCTTGGGCGTCTTGT
GCGCGGCGCACAGGAATATCCACTGGTCAGTGGCTGTCATCTGGGTGCAC
GTCGACGGCGAGCACTCCTTCTGCAGCCGCACTGCCAGGCCGTTCAGCTC
CATGCAGAACTGGCGCAGGTGCTCGTACTTCCACACGCCCTCATCCTGGG
CTTCGGGCATGGTCAGTATGAGTTCCACGTTGCTCGGGTCGCGCTTAATC
AGCTGCTGTATGTACTGCTGCACCGCCAGCGTGCTGTCCATCTCCTCCAG
GGGCTCGTCGGGCCAGCGACAGAAGTCCTTGGATTTTGTGCCTGGCCGGT
TCCTACGCAATATGGTCGAGCCGTCAGCCATCTTCATGTCGACTGATAAC
T

BO05888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3403-PA 672 CG3403-RA 1..669 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 1414 CG3403-RA 261..931 689..19 3355 100 Minus
Mob4-RB 1426 CG3403-RB 261..943 689..19 3225 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6695891..6696267 253..629 1885 100 Plus
2R 25286936 2R 6695597..6695834 19..256 1190 100 Plus
2R 25286936 2R 6696339..6696401 627..689 315 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:58:18 has no hits.

BO05888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:04 Download gff for BO05888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:37 Download gff for BO05888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:03 Download gff for BO05888.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..931 19..689 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:06 Download gff for BO05888.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..931 19..689 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:06 Download gff for BO05888.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6695597..6695831 19..253 100 <- Plus
2R 6695892..6696265 254..627 100 <- Plus
2R 6696340..6696401 628..689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:03 Download gff for BO05888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2583102..2583336 19..253 100 <- Plus
arm_2R 2583397..2583770 254..627 100 <- Plus
arm_2R 2583845..2583906 628..689 100   Plus

BO05888.5prime Sequence

701 bp (700 high quality bases) assembled on 2005-11-29

> BO05888.5prime
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTGCAAGCTTTCTAGAC
C

BO05888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3403-PA 672 CG3403-RA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 1414 CG3403-RA 261..931 15..685 3355 100 Plus
Mob4-RB 1426 CG3403-RB 261..943 15..685 3225 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6695891..6696267 451..75 1885 100 Minus
2R 25286936 2R 6695597..6695834 685..448 1190 100 Minus
2R 25286936 2R 6696339..6696401 77..15 315 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:00:16 has no hits.

BO05888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:05 Download gff for BO05888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:38 Download gff for BO05888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3403-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:40 Download gff for BO05888.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..931 15..685 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:33 Download gff for BO05888.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 261..931 15..685 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:33 Download gff for BO05888.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6695597..6695831 451..685 100 <- Minus
2R 6695892..6696265 77..450 100 <- Minus
2R 6696340..6696401 15..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:40 Download gff for BO05888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2583102..2583336 451..685 100 <- Minus
arm_2R 2583397..2583770 77..450 100 <- Minus
arm_2R 2583845..2583906 15..76 100   Minus

BO05888.complete Sequence

703 bp (703 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630191

> BO05888.complete
GAAGTTATCAGTCGACATGAAGATGGCTGACGGCTCGACCATATTGCGTA
GGAACCGGCCAGGCACAAAATCCAAGGACTTCTGTCGCTGGCCCGACGAG
CCCCTGGAGGAGATGGACAGCACGCTGGCGGTGCAGCAGTACATACAGCA
GCTGATTAAGCGCGACCCGAGCAACGTGGAACTCATACTGACCATGCCCG
AAGCCCAGGATGAGGGCGTGTGGAAGTACGAGCACCTGCGCCAGTTCTGC
ATGGAGCTGAACGGCCTGGCAGTGCGGCTGCAGAAGGAGTGCTCGCCGTC
GACGTGCACCCAGATGACAGCCACTGACCAGTGGATATTCCTGTGCGCCG
CGCACAAGACGCCCAAGGAATGTCCGGCCATTGACTACACACGCCACACG
CTGGACGGTGCCGCCTGTCTGCTAAACAGCAACAAGTACTTCCCTAGCAG
GGTGTCCATCAAGGAGTCGTCGGTAACCAAGCTGGGCTCCGTATGTCGGC
GGGTGTATCGCATCTTCTCGCACGCCTACTTTCACCATCGTCGCATTTTC
GACGAATTCGAGGCCGAGACGTATCTGTGCCACCGTTTCACGCATTTCGT
CACAAAATATAATCTGATGTCGAAGGAGAATCTGATCGTGCCCATCAACG
TGGGTGAAAACGCGGCCCCTGGCGAAAGCGAGGCTGCAAGCTTTCTAGAC
CAT

BO05888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 672 CG3403-PA 1..669 17..685 3345 100 Plus
Mob4-RB 684 CG3403-PB 1..681 17..685 3190 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-RA 1414 CG3403-RA 261..931 15..685 3355 100 Plus
Mob4-RB 1426 CG3403-RB 261..943 15..685 3200 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6695891..6696267 451..75 1885 100 Minus
2R 25286936 2R 6695597..6695834 685..448 1190 100 Minus
2R 25286936 2R 6696339..6696401 77..15 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:51:06 has no hits.

BO05888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:51 Download gff for BO05888.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:00 Download gff for BO05888.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 225..895 15..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:45 Download gff for BO05888.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 263..931 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:52 Download gff for BO05888.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 225..895 15..685 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:31 Download gff for BO05888.complete
Subject Subject Range Query Range Percent Splice Strand
Mob4-RA 263..931 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:31 Download gff for BO05888.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6695595..6695831 451..687 99 <- Minus
2R 6695892..6696265 77..450 100 <- Minus
2R 6696340..6696399 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:45 Download gff for BO05888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2583100..2583336 451..687 99 <- Minus
arm_2R 2583397..2583770 77..450 100 <- Minus
arm_2R 2583845..2583904 17..76 100   Minus

BO05888.pep Sequence

Translation from 16 to 703

> BO05888.pep
MKMADGSTILRRNRPGTKSKDFCRWPDEPLEEMDSTLAVQQYIQQLIKRD
PSNVELILTMPEAQDEGVWKYEHLRQFCMELNGLAVRLQKECSPSTCTQM
TATDQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKE
SSVTKLGSVCRRVYRIFSHAYFHHRRIFDEFEAETYLCHRFTHFVTKYNL
MSKENLIVPINVGENAAPGESEAASFLDH

BO05888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Mob4-PA 223 CG3403-PA 1..223 1..223 1198 100 Plus
Mob4-PB 227 CG3403-PB 1..227 1..223 1183 98.2 Plus
Mob3-PA 220 CG4946-PA 44..205 53..206 149 23.5 Plus